mRNA_Ecto-sp13_S_contig16912.4941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: D7G727_ECTSI (Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G727_ECTSI) HSP 1 Score: 451 bits (1160), Expect = 2.940e-155 Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 1
Query: 1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSG FTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDES MPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG
Sbjct: 267 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGTFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESQMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 498
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A835ZBZ4_9STRA (Coatomer subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ4_9STRA) HSP 1 Score: 246 bits (628), Expect = 2.420e-75 Identity = 136/243 (55.97%), Postives = 175/243 (72.02%), Query Frame = 1
Query: 1 QGMKLG---GASKSKN-MLDSLIKEDHLVSIPSASKASAGGTEAAVP---AAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGA-FTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVR-PMELHDVRISIPLGSSAVPE--IAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
+GMKLG G +K +N MLDSL+ E+ L +P+A +AGG A +P AA AA+V+PVSL +EE+LS LTREGTLE +EVKGTLSLTAN +GA++CK+VLA+ P A FQTHPKVN+ +YD+++ LA KD KGFPV RPVGVLRWSL T+DE+ PLT+NCWPE EG G + VS+EY L R ELHDV IS+PLG +A P +A G++RH G L+W ++L+D SN +G
Sbjct: 241 KGMKLGLGGGTAKGRNAMLDSLMAEEKLAPVPAA---AAGGAPAVLPEVTAAATAAAVYPVSLVMEEKLSAHLTREGTLEQLEVKGTLSLTANDEGASRCKIVLAAGGPVPAGLAFQTHPKVNRALYDASRALALKDAGKGFPVGRPVGVLRWSLATSDEAAAPLTVNCWPEDEGNGSVAVSLEYALGRGARELHDVVISVPLGGAAAPPRVTSADGGAYRHDAAAGALVWRLELIDNSNASG 480
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A4D9DAV0_9STRA (Coatomer subunit delta n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAV0_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.170e-66 Identity = 121/241 (50.21%), Postives = 170/241 (70.54%), Query Frame = 1
Query: 1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSAS----KASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTD----PSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELV-RPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
+GMKLG SK+ +MLDSL++ED+L +I + A AG E AV A V+ P+ L+VEE++ LTR+G +++ EVKG+L+LTA ++ A KV LA+ P+G FQTHPKVNK YDS + L KD +KGFPV R VGVLRWS ++TD+S +P+T+NCWPE EG G+MN+S+EY++ + ELH+V +SIPLG++ PE+A+IDG++RH +E L+W MDL+D SN +G
Sbjct: 249 KGMKLGAPSKAASMLDSLVQEDNLSNIAATRAPPLSAGAGLGEEAVSAPVI--QHQPIQLAVEEKIVAHLTRDGAIDTFEVKGSLTLTATTEAAALSKVALAAGGARPVPAG-LNFQTHPKVNKQEYDSNRVLVLKDTSKGFPVGRAVGVLRWSYSSTDDSVVPITLNCWPEEEGQGKMNISIEYQMNGQSQELHNVNVSIPLGTAEPPEVASIDGTYRHDPREQRLIWHMDLVDASNSSG 486
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: F0YG49_AURAN (Coatomer subunit delta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG49_AURAN) HSP 1 Score: 214 bits (546), Expect = 2.070e-63 Identity = 114/232 (49.14%), Postives = 152/232 (65.52%), Query Frame = 1
Query: 1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
+ MKLGG +++D + ED +SI A S + + P+SL VEE+L+ L++EG LES ++KGTLSLTAN +GA CKV +A + TFQ HPKV+K +++ + KD +KGFPV RPVGV+RWSL+TTDE+ +PLTINCWPE EG G MNV++EYEL RPMEL+DV I IP G PEI ++DGSH H +E L W +D++D SN+ G
Sbjct: 226 KSMKLGGKKNKSSLMDKMAAEDG-ISIAPAFTPSKPASXXXXXXXXXXXAAQPISLIVEEKLTVALSQEGALESFDLKGTLSLTANDEGAALCKVQIADKAAAPGTTFQVHPKVSKKDWEADGAVMMKDASKGFPVGRPVGVVRWSLSTTDEALVPLTINCWPEDEGDGVMNVNVEYELKRPMELYDVVIRIP-GCGNAPEIVSVDGSHTHDAKEEVLDWKLDMVDGSNKQG 455
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S2HPZ3_9STRA (Coatomer subunit delta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPZ3_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.360e-63 Identity = 110/233 (47.21%), Postives = 159/233 (68.24%), Query Frame = 1
Query: 1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVA-ASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAID-GSHRHLTQEGTLLWTMDLLDQSNRT 693
+GMKLGG+SK + ++D + ED+L P ++K + +A PA A + HPVSL +EE+++ + REG LE ME+KGT++L AN D +KCKV+LA + FT+QTHPKV+K Y+ L KD+ KGFP + +G+LRWS+NT D+S +P++INCWPE E G MNV++E+ MELH+V+ISIPLG+S PEI ++D GSH+H L+W ++L+D N+T
Sbjct: 54 KGMKLGGSSKKQQIMDKFVSEDNLA--PLSAKGNDTSGKAMTPATAAAPVATHPVSLLLEEKVAVTMNREGALELMEIKGTMALVANGDEFSKCKVILAGAK-NPLFTYQTHPKVDKKAYEKENILCLKDKNKGFPKGK-LGILRWSMNTQDDSQVPISINCWPEDEDGN-MNVNVEFNAEGDMELHNVQISIPLGTSNPPEIVSMDTGSHKHNRTNEVLIWDIELIDGQNKT 281
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A024GKI5_9STRA (Coatomer subunit delta n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024GKI5_9STRA) HSP 1 Score: 213 bits (541), Expect = 2.500e-62 Identity = 118/234 (50.43%), Postives = 157/234 (67.09%), Query Frame = 1
Query: 4 GMKLGGA-SKS-KNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRP-MELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
GMKLGG+ SKS K+ LD++ ED L ++P + SA AVP VA S PV + VEE+++ QLTREG +E +E+KG+L +T N + +C++ L + PS T QTHPKV+K ++D L KD +K FP +R VGVLRWS T DES++PL I CWPE E GG++NVSMEY + RP M+L +V I IPLGSS P+IA IDG +RH +G LLW +D +D SN +G
Sbjct: 263 GMKLGGSGSKSGKSFLDAMAAEDDLKAVP---QMSAPVDAVAVPQPQVAVSKDPVGIVVEEKIAVQLTREGNMEQLEIKGSLFVTVNDPASGRCRLRLRAL-PSSEITVQTHPKVDKKLFDQDSILGLKDSSKSFPSSR-VGVLRWSFKTQDESYLPLNITCWPEEESGGKINVSMEYSMERPEMKLENVDILIPLGSSEGPQIAHIDGQYRHKPSDGALLWHLDCIDSSNSSG 491
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S3H6H8_9STRA (Coatomer subunit delta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6H8_9STRA) HSP 1 Score: 212 bits (539), Expect = 3.770e-62 Identity = 115/235 (48.94%), Postives = 154/235 (65.53%), Query Frame = 1
Query: 1 QGMKLGGA-SKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDP-SGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYEL-VRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
+GM L A +K+K++ D+L++ED L + SASK S + AAV PV+LS+ E++S L+REG +E E+KG+L+LTA D A C V L F+F THPKVNK Y+ L K+ KGFP ARPVG+L+W+ + T E +PL INCWPE E GQMNVS+EY + V+ +ELHDVRI IPLG++A P I ++DGSH+H G L+WT+DL+D SN TG
Sbjct: 248 KGMSLNPAGAKNKSVEDALMREDKLAPLISASKNSVSDAPTPLTAAVAQ---QPVTLSIVEKVSATLSREGLVEMFEIKGSLTLTAADDEAALCSVQLKPASARDSVFSFNTHPKVNKAAYEKTGLLQLKEANKGFPSARPVGILKWTHSGTSEELVPLKINCWPEEESRGQMNVSIEYSMDVKGLELHDVRIVIPLGTNAAPTIVSVDGSHKHNASSGELVWTIDLIDASNTTG 479
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S2MQW5_9STRA (Coatomer subunit delta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQW5_9STRA) HSP 1 Score: 209 bits (533), Expect = 2.350e-61 Identity = 110/233 (47.21%), Postives = 159/233 (68.24%), Query Frame = 1
Query: 1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVA-ASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAID-GSHRHLTQEGTLLWTMDLLDQSNRT 693
+GMKLGG+SK + ++D + ED+L P ++K + +A PA A + HPVSL +EE+++ + REG LE ME+KGT++L AN D +KCKV+LA + FT+QTHPKV+K Y+ L KD+ KGFP + +G+LRWS+NT D+S +P++INCWPE E G MNV++E+ MELH+V+ISIPLG+S PEI ++D GSH+H L+W ++L+D N+T
Sbjct: 241 KGMKLGGSSKKQQIMDKFVSEDNLA--PLSAKGNDTSGKAMTPATAAAPVATHPVSLLLEEKVAVTMNREGALELMEIKGTMALVANGDEFSKCKVILAGAK-NPLFTYQTHPKVDKKAYEKENILCLKDKNKGFPKGK-LGILRWSMNTQDDSQVPISINCWPEDEDGN-MNVNVEFNAEGDMELHNVQISIPLGTSNPPEIVSMDTGSHKHNRTNEVLIWDIELIDGQNKT 468
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A8K1CHB9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHB9_PYTOL) HSP 1 Score: 201 bits (510), Expect = 2.370e-57 Identity = 111/233 (47.64%), Postives = 149/233 (63.95%), Query Frame = 1
Query: 4 GMKLGGASKS--KNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
GMKLGGASKS K+ LD++ ED L IP S T+ P V S P+ + VEE+++ L REGTLE +EVKG+L ++ N + C++ L + +G TFQTHPKV+K ++D L KD K FP AR V VLRWSL T DES +PL I CWPE +GGG++NV++EY + R M L +V I IPLGS P++A +DG +H + EG+LLW +D +D SN +G
Sbjct: 318 GMKLGGASKSTGKSFLDAMAAEDDLKEIPPMSAPVQAVTK---PEPTVTVSHDPIGVVVEEKITVVLNREGTLEQLEVKGSLFVSVNDQASACCRLKLRQSAANG-ITFQTHPKVDKRLFDQESVLGLKDATKPFPSAR-VAVLRWSLKTQDESFLPLNIVCWPEEQGGGKINVTIEYSMDRDMVLDNVNILIPLGSRESPQVAHVDGQFQHNSNEGSLLWHLDRVDSSNNSG 545
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S2RJQ4_9STRA (Coatomer subunit delta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJQ4_9STRA) HSP 1 Score: 198 bits (503), Expect = 1.080e-56 Identity = 103/238 (43.28%), Postives = 158/238 (66.39%), Query Frame = 1
Query: 1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTE-----AAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRP-MELHDVRISIPLGSSAVPEIAAID-GSHRHLTQEGTLLWTMDLLDQSNRT 693
+GM+LGG SK + ++D L+ ED+L +PSA+ + A PA V HP+++ +EE+++ L REG +ES+E KGT+ LT+N+ A +C+V++ + F +QT+PKV+K Y+ +A KD +KGFP + VGVLRWS T D+ H+P++INCWPE E G MNV++EY + RP +ELH+V I IPLG+SA P + ++D G+HRH L+W ++L+D+SN++
Sbjct: 266 KGMQLGGGSKKQQLMDKLVTEDNLTPLPSAASTAXXXXXXXXXXVATPAVEV---THPINILLEEKITGALNREGAVESLETKGTMFLTSNTAEACRCQVIMTPAK-NPLFAYQTNPKVDKKAYEQEHRIALKDASKGFPQGKGVGVLRWSAATQDDEHVPISINCWPE-EDGADMNVNVEYSVDRPGLELHNVSIVIPLGTSASPNVLSVDSGTHRHNRSSEELVWEIELIDESNKS 498 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16912.4941.1 >prot_Ecto-sp13_S_contig16912.4941.1 ID=prot_Ecto-sp13_S_contig16912.4941.1|Name=mRNA_Ecto-sp13_S_contig16912.4941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp MKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHback to top mRNA from alignment at Ecto-sp13_S_contig16912:503..3803+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16912.4941.1 ID=mRNA_Ecto-sp13_S_contig16912.4941.1|Name=mRNA_Ecto-sp13_S_contig16912.4941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3301bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16912:503..3803+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16912:503..3803+ >mRNA_Ecto-sp13_S_contig16912.4941.1 ID=mRNA_Ecto-sp13_S_contig16912.4941.1|Name=mRNA_Ecto-sp13_S_contig16912.4941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16912:503..3803+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |