mRNA_Ecto-sp13_S_contig16941.4953.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16941.4953.1
Unique NamemRNA_Ecto-sp13_S_contig16941.4953.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16941.4953.1 vs. uniprot
Match: D7G5G7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5G7_ECTSI)

HSP 1 Score: 477 bits (1227), Expect = 6.040e-158
Identity = 297/381 (77.95%), Postives = 307/381 (80.58%), Query Frame = 1 
Query:    1 MSALQNMNGLNGVGENQGREKQXXXXXXXXXXXXXXGHLLLPASQKAIRDLAYALEKDSDDWHSEREKWAKERAALEASLGYKESHMQVLKKENKRLARVVGDAKRENERHARESSRLRDEKADLLARNARLDARNLEVRKQIEALAERNRKLKVTVEREVLGDINLSSAASGNTNNSKRPAAVDRSPQEAASSSVQLEGGIQSIVVPNHRRRPAETIAPGRGSNASTHRXXXXXXXXSDTDEVVTPRSTAPGEDHAPPPAVTAASMRNHSEPVGQGTKGWRLATEAAKAAHTIRQGSEMVEAAPRGGGKGGQTGXGGGETRVSGRVESSRLEEKCNGASARDDEALPGYDSRHRAPPHGPQDGQGLPSGEGRGIRSDRSR 1143
            MSALQN+NGLNGVGENQGR++Q   XXXXXXXXXXXGHLLL ASQKAIRDLAYALEKDSD WHSEREKWAKERAALEASLGYKESHMQVLKKENKRLARVVGDAK                                  RKQIEALAERNRKLK TVERE+L DIN +SAASGN+NNSKRPAAVDR PQEAASSSVQLEGGIQSIVVPN RRRPAETIAP RGSNASTHRXXXXXXXX    EVVTPRSTAPGEDH PPPAVTAAS RNH+E VGQG KGWRLATEAAKA HTIRQGS MVEAAPR GGKGG T X       SGRVESS LEE+C GA+ARDDE LPG+DSRHRA PHGP  GQGLPSGE R IR DRSR
Sbjct:    1 MSALQNINGLNGVGENQGRDQQQPQXXXXXXXXXXXGHLLLSASQKAIRDLAYALEKDSDGWHSEREKWAKERAALEASLGYKESHMQVLKKENKRLARVVGDAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKQIEALAERNRKLKATVERELLDDINPNSAASGNSNNSKRPAAVDRRPQEAASSSVQLEGGIQSIVVPNPRRRPAETIAPSRGSNASTHRXXXXXXXXXXXXEVVTPRSTAPGEDHEPPPAVTAASTRNHAEAVGQGVKGWRLATEAAKATHTIRQGSGMVEAAPRAGGKGGHTXXXXXXXXXSGRVESSPLEEECKGATARDDEVLPGFDSRHRASPHGPHHGQGLPSGERRRIRRDRSR 381
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16941.4953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5G7_ECTSI6.040e-15877.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16941contigEcto-sp13_S_contig16941:1765..3797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1212
Hectar predicted targeting categoryother localisation
Exons3
Cds size1212
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.4521887-CDS-Ecto-sp13_S_contig16941:1764..19461681462887.4521887-CDS-Ecto-sp13_S_contig16941:1764..1946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16941 1765..1946 +
1681462887.460852-CDS-Ecto-sp13_S_contig16941:2247..23191681462887.460852-CDS-Ecto-sp13_S_contig16941:2247..2319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16941 2248..2319 +
1681462887.468994-CDS-Ecto-sp13_S_contig16941:2839..37971681462887.468994-CDS-Ecto-sp13_S_contig16941:2839..3797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16941 2840..3797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16941.4953.1prot_Ecto-sp13_S_contig16941.4953.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16941 1765..3797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16941.4953.1

>prot_Ecto-sp13_S_contig16941.4953.1 ID=prot_Ecto-sp13_S_contig16941.4953.1|Name=mRNA_Ecto-sp13_S_contig16941.4953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=404bp
MSALQNMNGLNGVGENQGREKQQQHEQGGGGGGGEGGHLLLPASQKAIRD
LAYALEKDSDDWHSEREKWAKERAALEASLGYKESHMQVLKKENKRLARV
VGDAKRENERHARESSRLRDEKADLLARNARLDARNLEVRKQIEALAERN
RKLKVTVEREVLGDINLSSAASGNTNNSKRPAAVDRSPQEAASSSVQLEG
GIQSIVVPNHRRRPAETIAPGRGSNASTHRRRRRRSENSDTDEVVTPRST
APGEDHAPPPAVTAASMRNHSEPVGQGTKGWRLATEAAKAAHTIRQGSEM
VEAAPRGGGKGGQTGGGGGETRVSGRVESSRLEEKCNGASARDDEALPGY
DSRHRAPPHGPQDGQGLPSGEGRGIRSDRSRSSDSCGNGRHGRNGRHNSA
TLSP
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mRNA from alignment at Ecto-sp13_S_contig16941:1765..3797+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16941.4953.1 ID=mRNA_Ecto-sp13_S_contig16941.4953.1|Name=mRNA_Ecto-sp13_S_contig16941.4953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2033bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16941:1765..3797+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGCTTTGCAAAACATGAATGGTTTGAACGGAGTCGGCGAGAACCA
AGGCAGAGAAAAGCAGCAACAACACGAGCAAGGAGGAGGAGGAGGAGGAG
GAGAAGGAGGGCATCTGCTGCTGCCGGCGTCTCAAAAAGCAATCCGCGAC
CTGGCCTATGCACTGGAAAAGGATAGCGATGAGTAAGTAGCTCATTTGCA
CTGGTATGATTTCTCTTGCTTACGTTATTTGCGCAGGCTTCCCCCCCGCT
GATAAGATCTCACACATGCATGCCGTCAGCTGCCATGCATCACAACCGCC
GTAACTGATGCCGTGTTAACGAGGATAGCGACCTCGCGGCATTCTCTTTG
CATATGCCTGACCGTTAGTGGCGTATGCGCAGAGAAGCGCTGGGAATAAA
GAAACATACACGCCTGTTTGACGCTTTCATTTGGCCATTATGTGCGTACC
ATGTGCATATCAATGCTAAACTGCGTTTCGCAGTTGGCACTCGGAGAGAG
AGAAATGGGCCAAGGAACGGGCGGCGCTGGAAGCCAGCCTCGGCTACAAG
GAGAGGTACGTCTTCTGTCCTGCGAACCTCCGGAATACATGTGTATCAAC
GCGCACAGCAGGTTCCCGAGAGAGAGTGTTGATGGGAATTGATGGTCTTG
CATGTGTACGACGGACGGCTACACAAGGTTGAGCGAAGTTCGAATACTCG
TGCTGTACCTTCGCTGCGTGCATTGGGATCAAAACAATTGGAAACGCATA
TGCCTCTGCATATGTGCCGGCCTTGGCGTCACCATCTCGAGGCAGTATAC
CACTACTTTTGCGCAGACTTTCGTGCAAATCCTAGGGCTTACATGCCGCA
AATGGTGACGTCCTCTATGAACTTTAGGACATGTTCAACGTGCAATGATC
TGCATTTGTACGATACCGTGCGAGCTCGAAAACCACAGCGGGACAGGAAG
GCCGACCCTCTCATCATGTCCGAACGGTCTCTGTTACTACAACACGCCAA
AGTACCGCCGGAAAACCAAGCTAATGCGATGACCTCCGCTTGTGCGTGGT
ATTTTTTTGCTCTCGTCGTAAGCAGCCACATGCAAGTCCTGAAGAAGGAA
AACAAGAGGCTGGCCCGCGTTGTCGGTGACGCCAAGCGCGAGAACGAGCG
GCATGCTCGCGAATCATCGCGCCTCAGGGACGAGAAAGCGGACCTGCTCG
CACGAAACGCCAGGCTTGATGCGCGGAACCTAGAGGTGCGTAAACAGATC
GAGGCGCTGGCGGAGCGGAACCGCAAGCTCAAGGTTACCGTGGAGCGCGA
AGTGCTTGGTGACATCAACCTCAGCTCAGCCGCCTCCGGCAACACCAACA
ACAGCAAGAGGCCGGCGGCGGTTGATCGGAGTCCCCAAGAAGCAGCATCA
TCGTCGGTGCAACTCGAAGGTGGCATCCAGAGCATCGTCGTTCCCAACCA
CCGCCGTCGCCCGGCTGAGACTATCGCCCCCGGCCGCGGTAGCAACGCCA
GCACGCACCGACGGCGACGGCGACGAAGCGAGAACAGCGATACCGACGAG
GTCGTCACGCCGCGGAGTACGGCTCCCGGTGAAGACCACGCACCGCCGCC
TGCAGTGACAGCAGCGTCAATGCGAAATCACTCAGAGCCCGTGGGCCAAG
GTACAAAGGGGTGGCGTCTGGCAACGGAGGCGGCCAAAGCAGCCCACACG
ATTCGGCAAGGGTCGGAAATGGTCGAGGCGGCCCCGCGTGGTGGTGGCAA
AGGCGGCCAAACGGGTGGAGGGGGTGGAGAGACGCGCGTTTCCGGAAGGG
TCGAGAGTAGCCGGCTGGAAGAGAAATGCAACGGTGCGAGCGCACGTGAC
GACGAAGCCCTCCCCGGCTATGACTCACGCCACCGCGCTCCTCCTCATGG
ACCCCAAGATGGACAAGGCCTTCCCTCGGGAGAAGGCAGGGGAATCCGAA
GCGACCGCAGCAGGTCAAGCGACAGCTGCGGCAATGGTAGACACGGGAGG
AATGGCAGACACAACAGTGCTACTTTGTCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16941:1765..3797+

>mRNA_Ecto-sp13_S_contig16941.4953.1 ID=mRNA_Ecto-sp13_S_contig16941.4953.1|Name=mRNA_Ecto-sp13_S_contig16941.4953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16941:1765..3797+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGCTTTGCAAAACATGAATGGTTTGAACGGAGTCGGCGAGAACCA
AGGCAGAGAAAAGCAGCAACAACACGAGCAAGGAGGAGGAGGAGGAGGAG
GAGAAGGAGGGCATCTGCTGCTGCCGGCGTCTCAAAAAGCAATCCGCGAC
CTGGCCTATGCACTGGAAAAGGATAGCGATGATTGGCACTCGGAGAGAGA
GAAATGGGCCAAGGAACGGGCGGCGCTGGAAGCCAGCCTCGGCTACAAGG
AGAGCCACATGCAAGTCCTGAAGAAGGAAAACAAGAGGCTGGCCCGCGTT
GTCGGTGACGCCAAGCGCGAGAACGAGCGGCATGCTCGCGAATCATCGCG
CCTCAGGGACGAGAAAGCGGACCTGCTCGCACGAAACGCCAGGCTTGATG
CGCGGAACCTAGAGGTGCGTAAACAGATCGAGGCGCTGGCGGAGCGGAAC
CGCAAGCTCAAGGTTACCGTGGAGCGCGAAGTGCTTGGTGACATCAACCT
CAGCTCAGCCGCCTCCGGCAACACCAACAACAGCAAGAGGCCGGCGGCGG
TTGATCGGAGTCCCCAAGAAGCAGCATCATCGTCGGTGCAACTCGAAGGT
GGCATCCAGAGCATCGTCGTTCCCAACCACCGCCGTCGCCCGGCTGAGAC
TATCGCCCCCGGCCGCGGTAGCAACGCCAGCACGCACCGACGGCGACGGC
GACGAAGCGAGAACAGCGATACCGACGAGGTCGTCACGCCGCGGAGTACG
GCTCCCGGTGAAGACCACGCACCGCCGCCTGCAGTGACAGCAGCGTCAAT
GCGAAATCACTCAGAGCCCGTGGGCCAAGGTACAAAGGGGTGGCGTCTGG
CAACGGAGGCGGCCAAAGCAGCCCACACGATTCGGCAAGGGTCGGAAATG
GTCGAGGCGGCCCCGCGTGGTGGTGGCAAAGGCGGCCAAACGGGTGGAGG
GGGTGGAGAGACGCGCGTTTCCGGAAGGGTCGAGAGTAGCCGGCTGGAAG
AGAAATGCAACGGTGCGAGCGCACGTGACGACGAAGCCCTCCCCGGCTAT
GACTCACGCCACCGCGCTCCTCCTCATGGACCCCAAGATGGACAAGGCCT
TCCCTCGGGAGAAGGCAGGGGAATCCGAAGCGACCGCAGCAGGTCAAGCG
ACAGCTGCGGCAATGGTAGACACGGGAGGAATGGCAGACACAACAGTGCT
ACTTTGTCACCC
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