prot_Ecto-sp13_S_contig16988.4973.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16988.4973.1
Unique Nameprot_Ecto-sp13_S_contig16988.4973.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length75
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16988.4973.1 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 7.010e-41
Identity = 65/74 (87.84%), Postives = 70/74 (94.59%), Query Frame = 0 
Query:    1 ISLQELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDNESATIAKERFKGHVFRGHPIGAEATASRTSTTSSSV 74
            I+ +ELERLFAGCHGFESCRVRKDKNEHDVGFVDFLD ESATIAKERFKGHVFRGHPIGAEATA+RT+T SS +
Sbjct:   20 ITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGAEATATRTTTASSPI 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16988.4973.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.550e-30
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 0 
Query:    1 ISLQELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDNESATIAKERFKGHVFRGHPI 58
            I+ +ELERLFAGCHGFESCRVRKDKNEHDVGFVDFLD ESATIAKERFKGHVFRGHPI
Sbjct:   20 ITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPI 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16988.4973.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXN5_ECTSI7.010e-4187.84RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L4C0_9PHAE1.550e-3093.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..73
e-value: 3.2E-11
score: 45.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..58
e-value: 1.3E-9
score: 37.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16988contigEcto-sp13_S_contig16988:2899..3724 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16988.4973.1mRNA_Ecto-sp13_S_contig16988.4973.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16988 2899..3724 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16988.4973.1 ID=prot_Ecto-sp13_S_contig16988.4973.1|Name=mRNA_Ecto-sp13_S_contig16988.4973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
ISLQELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDNESATIAKERFKG
HVFRGHPIGAEATASRTSTTSSSV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf