mRNA_Ecto-sp13_S_contig16944.4954.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16944.4954.1
Unique NamemRNA_Ecto-sp13_S_contig16944.4954.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 449 bits (1155), Expect = 3.800e-145
Identity = 240/258 (93.02%), Postives = 249/258 (96.51%), Query Frame = 1
Query:  211 SITGGPEHGNLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            SITGGPEHG+LDSWRA+ QPQQQREAE D+PKEEADVAQHS RSQDAETVETD+VHPGPS PAEEERD GHSFGEQVAS+AGLAALT+GD EALDEIKQLIRAPP+RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTL EIASSHMEDQWM+EREQGLS ARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIA+AALKTGDRYIQTRRVVKIADIA DAVECCSLARRLA
Sbjct:  646 SITGGPEHGDLDSWRARIQPQQQREAEHDDPKEEADVAQHSLRSQDAETVETDIVHPGPSCPAEEERDPGHSFGEQVASFAGLAALTKGDCEALDEIKQLIRAPPIRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLSEIASSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLA 903          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 5.010e-125
Identity = 222/261 (85.06%), Postives = 227/261 (86.97%), Query Frame = 1
Query:  205 NGSITGGPEHGNLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAE-TVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            N SITGG EHGNLDSWRA+ QPQQQREAE DEPKEEADVAQHSPRSQD E TV               ERD G SF EQVAS+AGLAALT+GDREALDEIKQLIR PP+RAP ADGVSPAPEPIDE  LRDLNRLAEMATTLGEIASSHMEDQWM+ REQGLS ARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKAL LLSAAVPMVGGLGGIAA ALKTGDRYIQTRRV KIADIA DAVECCSLARRLA
Sbjct:  670 NSSITGGSEHGNLDSWRARIQPQQQREAEHDEPKEEADVAQHSPRSQDEEETVXXXXXXXXXXXXXXXERDPGDSFREQVASFAGLAALTKGDREALDEIKQLIRVPPIRAPYADGVSPAPEPIDEANLRDLNRLAEMATTLGEIASSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLA 930          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 8.480e-48
Identity = 118/258 (45.74%), Postives = 167/258 (64.73%), Query Frame = 1
Query:  217 TGGPEHG-NLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPV-RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            TGGP  G +LDSWRA+ + QQ++ A +++ K E   A+ S  +Q  +  +TD     P S +  E D  H    Q++S++ L+ L  G  + L++++QL+ A  + R  P  G+S      +   L +LNRL  MA  LG++ S H+ ++ ++ RE  L    KAY+ A+R G+CNA+LA+SVV S+LV TSKTG +GTAGK L+ LS+AVP+V GL G+AAAALK GDRY+QTRRV KI DIA D+ +CC LAR LA
Sbjct:  340 TGGPTRGESLDSWRARLR-QQEQAAVREDTKAENPAARTSSSTQGDKPGKTDRATTEPISGSSREADMDHMTQAQISSFSALSTLCGGSHKRLEQVRQLVEALDINRFSPGTGLS------ETGTLGELNRLVAMAEDLGDMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLA 590          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.230e-44
Identity = 111/249 (44.58%), Postives = 161/249 (64.66%), Query Frame = 1
Query:  241 LDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPV-RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            LDSWRA+ + QQ++ AE+++ K E   A+ S  +Q  +  + D    GP S +  E D       Q++S++ L+ L  G  ++L++++QL+ A  + R+ P  G+S      +   L ++NRL  MA  LG + S H+ ++ ++ RE  L    KAY+ A+R G+CNA+LA+SVV S+LV TSKTG +G AGK L+ LS+AVP+V GL G+AAAALK GDRY+QTRRV KI DIA D+ +CC LAR LA
Sbjct:  561 LDSWRARLR-QQEQAAEREDTKAENPAARTSSSTQGDKPGKPDRATTGPISGSSREADMDDMTQAQISSFSALSTLCGGRHKSLEQVRQLVEALGINRSSPGTGLS------ETGTLGEVNRLVAMAEDLGGMVSRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLA 802          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.260e-43
Identity = 112/257 (43.58%), Postives = 164/257 (63.81%), Query Frame = 1
Query:  220 GGP-EHGNLDSWRAKTQPQQQREAEQDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPV-RAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            GGP +  +LDSWRA+ + QQ++ A +++ K E    + S  +Q  +  + D     P S +  E D  H    Q++S++ L+ L  G + +L+++ QL+ A  + R+ P  G++          L +LNRL  MA  LG++ S H+ ++ ++ RE  L    KAY+ A+R G+CNA+LA+SVV S+LV TSKTG +GTAGK L+ LS+AVP+V GL G+AAAALK GDRY+QTRRV KI D+A D+ +CC LAR LA
Sbjct:  368 GGPAKDESLDSWRARLR-QQEQAAVREDTKAENPAVRTSSSTQGDKPGKPDGATTEPISGSSREADMDHITQAQISSFSSLSTLCGGSQASLEQVGQLVEALGINRSSPGTGLN------GTGTLGELNRLVAMAEDLGDMVSRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALA 617          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 2.030e-41
Identity = 93/183 (50.82%), Postives = 124/183 (67.76%), Query Frame = 1
Query:  436 QVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            Q +S AGL  L R + EAL++I+++I A  VR+     + P  E  D +  R+L  L  M+T LGE+A  H ED  +R +E  L    K Y++AVR G+C A+LA+SV+ SN V+TSKTGG+G  G ALKL+S AVP++GGL  +A  AL+ GD Y+QTRR+VKI  +A D VECCSLARRLA
Sbjct:  168 QFSSSAGLGPLIRENPEALEDIQRVIEATTVRS-----IHPDDELSDIQSRRNLGTLVTMSTALGEVALKHTEDMSVRRKELALPPFSKEYYSAVRSGLCQAYLAASVIDSNWVSTSKTGGMGKVGAALKLMSGAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLA 345          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.240e-41
Identity = 94/186 (50.54%), Postives = 129/186 (69.35%), Query Frame = 1
Query:  427 FGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            F  Q++S AGL +L + + EAL++I+++I+AP      A G     E  D E+ R L  L  MA  LGE+A SH ED+ ++ +E  L+   KAY+ AVR G+CNA+LA+SV+ S+ V+TSKTGG+G  G AL LLS+AVP++ GL G+A  AL+TGD Y+QTRR+ KI  +A D +ECCSLARRLA
Sbjct:  477 FRVQLSSSAGLDSLIKENPEALEDIQRVIKAPA-----AGGFYFDDELSDMERRRKLGALMNMAKALGEVALSHTEDKDVQRKELALAPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTSKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHYLQTRRLAKITAMAADTMECCSLARRLA 657          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.290e-40
Identity = 111/261 (42.53%), Postives = 157/261 (60.15%), Query Frame = 1
Query:  214 ITGGPEHGN-LDSWRAKTQPQQQREAE---QDEPKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            +TGGP +G  LDSWR +  P+ + + +    D  +++A V   S   +     E        S   E+  +A   F  Q++S AGL +L R +  AL++I+++I A       A  VS   E  D +  R L  L  M+T LGE+   H ED  ++  E  L    KAY+ AVR G+CNA+LA+SV+ S+ V+TSKTGG+G AG ALK++S A+P+VGG  G+A  A+K+GD Y+QTRR+VKI  +A DA+ECCSLARRLA
Sbjct:  247 LTGGPAYGEGLDSWRERLAPKHKTKLQIFRGDRMEKDAPVPPGSRNGRHEAVGERVRSPEHASLSPEKAEEADRVFKAQLSSSAGLDSLIRENPGALEDIQRVIEASV-----AGSVSVDNELSDMQSRRKLGTLVTMSTALGEVVLKHTEDMDVKREELTLPPFSKAYYTAVRTGICNAYLAASVIDSDWVSTSKTGGMGKAGAALKVMSRAIPVVGGPTGLAGKAMKSGDHYLQTRRLVKITAMAHDAIECCSLARRLA 502          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 3.330e-39
Identity = 92/186 (49.46%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  427 FGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            F  Q++S AG  +L R + EAL++I ++I+AP      A  +    E  D E+ R L  L  MA  LGE+A SH ED  ++ +E  L+   KAY+ AVR G+CNA+LA+SV+ S+ V+T KTGG+G  G AL LLS+AVP++ GL G+A  AL+TGD  +QTRR+VKI  +A D +ECCSLARRLA
Sbjct:  437 FRVQLSSSAGFDSLIRENPEALEDIHRVIKAPA-----AGSLDFVDEISDMERRRKLGTLVNMAKALGEVALSHTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLA 617          
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 1.020e-37
Identity = 90/186 (48.39%), Postives = 126/186 (67.74%), Query Frame = 1
Query:  427 FGEQVASYAGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLNRLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDRYIQTRRVVKIADIAMDAVECCSLARRLA 984
            F  Q++S AGL +L R   +AL++I+++I +       A  VSP  +  D +  R L  L  M+T LGE+A  H ED  ++ +E  L     AY++AVR G+C A+LA+SV+ S+ V+TSKTGG+G AG A+KL+S+AVP+VGGL  +A  AL+ GD Y+QTRR+VKI  +A DAV+CC LARRLA
Sbjct:  410 FSAQLSSSAGLDSLIREKPKALEDIQRVIESTV-----AGSVSPDDKLSDIDGRRKLGTLVTMSTALGEVALRHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLA 590          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16944.4954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FPS8_ECTSI3.800e-14593.02Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE5.010e-12585.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI8.480e-4845.74Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
D7FUA0_ECTSI1.230e-4444.58Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
D7FUA1_ECTSI1.260e-4343.58Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7G1L2_ECTSI2.030e-4150.82Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FH89_ECTSI6.240e-4150.54Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7FHA2_ECTSI1.290e-4042.53Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KZF6_9PHAE3.330e-3949.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH90_ECTSI1.020e-3748.39Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16944contigEcto-sp13_S_contig16944:592..3648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score454.5
Seed ortholog evalue4.4e-125
Seed eggNOG ortholog2880.D7FPS8
Model size1059
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons7
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-18_001580.1
EC2.7.11.1
Cds size1059
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16944.4954.1prot_Ecto-sp13_S_contig16944.4954.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16944 592..3648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.4963562-CDS-Ecto-sp13_S_contig16944:591..6641681462887.4963562-CDS-Ecto-sp13_S_contig16944:591..664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16944 592..664 +
1681462887.5197332-CDS-Ecto-sp13_S_contig16944:1084..11561681462887.5197332-CDS-Ecto-sp13_S_contig16944:1084..1156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16944 1085..1156 +
1681462887.5353117-CDS-Ecto-sp13_S_contig16944:1571..16461681462887.5353117-CDS-Ecto-sp13_S_contig16944:1571..1646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16944 1572..1646 +
1681462887.5474162-CDS-Ecto-sp13_S_contig16944:2297..27161681462887.5474162-CDS-Ecto-sp13_S_contig16944:2297..2716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16944 2298..2716 +
1681462887.563607-CDS-Ecto-sp13_S_contig16944:2957..31251681462887.563607-CDS-Ecto-sp13_S_contig16944:2957..3125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16944 2958..3125 +
1681462887.574834-CDS-Ecto-sp13_S_contig16944:3248..33681681462887.574834-CDS-Ecto-sp13_S_contig16944:3248..3368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16944 3249..3368 +
1681462887.58307-CDS-Ecto-sp13_S_contig16944:3516..36481681462887.58307-CDS-Ecto-sp13_S_contig16944:3516..3648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16944 3517..3648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16944.4954.1

>prot_Ecto-sp13_S_contig16944.4954.1 ID=prot_Ecto-sp13_S_contig16944.4954.1|Name=mRNA_Ecto-sp13_S_contig16944.4954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=353bp
GSIPEALGALSKLKELRLSNNKLSGTVPEGLGGLTGLRGLLLNDNNLEGV
IPEALGALSELKRLDLSNNGSITGGPEHGNLDSWRAKTQPQQQREAEQDE
PKEEADVAQHSPRSQDAETVETDMVHPGPSSPAEEERDAGHSFGEQVASY
AGLAALTRGDREALDEIKQLIRAPPVRAPPADGVSPAPEPIDEEKLRDLN
RLAEMATTLGEIASSHMEDQWMREREQGLSHARKAYFNAVRDGVCNAFLA
SSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIAAAALKTGDR
YIQTRRVVKIADIAMDAVECCSLARRLALRLAEGIAIGASMADTIAGTIG
GTG
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mRNA from alignment at Ecto-sp13_S_contig16944:592..3648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16944.4954.1 ID=mRNA_Ecto-sp13_S_contig16944.4954.1|Name=mRNA_Ecto-sp13_S_contig16944.4954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3057bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16944:592..3648+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCCATCCCGGAGGCTCTGGGAGCTCTAAGCAAGCTCAAAGAGCTTAG ACTCAGCAACAATAAGCTTTCAGGTGAGGCAGGCTTGCCGTTTGCTCCCT GCTCGTCGATGTGATACAACCCACGTGGGGGTTTAATTTTTACCAAGGCA GTCTCAAGAAAAGTCGCCGTTTTCGTACTCGTGCTTCACGCTGTCACTAC GGAGCGTCGCCAGCTTCGTGCGTCATGCGAGGTCCTCGATCTCCTTGTGT TCCACTCTTTCGCTGTATCCTTGGCAGGGTTTTTCGTTGAAGTGAGCATG TCGGATAAAGCACGCAATCGGGGAGGTTGGGTCATGGACCGGGCCTGCGT ACCCTCTCCCTCTTCTGTTTCCTCATAAAATGCATTTCTCGCGTAGGCAA CCCCTCTTGTATCTTGGCGGGACGTTTGTAGCTTGAGGCCGGCGCGGCGA AATTGACACTCTCCCAACGCTTTGGCTTGCGCACCCCGCAAAGGAACCGT GCCGGAGGGGCTCGGAGGCCTAACAGGTCTGAGAGGGCTCCTGCTCAACG ACAACAACCTGGAAGGTGCGTGTCGTGTAACATTTGACTTTTGTCGAGTT TCAGTGATGAGATTATCAGTAGACTGCTGAATCCCTTTATGGGCAAGGCC GAGCACTCTTGGCAAGTCAAAGAAAAAATAAGGAAACACACGCCCCCGGC CTCCTGGTCGATACCCTCGTAATTTGCCTATCAAGCGTACAAAAATACAC GCACACACATGGACCTGCACACCGTCCCTCTCAGCTTGGCGAGCTTGCAA AGTTTGTCGATTATTGACAAATGTTGATCTCACCACTAGAGAATGTTTCG TTGTCACCAGAAACACGCCTGGCACTTGTTGTGTGGAACTGGTAAAGACA CGCGATACAATTTTCCGTTTTCATGTCCTGTGAAGTTACCTCGCGTTTCG ATCTGTTGCTGCTTCCGGCTGCTGGTGCAGGAGTCATCCCTGAGGCGCTG GGAGCTCTGAGCGAGTTGAAGAGGCTTGACCTCAGCAACAACGGCAGCAT CACGGGTGACTGATAACGTTGCCCTGTTGATCACGTGCCTACTCGTCGCG GCACATGGAAGATGCGCGTTCAGTAGAGTCGACCCTATTGAACTTATGCA CCATGTGATTCCCGTTGGTCGCGTCTTCGAATTACAAAACACACGAAAAG ACACGGCAATTCACGACGCGTGTCTGTGGATTGTATGTTTGATTGGCTAT GTCCCATGACACCGGCATTTGCGAAGTGTCTGTAATACAAGATGAACCGA TGGGTGTACAAGAGGTTTTGTCCCCGGGAAAACGCCGGACGACTTTGTGA GCGAGCTACCATGGTGATTTCTCGGCCAAGGAAATCGAAGCGAAAACGAA CATGGCGGCGTGTATTAATGGTCGAGGTCGAGTACTGGTCTCATCATCGA CCTTCCAGAGGAATCGTGATCTACGCGAAGTGCCGCTCAAACGGCGGAGA TCCGAACAGCTATTGTCCATTCAAAAGCGGAGACGAGTAGATACCCTTGA GTACATTGCACGGCATGCTTGATGTGGGAATGCTCGAAGTAGCTAGGTGT ATCGTTGACGTGCTCGACCGTACACTGCTCCAACGGCCGGAGCCTGGAAT AACGAGAAAGCCGGTATATTGGATCTGTGCTTGCCTTGCATTTTGTGGTG ACCCAGGCGGGCCTGAACATGGGAATCTTGACTCGTGGAGGGCAAAAACA CAGCCGCAGCAGCAGCGGGAAGCTGAGCAAGATGAGCCAAAAGAGGAAGC CGATGTTGCGCAGCACAGCCCCCGATCACAAGACGCGGAGACGGTGGAAA CAGATATGGTCCACCCTGGACCCTCCTCCCCAGCGGAGGAGGAGAGAGAC GCGGGTCACTCGTTTGGGGAGCAAGTTGCTTCCTATGCGGGTTTGGCTGC GCTTACTAGAGGGGATCGCGAGGCTCTGGACGAGATTAAACAGCTCATCA GAGCACCACCCGTCAGGGCACCACCCGCTGATGGCGTTTCTCCGGCCCCA GAGCCTATCGACGAAGAAAAGCTCCGGGATCTCAATAGGCTGGCGGAAAT GGCCACGACTCTGGGCGAGATTGCTGTGAGTGTCCCGGTGTAGACAACGT TTATTTCGACACACAGCAACAGTGTGCAAGGGCTAAGCTGACACGATCTA GCTGATTCCACGTGATGCGCATTGAGTATGCCGCACCAAAGCAATCACTG CCATTCCTTGTAGAGGGTCTCTGTCCAGGCCACTATCAAACATGCATTGA GCAATCGTGCCCTGTGCGTGCGCTCTTCTCGAAAAAAATCTCCGTTCGTT ATGGTCGGGTGAGCAGTCCAGCCACATGGAGGATCAGTGGATGCGAGAGA GGGAGCAGGGTTTGTCGCATGCGCGCAAGGCGTACTTCAACGCCGTCCGG GATGGCGTATGCAACGCGTTCCTCGCTTCCAGCGTCGTCGGCAGCAACTT GGTTGCCACCAGCAAGACCGGTGGGATAGGGACGGTAAGCGCTGCTGTGG GTTGAGACCTGATTAGTCGTTTCGATGTTTTTCGTGTGTTTGTTGTATGA GATGCATGTGGCGCGTGCACCCCAGTCTTAGCCCGATGTGCTCTTCTTGT TGTGTAGGCAGGAAAGGCCTTGAAACTGCTGTCTGCCGCGGTTCCTATGG TTGGAGGGCTGGGAGGCATCGCAGCGGCGGCTTTGAAGACGGGAGACCGC TACATCCAGACTCGGCGAGTAGTGAAGGTAAGCCTCTCCTCATACGTCTA CGGTAGGTCGACGTCGTGACATATTTAGGTTCCGGCCGCCTCTCTTGCCC CCGACGTGACATAACCCTGACAAAAATTTCCTTGACAGAATTGTACGCCA ACCAACCTTGTTGTTGCTTTGACAGATCGCCGACATCGCGATGGACGCGG TTGAGTGCTGTTCGCTGGCAAGGAGATTAGCGTTGCGACTCGCCGAAGGC ATTGCGATTGGCGCCTCCATGGCCGACACGATAGCGGGCACGATCGGCGG GACTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16944:592..3648+

>mRNA_Ecto-sp13_S_contig16944.4954.1 ID=mRNA_Ecto-sp13_S_contig16944.4954.1|Name=mRNA_Ecto-sp13_S_contig16944.4954.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16944:592..3648+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCCATCCCGGAGGCTCTGGGAGCTCTAAGCAAGCTCAAAGAGCTTAG
ACTCAGCAACAATAAGCTTTCAGGAACCGTGCCGGAGGGGCTCGGAGGCC
TAACAGGTCTGAGAGGGCTCCTGCTCAACGACAACAACCTGGAAGGAGTC
ATCCCTGAGGCGCTGGGAGCTCTGAGCGAGTTGAAGAGGCTTGACCTCAG
CAACAACGGCAGCATCACGGGCGGGCCTGAACATGGGAATCTTGACTCGT
GGAGGGCAAAAACACAGCCGCAGCAGCAGCGGGAAGCTGAGCAAGATGAG
CCAAAAGAGGAAGCCGATGTTGCGCAGCACAGCCCCCGATCACAAGACGC
GGAGACGGTGGAAACAGATATGGTCCACCCTGGACCCTCCTCCCCAGCGG
AGGAGGAGAGAGACGCGGGTCACTCGTTTGGGGAGCAAGTTGCTTCCTAT
GCGGGTTTGGCTGCGCTTACTAGAGGGGATCGCGAGGCTCTGGACGAGAT
TAAACAGCTCATCAGAGCACCACCCGTCAGGGCACCACCCGCTGATGGCG
TTTCTCCGGCCCCAGAGCCTATCGACGAAGAAAAGCTCCGGGATCTCAAT
AGGCTGGCGGAAATGGCCACGACTCTGGGCGAGATTGCTTCCAGCCACAT
GGAGGATCAGTGGATGCGAGAGAGGGAGCAGGGTTTGTCGCATGCGCGCA
AGGCGTACTTCAACGCCGTCCGGGATGGCGTATGCAACGCGTTCCTCGCT
TCCAGCGTCGTCGGCAGCAACTTGGTTGCCACCAGCAAGACCGGTGGGAT
AGGGACGGCAGGAAAGGCCTTGAAACTGCTGTCTGCCGCGGTTCCTATGG
TTGGAGGGCTGGGAGGCATCGCAGCGGCGGCTTTGAAGACGGGAGACCGC
TACATCCAGACTCGGCGAGTAGTGAAGATCGCCGACATCGCGATGGACGC
GGTTGAGTGCTGTTCGCTGGCAAGGAGATTAGCGTTGCGACTCGCCGAAG
GCATTGCGATTGGCGCCTCCATGGCCGACACGATAGCGGGCACGATCGGC
GGGACTGGT
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