mRNA_Ecto-sp13_S_contig16984.4971.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16984.4971.1
Unique NamemRNA_Ecto-sp13_S_contig16984.4971.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A6H5L0H0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H0_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.500e-9
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 MVCFGGVAQTVENVDAGLLVAPCALHLAPVS 93
            MVCFGGVA+ VEN DAGLL APCA HLAPVS
Sbjct:    2 MVCFGGVARNVENFDAGLLSAPCAPHLAPVS 32
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: D7G033_ECTSI (Ribosomal protein L35 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G033_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.350e-8
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:  184 SPVRLYVKGVMLGFKRGLRNTYHHTSL 264
             PVRLYVKGVMLGFKRGLRNTYHHTSL
Sbjct:   52 QPVRLYVKGVMLGFKRGLRNTYHHTSL 78
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A836CIX4_9STRA (Ribosomal protein L35Ae-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX4_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.490e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:  184 SPVRLYVKGVMLGFKRGLRNTYHHTSL 264
             PVRLYVKGV+LG+KRGLRN Y+HTSL
Sbjct:   16 QPVRLYVKGVVLGYKRGLRNQYNHTSL 42
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A7S2SN13_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN13_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.780e-5
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  175 WKHSPVRLYVKGVMLGFKRGLRNTYHHTSL 264
            +   PVRLYVKGV+LG+KRGLRN Y HTSL
Sbjct:   12 YSSQPVRLYVKGVVLGYKRGLRNQYCHTSL 41
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A6U4KLG0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4KLG0_HEMAN)

HSP 1 Score: 49.3 bits (116), Expect = 2.290e-5
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1 
Query:  175 WKHSPVRLYVKGVMLGFKRGLRNTYHHTSL 264
            WK  P RLYVKG ++GFKRGLRN Y  TSL
Sbjct:   26 WKSQPCRLYVKGAIMGFKRGLRNQYEKTSL 55
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: L1I611_GUITC (Large subunit ribosomal protein L35Ae, cytoplasmic n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I611_GUITC)

HSP 1 Score: 48.9 bits (115), Expect = 2.700e-5
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  175 WKHSPVRLYVKGVMLGFKRGLRNTYHHTSL 264
            +K  PVRLYVKG +LG++RGLRN Y HTSL
Sbjct:   16 FKTQPVRLYVKGAVLGYRRGLRNQYEHTSL 45
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A7S3GR16_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GR16_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 3.550e-5
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1 
Query:  184 SPVRLYVKGVMLGFKRGLRNTYHHTSL 264
             PVRLYVKG +LG+KRG  NTYHHT+L
Sbjct:   35 QPVRLYVKGTVLGYKRGFTNTYHHTAL 61
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A7R9U9P7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9P7_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.440e-5
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  184 SPVRLYVKGVMLGFKRGLRNTYHHTSL 264
             PVRLYVKGV+LG+KRG RN Y+HTSL
Sbjct:    8 QPVRLYVKGVVLGYKRGQRNQYNHTSL 34
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A812S7Z5_SYMMI (RPL35AC protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812S7Z5_SYMMI)

HSP 1 Score: 47.8 bits (112), Expect = 5.250e-5
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:  187 PVRLYVKGVMLGFKRGLRNTYHHTSL 264
            P RL+VKG +LGFKRG RNTYHHT+L
Sbjct:    1 PTRLHVKGTILGFKRGRRNTYHHTNL 26
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BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Match: A0A3R7J585_9STRA (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A3R7J585_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.560e-5
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:  178 KHSPVRLYVKGVMLGFKRGLRNTYHHTSL 264
            K SP RLYVKGV LG+KRGLRN Y HT+L
Sbjct:  656 KSSPTRLYVKGVFLGYKRGLRNQYSHTAL 684
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16984.4971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L0H0_9PHAE7.500e-983.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G033_ECTSI1.350e-896.30Ribosomal protein L35 n=1 Tax=Ectocarpus siliculos... [more]
A0A836CIX4_9STRA6.490e-681.48Ribosomal protein L35Ae-domain-containing protein ... [more]
A0A7S2SN13_9STRA1.780e-573.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6U4KLG0_HEMAN2.290e-570.00Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
L1I611_GUITC2.700e-570.00Large subunit ribosomal protein L35Ae, cytoplasmic... [more]
A0A7S3GR16_9STRA3.550e-574.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9U9P7_9STRA4.440e-577.78Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812S7Z5_SYMMI5.250e-576.92RPL35AC protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A3R7J585_9STRA6.560e-575.86Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16984contigEcto-sp13_S_contig16984:598..2703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons3
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.82846-CDS-Ecto-sp13_S_contig16984:597..6891681462888.82846-CDS-Ecto-sp13_S_contig16984:597..689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16984 598..689 +
1681462888.8391109-CDS-Ecto-sp13_S_contig16984:2316..24101681462888.8391109-CDS-Ecto-sp13_S_contig16984:2316..2410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16984 2317..2410 +
1681462888.848623-CDS-Ecto-sp13_S_contig16984:2625..27031681462888.848623-CDS-Ecto-sp13_S_contig16984:2625..2703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16984 2626..2703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16984.4971.1prot_Ecto-sp13_S_contig16984.4971.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16984 598..2703 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16984.4971.1

>prot_Ecto-sp13_S_contig16984.4971.1 ID=prot_Ecto-sp13_S_contig16984.4971.1|Name=mRNA_Ecto-sp13_S_contig16984.4971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MVCFGGVAQTVENVDAGLLVAPCALHLAPVSSLCVQQPHDSKNPFDVYRL
TGWLDHVLWKHSPVRLYVKGVMLGFKRGLRNTYHHTSL
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mRNA from alignment at Ecto-sp13_S_contig16984:598..2703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16984.4971.1 ID=mRNA_Ecto-sp13_S_contig16984.4971.1|Name=mRNA_Ecto-sp13_S_contig16984.4971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2106bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16984:598..2703+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTGCTTTGGTGGCGTGGCGCAAACCGTGGAAAACGTTGATGCTGG
CCTCCTCGTAGCACCATGCGCACTTCACCTCGCTCCGGTCAGGTGAGAAA
TTCCTCCTTGTAGACCCCGACTGCTGCTGTGCAGTGGTACTGCTGTATAT
GCTAATTGCCTTGCTTGGCGTTACCGTATCATTTATTGTGCCGTGTGCAC
CTTGTTGTGCCATTTTATGTGATGCTCATCGGCGATAGTTCACTGCTGTT
CGCTGTCTCTGCGCGAGGTGTGGTGTCGAAAGATTGCTATTGGTAGACGT
GGAAAACGGTAATTTGAGACATGAAAGCAGTCGTCGGACACTGCATTTTG
TACGAAGGTAAGATCGAGGTAGATCCCTAGTATACATGCGCCTTTGGGTT
GTGCGAGTGGGTGACCGTTGCTGGTGTGATCCTGCAGGAACGTTGTGTGC
ATCGTTCTTGATCCAGAGGTAGTCTGCTTCAGTTGACGCCCTACCAAGTG
CCGCCGCGCCTGCCACAACCCATGTTTGACTGCCGCCACTGGCGTCGAGC
CCGTTCATGTTGTTGATGCCAAGTGACTTTCGCGTTTTTCGTGCCTGCAA
AGACGCCACCGATTTTTGTTGCACCCGCAAGCGATCTGCGCGGAAAAATC
GACCTTTCACCTTCCCAAAGCATATCAAAAGCTTCCGCCCTCACCAGGGT
TATCCGAGCTAGGTTCCGTCGCGGGGGTTGAGGCAAGGGGCTGGAAATCT
GCGGTGTTTCCACACGAATTACCCCCAGAGAGAACAAACAGATGGGAGGC
TTGCTAGTGAGCTTGTGTCTGTTGATGCCATTATGCTCCCGCTGGTCCAA
GTGCCACAGTCCACAGCAAGCAGCCCCGGTTTCCCACGGGCTCCGTGATG
ATATTTTTTTACCAGCGGTACCCCAAGCTTTTGACACTCTACCAAGGTAA
CGTTATCAACATTCTAGGTAGAGGCCTCTGTACTGCCGTGGCTCTTTCCA
TGTAGGACAGCCTTGCACTAAAAAATTCTACTACTGATTAACGGCTTCAA
GTAACTATGCACACTTTTTCGGCGTGGTGCTGACCAAGGCTCTAGGAAAT
ATAGGGCATGTGCAACAAAAGGTCGAGGTACGCCGTAGTTTTGGCTGGTG
TGGTGGATACCTTTGTTGGCGTGCCAGATCGACCAATTGTGTCAACCTCA
GGTCGAGCTGGCGCGTTCCTGCGATACTGAAGCTTCATACGCTAGCAGAC
ACAACTACAGACCGACTGCCCGAGGGTTTTGCAGTTTTGGACATCGATGC
CCAGAGAGGGAGCACGTATTCCACGCGAAACAGTTGGGCTATGGATGGGC
ATAAGCAGGCTGGAAATGGGGGGGATTTTCCGCTGTTACGCCGATAGACG
ACAGCTCCAGCATGCCCGCTTACGGGTGCTTTCGTCGTAGCAAACCACTC
ATTTTTTTCTTGTAGGCTACCCGCCTCTTTCAAGGCTATGACGCAGTCGG
GAGCGCTGCTTTGATTTCGCGGACAGTACACACCGAACATTGCGGCAGCG
CATCTGCATCTTTCTTCCAGGTCAACTATTTCGCCAAACCGAACACATTT
TGTGTACATTCGAAGTCTCATCTTGGTAAAGAGAAAATGAAGCAGCGCTG
CCTTGTGTTGGTCCCTCCGCGCCTGCACAAGCCTCAAACGTTTCCCGGAC
CTTTCGTTGCCGCGTGCAGCTCTCTCTGCGTGCAACAGCCTCACGACAGC
AAGAACCCTTTCGATGTGTACCGACTGACTGGCTGGCTCGATCACGTGCT
GTGGAAGCACTCAGTAAGTTGCCATCACTTGCTGCTATGCATACGTGCCT
CTGCGGTCGAGGCCTCTTGTTTCCGCTGGGTTTTGTCTATTGTTCCGCGA
AGGTTGAACCGCCACGATTTCTCGCTGCTGTAATTCGAACGTTTTGCATT
TTGCCCGCCTAGCAGACATCCTGCTGACCCCCCCATCGCCTCTGAACTGT
GTCCCCCTTTCGTTGTTCCCTTGTGCAGCCCGTGCGGCTGTACGTGAAGG
GCGTCATGCTTGGCTTCAAGCGCGGCCTTCGGAACACTTACCACCACACC
TCCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16984:598..2703+

>mRNA_Ecto-sp13_S_contig16984.4971.1 ID=mRNA_Ecto-sp13_S_contig16984.4971.1|Name=mRNA_Ecto-sp13_S_contig16984.4971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16984:598..2703+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTGCTTTGGTGGCGTGGCGCAAACCGTGGAAAACGTTGATGCTGG
CCTCCTCGTAGCACCATGCGCACTTCACCTCGCTCCGGTCAGCTCTCTCT
GCGTGCAACAGCCTCACGACAGCAAGAACCCTTTCGATGTGTACCGACTG
ACTGGCTGGCTCGATCACGTGCTGTGGAAGCACTCACCCGTGCGGCTGTA
CGTGAAGGGCGTCATGCTTGGCTTCAAGCGCGGCCTTCGGAACACTTACC
ACCACACCTCCCTC
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