mRNA_Ecto-sp13_S_contig16944.4954.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 449 bits (1155), Expect = 3.800e-145 Identity = 240/258 (93.02%), Postives = 249/258 (96.51%), Query Frame = 1
Query: 211 SITGGPEHGNLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
SITGGPEHG+LDSWRA+ QPQQQREAE D+PKEEADVAQHS RSQDAETVETD+VHPGPS PAEEERD GHSFGEQVAS+AGLAALT+GD EALDEIKQLIRAPP+RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTL EIASSHMEDQWM+EREQGLS ARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIA+AALKTGDRYIQTRRVVKIADIA DAVECCSLARRLA
Sbjct: 646 SITGGPEHGDLDSWRARIQPQQQREAEHDDPKEEADVAQHSLRSQDAETVETDIVHPGPSCPAEEERDPGHSFGEQVASFAGLAALTKGDCEALDEIKQLIRAPPIRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLA 903
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 397 bits (1019), Expect = 5.010e-125 Identity = 222/261 (85.06%), Postives = 227/261 (86.97%), Query Frame = 1
Query: 205 NGSITGGPEHGNLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAE-TVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
N SITGG EHGNLDSWRA+ QPQQQREAE DEPKEEADVAQHSPRSQD E TV ERD G SF EQVAS+AGLAALT+GDREALDEIKQLIR PP+RAP ADGVSPAPEPIDE LRDLNRLAEMATTLGEIASSHMEDQWM+ REQGLS ARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKAL LLSAAVPMVGGLGGIAA ALKTGDRYIQTRRV KIADIA DAVECCSLARRLA
Sbjct: 670 NSSITGGSEHGNLDSWRARIQPQQQREAEHDEPKEEADVAQHSPRSQDEEETVXXXXXXXXXXXXXXXERDPGDSFREQVASFAGLAALTKGDREALDEIKQLIRVPPIRAPYADGVSPAPEPIDEANLRDLNRLAEMATTLGEIASSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLA 930
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 183 bits (464), Expect = 8.480e-48 Identity = 118/258 (45.74%), Postives = 167/258 (64.73%), Query Frame = 1
Query: 217 TGGPEHG-NLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPV-RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
TGGP G +LDSWRA+ + QQ++ A +++ K E A+ S +Q + +TD P S + E D H Q++S++ L+ L G + L++++QL+ A + R P G+S + L +LNRL MA LG++ S H+ ++ ++ RE L KAY+ A+R G+CNA+LA+SVV S+LV TSKTG +GTAGK L+ LS+AVP+V GL G+AAAALK GDRY+QTRRV KI DIA D+ +CC LAR LA
Sbjct: 340 TGGPTRGESLDSWRARLR-QQEQAAVREDTKAENPAARTSSSTQGDKPGKTDRATTEPISGSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLS------ETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLA 590
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 174 bits (441), Expect = 1.230e-44 Identity = 111/249 (44.58%), Postives = 161/249 (64.66%), Query Frame = 1
Query: 241 LDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPV-RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
LDSWRA+ + QQ++ AE+++ K E A+ S +Q + + D GP S + E D Q++S++ L+ L G ++L++++QL+ A + R+ P G+S + L ++NRL MA LG + S H+ ++ ++ RE L KAY+ A+R G+CNA+LA+SVV S+LV TSKTG +G AGK L+ LS+AVP+V GL G+AAAALK GDRY+QTRRV KI DIA D+ +CC LAR LA
Sbjct: 561 LDSWRARLR-QQEQAAEREDTKAENPAARTSSSTQGDKPGKPDRATTGPISGSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLS------ETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLA 802
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 171 bits (433), Expect = 1.260e-43 Identity = 112/257 (43.58%), Postives = 164/257 (63.81%), Query Frame = 1
Query: 220 GGP-EHGNLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPV-RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
GGP + +LDSWRA+ + QQ++ A +++ K E + S +Q + + D P S + E D H Q++S++ L+ L G + +L+++ QL+ A + R+ P G++ L +LNRL MA LG++ S H+ ++ ++ RE L KAY+ A+R G+CNA+LA+SVV S+LV TSKTG +GTAGK L+ LS+AVP+V GL G+AAAALK GDRY+QTRRV KI D+A D+ +CC LAR LA
Sbjct: 368 GGPAKDESLDSWRARLR-QQEQAAVREDTKAENPAVRTSSSTQGDKPGKPDGATTEPISGSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLN------GTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALA 617
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 163 bits (412), Expect = 2.030e-41 Identity = 93/183 (50.82%), Postives = 124/183 (67.76%), Query Frame = 1
Query: 436 QVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
Q +S AGL L R + EAL++I+++I A VR+ + P E D + R+L L M+T LGE+A H ED +R +E L K Y++AVR G+C A+LA+SV+ SN V+TSKTGG+G G ALKL+S AVP++GGL +A AL+ GD Y+QTRR+VKI +A D VECCSLARRLA
Sbjct: 168 QFSSSAGLGPLIRENPEALEDIQRVIEATTVRS-----IHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLA 345
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 163 bits (413), Expect = 6.240e-41 Identity = 94/186 (50.54%), Postives = 129/186 (69.35%), Query Frame = 1
Query: 427 FGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
F Q++S AGL +L + + EAL++I+++I+AP A G E D E+ R L L MA LGE+A SH ED+ ++ +E L+ KAY+ AVR G+CNA+LA+SV+ S+ V+TSKTGG+G G AL LLS+AVP++ GL G+A AL+TGD Y+QTRR+ KI +A D +ECCSLARRLA
Sbjct: 477 FRVQLSSSAGLDSLIKENPEALEDIQRVIKAPA-----AGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLA 657
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 161 bits (408), Expect = 1.290e-40 Identity = 111/261 (42.53%), Postives = 157/261 (60.15%), Query Frame = 1
Query: 214 ITGGPEHGN-LDSWRAKTQPQQQREAE---QDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
+TGGP +G LDSWR + P+ + + + D +++A V S + E S E+ +A F Q++S AGL +L R + AL++I+++I A A VS E D + R L L M+T LGE+ H ED ++ E L KAY+ AVR G+CNA+LA+SV+ S+ V+TSKTGG+G AG ALK++S A+P+VGG G+A A+K+GD Y+QTRR+VKI +A DA+ECCSLARRLA
Sbjct: 247 LTGGPAYGEGLDSWRERLAPKHKTKLQIFRGDRMEKDAPVPPGSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASV-----AGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLA 502
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 158 bits (400), Expect = 3.330e-39 Identity = 92/186 (49.46%), Postives = 125/186 (67.20%), Query Frame = 1
Query: 427 FGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
F Q++S AG +L R + EAL++I ++I+AP A + E D E+ R L L MA LGE+A SH ED ++ +E L+ KAY+ AVR G+CNA+LA+SV+ S+ V+T KTGG+G G AL LLS+AVP++ GL G+A AL+TGD +QTRR+VKI +A D +ECCSLARRLA
Sbjct: 437 FRVQLSSSAGFDSLIRENPEALEDIHRVIKAPA-----AGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLA 617
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 154 bits (388), Expect = 1.020e-37 Identity = 90/186 (48.39%), Postives = 126/186 (67.74%), Query Frame = 1
Query: 427 FGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
F Q++S AGL +L R +AL++I+++I + A VSP + D + R L L M+T LGE+A H ED ++ +E L AY++AVR G+C A+LA+SV+ S+ V+TSKTGG+G AG A+KL+S+AVP+VGGL +A AL+ GD Y+QTRR+VKI +A DAV+CC LARRLA
Sbjct: 410 FSAQLSSSAGLDSLIREKPKALEDIQRVIESTV-----AGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLA 590 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16944.4954.1 >prot_Ecto-sp13_S_contig16944.4954.1 ID=prot_Ecto-sp13_S_contig16944.4954.1|Name=mRNA_Ecto-sp13_S_contig16944.4954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=353bp GSIPEALGALSKLKELRLSNNKLSGTVPEGLGGLTGLRGLLLNDNNLEGVback to top mRNA from alignment at Ecto-sp13_S_contig16944:592..3648+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16944.4954.1 ID=mRNA_Ecto-sp13_S_contig16944.4954.1|Name=mRNA_Ecto-sp13_S_contig16944.4954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16944:592..3648+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16944:592..3648+ >mRNA_Ecto-sp13_S_contig16944.4954.1 ID=mRNA_Ecto-sp13_S_contig16944.4954.1|Name=mRNA_Ecto-sp13_S_contig16944.4954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16944:592..3648+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |