mRNA_Ecto-sp13_S_contig1696.4961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1696.4961.1
Unique NamemRNA_Ecto-sp13_S_contig1696.4961.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1696.4961.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.790e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  151 SVYVALSRATGLDDLNLPFPVTLQDLNQPQNQDIIAIVTYLHRLDE 288
            +VYVALSRATGL DLNL FPVTLQDLNQPQN DI+AIV YLHRLDE
Sbjct:  273 AVYVALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDE 318
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1696.4961.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.080e-16
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  151 SVYVALSRATGLDDLNLPFPVTLQDLNQPQNQDIIAIVTYLHRLDE 288
            +VYVALSRATGL DLNL FPVTLQDLNQPQN DI+AIV YLHRLDE
Sbjct: 1980 AVYVALSRATGLGDLNLLFPVTLQDLNQPQNPDIVAIVNYLHRLDE 2025
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1696.4961.1 vs. uniprot
Match: A0A6H5K6P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.000e-13
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  145 PPSVYVALSRATGLDDLNLPFPVTLQDLNQPQNQDIIAIVTYLHRLDE 288
            P +VYVALSRAT LD LNL FPVTL+DLNQP ++DI+AI+ YLHRLD+
Sbjct:   18 PAAVYVALSRATSLDALNLLFPVTLEDLNQPPDRDILAIINYLHRLDK 65
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1696.4961.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-11
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  145 PPSVYVALSRATGLDDLNLPFPVTLQDLNQPQNQDIIAIVTYLHRLDE 288
            P +VYVAL RAT L+ LNL FPVTL+DLNQP ++DI+AI+ YLHRLD+
Sbjct:  253 PAAVYVALFRATILEALNLLFPVTLEDLNQPPDRDILAIINYLHRLDK 300
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1696.4961.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.990e-11
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  133 PRTAPPSVYVALSRATGLDDLNLPFPVTLQDLNQPQNQDIIAIVTYLHRLDE 288
            P   P S Y+ALSRAT L+DL L FPVTL+DL++P+N+D++A++ +LHRL+E
Sbjct: 1853 PLVDPASSYLALSRATYLEDLYLLFPVTLEDLSRPRNKDVVALIEFLHRLEE 1904
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1696.4961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2I1_ECTSI1.790e-1686.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI2.080e-1686.96ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5K6P6_9PHAE1.000e-1372.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPV6_9PHAE1.080e-1168.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN07_9PHAE9.990e-1157.69ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1696contigEcto-sp13_S_contig1696:11637..12653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.9
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7FSK0
Model size289
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size288
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.9924462-CDS-Ecto-sp13_S_contig1696:11636..118481681462887.9924462-CDS-Ecto-sp13_S_contig1696:11636..11848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1696 11637..11848 -
1681462888.004263-CDS-Ecto-sp13_S_contig1696:12577..126531681462888.004263-CDS-Ecto-sp13_S_contig1696:12577..12653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1696 12578..12653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1696.4961.1prot_Ecto-sp13_S_contig1696.4961.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1696 11637..12653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1696.4961.1

>prot_Ecto-sp13_S_contig1696.4961.1 ID=prot_Ecto-sp13_S_contig1696.4961.1|Name=mRNA_Ecto-sp13_S_contig1696.4961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
GERACLVYVKPGTCVDGHTFLLTLEVRGKPCARSSSTSAALRDMPRTAPP
SVYVALSRATGLDDLNLPFPVTLQDLNQPQNQDIIAIVTYLHRLDE
back to top

mRNA from alignment at Ecto-sp13_S_contig1696:11637..12653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1696.4961.1 ID=mRNA_Ecto-sp13_S_contig1696.4961.1|Name=mRNA_Ecto-sp13_S_contig1696.4961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1696:11637..12653- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGAGAGAGCCTGCCTGGTGTACGTGAAACCTGGTACTTGTGTCGATGG
CCACACATTTCTGCTGACGCTCGAAGGTGCGATGAGCGTGAGAAGCAGAG
AGTGGGACGGGAGATCCACAAGATCGCGCATGTCGGCCATCGATAGTGAT
CCCAAGTAGGACTGGGAAAAGTGATTGTCTCTTCCATTTGACACGGCTCT
ATTGAGTTGAAAATTCCCGAAGCGAATGCAAAGTCTAGCTATCATCTCAT
ATGTGCTTTAGCTCTCAAGAGATCTACTTGAGCAACGTAGCATACTACGT
ACTTCTGGTTGTTCCGAGGGTTTGAATAGTCCGAACTCCCGCTGCAAGCA
GACTTCGTGGGTTCTCGACCGTGTTTTGCCGCATCTGAACGAAGTCTCTC
ACCTTCCTTTCGCATTGCACCTTGTACTATGCTTTTTCTGTAGGTGGATT
TTTTTGGCCACCAGTGGTCTATCTAGTACTCAAGGCGCGGGCCGTGTTGT
CTGCATCATGCAAACGGATTCTTTGCCCTTCGCGATGAATTATTTCCTTT
ACCAGTTGCAAAGAGAGGAGGGCACAGTTGGAGAGTGGTAGGGCCTTCGA
AATATCATACTGGACCTCAAGATTACATCAAGATCACTCACAGTCAGTCC
CCGATACCATGTCTGTCTGCAGCTTGAGATCGGAAGAGGCCTGTGTTCTG
GTGGGAGGTAGACATATTTTCTCGTTTTTCCGAACACAAGCTTGGACCAC
AAAATATTCCTCCTAGCCATGCGATTCACTGCGGCCTTTCGTCTGTATAC
CGCAGTCAGGGGCAAACCATGCGCAAGATCATCCTCGACATCCGCCGCCC
TCCGGGACATGCCAAGGACAGCGCCGCCGTCCGTCTACGTCGCGCTTTCG
CGTGCTACCGGACTTGACGATTTGAATCTTCCCTTCCCTGTCACCCTTCA
AGACCTTAACCAACCGCAAAACCAAGACATCATCGCCATCGTCACCTACC
TCCACCGTCTAGACGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1696:11637..12653-

>mRNA_Ecto-sp13_S_contig1696.4961.1 ID=mRNA_Ecto-sp13_S_contig1696.4961.1|Name=mRNA_Ecto-sp13_S_contig1696.4961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1696:11637..12653- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGAGAGAGCCTGCCTGGTGTACGTGAAACCTGGTACTTGTGTCGATGG
CCACACATTTCTGCTGACGCTCGAAGTCAGGGGCAAACCATGCGCAAGAT
CATCCTCGACATCCGCCGCCCTCCGGGACATGCCAAGGACAGCGCCGCCG
TCCGTCTACGTCGCGCTTTCGCGTGCTACCGGACTTGACGATTTGAATCT
TCCCTTCCCTGTCACCCTTCAAGACCTTAACCAACCGCAAAACCAAGACA
TCATCGCCATCGTCACCTACCTCCACCGTCTAGACGAA
back to top