mRNA_Ecto-sp13_S_contig16940.4952.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16940.4952.1
Unique NamemRNA_Ecto-sp13_S_contig16940.4952.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.150e-38
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:   73 MSTAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 312
            M++ KPTYN MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKF+KMKASYKLSAEAKKPAPK
Sbjct:    1 MASTKPTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.030e-35
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:   79 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAP 309
            TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMR ALKKGVESGKF+KMKASYKLS EAKKPAP
Sbjct:   96 TAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.120e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:  103 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 312
            MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.020e-29
Identity = 62/77 (80.52%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:   76 STAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 306
            +TAKPTY+VMVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKF+K+K+SYKLS EAKKPA
Sbjct:    3 TTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 79
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.190e-29
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:  103 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 312
            MVFDAIK+LKERNGSSIQAIKKSITATYP LNFTPHQMRSALKKGVE+GKF+K+K+SYKLSAEAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYPALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.620e-25
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:  103 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPA 306
            MVFDAIK LKER GSS+ A+KK I ATYP+LNFTPHQMRSALKKG ESGKF+K+K+SYKLS EAKKPA
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSLNFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKPA 68
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 9.360e-22
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:  103 MVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLS 285
            MVFDAIKTLKERNGSSIQA+KKSITATYP L+FTPHQMRSALKKGVE+GKF+K++ +  L+
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYPALHFTPHQMRSALKKGVETGKFIKVRHALPLA 61
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 3.880e-21
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:   88 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKP 303
            PTY+ M   AI  LKERNGSS+ AIKK I ATYPTLNF PHQ+R ALKKG E+G F+K+KASYK+S EAKKP
Sbjct:    2 PTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTLNFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKP 73
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 6.290e-20
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:   88 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 312
            PTY+ M  +A+K LKERNGSS+ AIKK ITA+YP+L FT H MRSALKKGVESGKF+K+K SYKLSA  ++PA K
Sbjct:    2 PTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLTFTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEPAAK 76
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BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.150e-18
Identity = 48/67 (71.64%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:   88 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRSALKKGVESGKFVKMKASYKLSA 288
            PTY+ M  +A+K LKERNGSS+ AIKK ITA+YP+L FT H +RSALKKGVESGKF+K+K SYKLSA
Sbjct:    2 PTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLTFTGHFLRSALKKGVESGKFIKVKNSYKLSA 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16940.4952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI3.150e-3893.75Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KCU1_9PHAE1.030e-3596.10H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE3.120e-33100.00H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D7G4I5_ECTSI1.020e-2980.52H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI1.190e-2990.00H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE4.620e-2580.88H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K9S6_9PHAE9.360e-2280.33H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI3.880e-2170.83H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI6.290e-2069.33H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JIM8_9PHAE4.150e-1871.64H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16940contigEcto-sp13_S_contig16940:71..2704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score156.0
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D7G189
Preferred nameH1
Model size1840
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
Exons3
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
Cds size489
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.3862684-UTR-Ecto-sp13_S_contig16940:70..1421681462887.3862684-UTR-Ecto-sp13_S_contig16940:70..142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16940 71..142 +
1681462887.4210677-UTR-Ecto-sp13_S_contig16940:1425..27041681462887.4210677-UTR-Ecto-sp13_S_contig16940:1425..2704Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16940 1426..2704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.396517-CDS-Ecto-sp13_S_contig16940:142..1721681462887.396517-CDS-Ecto-sp13_S_contig16940:142..172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16940 143..172 +
1681462887.4046388-CDS-Ecto-sp13_S_contig16940:614..7731681462887.4046388-CDS-Ecto-sp13_S_contig16940:614..773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16940 615..773 +
1681462887.4126148-CDS-Ecto-sp13_S_contig16940:1125..14251681462887.4126148-CDS-Ecto-sp13_S_contig16940:1125..1425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16940 1126..1425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16940.4952.1prot_Ecto-sp13_S_contig16940.4952.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16940 143..1425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16940.4952.1

>prot_Ecto-sp13_S_contig16940.4952.1 ID=prot_Ecto-sp13_S_contig16940.4952.1|Name=mRNA_Ecto-sp13_S_contig16940.4952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MSTAKPTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTLNFTPHQMRS
ALKKGVESGKFVKMKASYKLSAEAKKPAPKKKVVKKKVVKKVVKKKVPKK
KVVKKPAVKKTTTKKPAAKKATTTKKTVTKKKPTTAKKPAAKKTTTKKKP
STPKKKAAPKKA*
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mRNA from alignment at Ecto-sp13_S_contig16940:71..2704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16940.4952.1 ID=mRNA_Ecto-sp13_S_contig16940.4952.1|Name=mRNA_Ecto-sp13_S_contig16940.4952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16940:71..2704+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATCACCTCACACCCTTGTCAACCCCCCAGTCTCCCAACCCTCAACTTC
TGTGCAGGACCAAGCAGCAGCCATGTCGACCGCCAAACCCACGTACAATG
TGGTGAGTAACCTGCTGTACATACAAAGGTGGAGGCTCCGCTGCGCGTAC
CGATTGAAGAGAGAAATCCTTGTGCAGCATTACGCACGGGCGTTCGCCGA
ACGCTCTTTCATCATGTCCAAATGTCCAAAGCCACAAGTGCGCTACAGAG
TAACCCACGGTAACACGATGAAACGATGCAGGGTCTTATCTTTCTGAAAG
TGTTCGCATGCCCAACGCTATGCAGTACGTGTGTAGTCGTGTAGTCGCAC
CGATAATGCAAAGGGGCCGTTGGTGTCGGCGCGATTGAAGCGAACTCGTC
CATCTGTTGCTGAGCACGGGCTCACGTGAAGGTGGTTTAAAGAAGGCCGC
ACGCACTATGCTCTGTGGAAAAGGTAGGAAGGGTGATCCTTCGCCGATTC
CTTACCCCCATATACCCTCGTGCGCTCCTCTCCTTGCACCACAGATGGTA
TTCGATGCCATCAAGACTCTCAAGGAGCGGAACGGATCCTCCATCCAGGC
CATCAAGAAAAGCATCACCGCCACCTACCCTACCCTCAACTTCACGCCAC
ACCAGATGCGCAGCGCCCTTAAGAAGGGAGTGGAGTCCGGCAAGTTCGTC
AAGGTGAGGCATGAGCGCCTTCTCGTCTGCCCTCTGGCGGGGTCGCTGTT
ACTTGAGCTTCCAACATTCGATCTGATGCTGCACGTACCACCGCAGTGTT
GCCCCACCACTGGTAGCCAAGCGTGCTACGCGTCTGTGTCAGAGAGTTTC
CCTCCTGTGTTCTTCTCACCAGCTGATCTGCCCCGGGGGAAATGCTGTAA
ACCCTTGATATTTTGCTGTAAAGGAGTATGTATCGCAGTCTACATACTAT
TTCGTGTTTGAAGGAGGCCTTGGTTGCTCGAGTTGCAATTTCGCCAAGAG
ATTTCTAACCACGTTCGTTCCTCGACAACGTACATTATTTTCCATCGCCA
AGCAGATGAAGGCCTCGTACAAGCTGAGCGCCGAGGCGAAGAAGCCCGCC
CCCAAGAAGAAGGTGGTGAAAAAGAAGGTGGTCAAGAAGGTCGTCAAGAA
GAAGGTGCCGAAGAAGAAGGTCGTCAAGAAGCCCGCTGTGAAGAAGACCA
CGACGAAGAAGCCCGCCGCCAAGAAGGCCACCACCACCAAGAAGACCGTC
ACCAAGAAGAAGCCCACCACGGCCAAGAAGCCCGCGGCTAAGAAGACCAC
CACCAAGAAGAAGCCCTCCACCCCCAAGAAGAAGGCTGCCCCCAAGAAGG
CCTAGGCTTACAACCATCTCCCGTCTCCTCGAGTGAGATGTTTTCCGTCT
TGCTTCAACAAACCACCTGGTGTTTACTAAACACCACCCATCCGACCAAA
GAAAGCAGCACCCCAAGTACTCTGCCAACCAAAAATGGGTTTGGTGTTTA
GTTTGGTGCGGCAAGACAGGTACGATTAACTAATGAGTCATGAAAACATC
ACGGTGCGAGCCGCGTTCGGAGTCGGGACATGGGTATTATGAAGGTCTCC
TCTGTTGACGGTGAACAGAAACTCAACACAACTCCACCACCTTGACGGCT
CGTATGTGCCAACTCACCCCCCGATACCAGCATCGGTGTTCGAAGTGAAG
GCAATGTAGCGAGTATTATTTAAGACGAGGTTGGGGGCAACGGTCCGTTA
GTGCTAATTTACAAACGCACGGAGGATCATTCGTCAAGATTGCAGCAGCA
TCCAGTCGGCTTTGGAGGCTACCAGTAGTTAGTTTTTTGCAGACAGGGCG
GAAATGTGACGTATACGGTACATCTCTAATCTGCTCGACCCTTGCTACAA
CATGGTGTGACTCTGATCTGTCTGCCTATCTCACCTGGTGTTGTATTGCC
GGTACGCCTGGTTGCCTTTCTTCTTTTGTCAATATGGAGACTTCGCAACA
GTATGAATGCACTCCGACTGTGAGTAGATGCATGGGGAATTTATCCGGCG
ACCTCATTCTGTGACGTGTGGGTCGCCGGCTCCACCTTCAAGTAAAATGA
CCTCAGGCTGAGAAGTGCCAAGGGCGCCAAATACCGTTGGTGCTGATTGG
TTGGAGTGATCAGGGACGATTGGATGGCGGCTTTGTTTTGGGATATGTTA
TAGTCGTGTGTCCAAGTTTTTTTCCGTCTATTACAGCACTCGCCGCTAGA
AGCCATTTACTTTTCCAGAGGCTCGCCTCTATTTTGTCTCACGTTGTACA
GGTAACCTCACGGCGGCTAAATAGGTTGTAGTGTTGTAGGCTTCTTGAGT
GAGCGCCTGTTCTTCGGCTCAAGAGTTATTCTGCTCGTTCTGTATGTAGA
CTAGTTGGGGACAGCACTTGCGACGAGATGTGTACGCGAAATGTACATCG
CGTGATTTTGTGGCCGTATTGTACACGAGTTAGATGCTTTGCTAGGCCAA
CCAAAGCTCGGTACGCCCATGAGCGTGCGTGCGTGAAAAGCTTCGCCGGA
CAAACTTTGTGCGGACGAGCATGTCAACGAGCTTCAAGTCACCGATTCCG
TTTTTCCCTGCTCTACACGGCGGCAAGCCTCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16940:71..2704+

>mRNA_Ecto-sp13_S_contig16940.4952.1 ID=mRNA_Ecto-sp13_S_contig16940.4952.1|Name=mRNA_Ecto-sp13_S_contig16940.4952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16940:71..2704+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGACCGCCAAACCCACGTACAATGTGATGGTATTCGATGCCATCAA
GACTCTCAAGGAGCGGAACGGATCCTCCATCCAGGCCATCAAGAAAAGCA
TCACCGCCACCTACCCTACCCTCAACTTCACGCCACACCAGATGCGCAGC
GCCCTTAAGAAGGGAGTGGAGTCCGGCAAGTTCGTCAAGATGAAGGCCTC
GTACAAGCTGAGCGCCGAGGCGAAGAAGCCCGCCCCCAAGAAGAAGGTGG
TGAAAAAGAAGGTGGTCAAGAAGGTCGTCAAGAAGAAGGTGCCGAAGAAG
AAGGTCGTCAAGAAGCCCGCTGTGAAGAAGACCACGACGAAGAAGCCCGC
CGCCAAGAAGGCCACCACCACCAAGAAGACCGTCACCAAGAAGAAGCCCA
CCACGGCCAAGAAGCCCGCGGCTAAGAAGACCACCACCAAGAAGAAGCCC
TCCACCCCCAAGAAGAAGGCTGCCCCCAAGAAGGCCTAG
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