mRNA_Ecto-sp13_S_contig16912.4941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16912.4941.1
Unique NamemRNA_Ecto-sp13_S_contig16912.4941.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: D7G727_ECTSI (Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G727_ECTSI)

HSP 1 Score: 451 bits (1160), Expect = 2.940e-155
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 1
Query:    1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
            QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSG FTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDES MPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG
Sbjct:  267 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGTFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESQMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 498          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A835ZBZ4_9STRA (Coatomer subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ4_9STRA)

HSP 1 Score: 246 bits (628), Expect = 2.420e-75
Identity = 136/243 (55.97%), Postives = 175/243 (72.02%), Query Frame = 1
Query:    1 QGMKLG---GASKSKN-MLDSLIKEDHLVSIPSASKASAGGTEAAVP---AAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGA-FTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVR-PMELHDVRISIPLGSSAVPE--IAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
            +GMKLG   G +K +N MLDSL+ E+ L  +P+A   +AGG  A +P   AA  AA+V+PVSL +EE+LS  LTREGTLE +EVKGTLSLTAN +GA++CK+VLA+  P  A   FQTHPKVN+ +YD+++ LA KD  KGFPV RPVGVLRWSL T+DE+  PLT+NCWPE EG G + VS+EY L R   ELHDV IS+PLG +A P    +A  G++RH    G L+W ++L+D SN +G
Sbjct:  241 KGMKLGLGGGTAKGRNAMLDSLMAEEKLAPVPAA---AAGGAPAVLPEVTAAATAAAVYPVSLVMEEKLSAHLTREGTLEQLEVKGTLSLTANDEGASRCKIVLAAGGPVPAGLAFQTHPKVNRALYDASRALALKDAGKGFPVGRPVGVLRWSLATSDEAAAPLTVNCWPEDEGNGSVAVSLEYALGRGARELHDVVISVPLGGAAAPPRVTSADGGAYRHDAAAGALVWRLELIDNSNASG 480          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A4D9DAV0_9STRA (Coatomer subunit delta n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAV0_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.170e-66
Identity = 121/241 (50.21%), Postives = 170/241 (70.54%), Query Frame = 1
Query:    1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSAS----KASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTD----PSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELV-RPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
            +GMKLG  SK+ +MLDSL++ED+L +I +       A AG  E AV A V+     P+ L+VEE++   LTR+G +++ EVKG+L+LTA ++ A   KV LA+      P+G   FQTHPKVNK  YDS + L  KD +KGFPV R VGVLRWS ++TD+S +P+T+NCWPE EG G+MN+S+EY++  +  ELH+V +SIPLG++  PE+A+IDG++RH  +E  L+W MDL+D SN +G
Sbjct:  249 KGMKLGAPSKAASMLDSLVQEDNLSNIAATRAPPLSAGAGLGEEAVSAPVI--QHQPIQLAVEEKIVAHLTRDGAIDTFEVKGSLTLTATTEAAALSKVALAAGGARPVPAG-LNFQTHPKVNKQEYDSNRVLVLKDTSKGFPVGRAVGVLRWSYSSTDDSVVPITLNCWPEEEGQGKMNISIEYQMNGQSQELHNVNVSIPLGTAEPPEVASIDGTYRHDPREQRLIWHMDLVDASNSSG 486          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: F0YG49_AURAN (Coatomer subunit delta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG49_AURAN)

HSP 1 Score: 214 bits (546), Expect = 2.070e-63
Identity = 114/232 (49.14%), Postives = 152/232 (65.52%), Query Frame = 1
Query:    1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
            + MKLGG     +++D +  ED  +SI  A   S   +           +  P+SL VEE+L+  L++EG LES ++KGTLSLTAN +GA  CKV +A    +   TFQ HPKV+K  +++   +  KD +KGFPV RPVGV+RWSL+TTDE+ +PLTINCWPE EG G MNV++EYEL RPMEL+DV I IP G    PEI ++DGSH H  +E  L W +D++D SN+ G
Sbjct:  226 KSMKLGGKKNKSSLMDKMAAEDG-ISIAPAFTPSKPASXXXXXXXXXXXAAQPISLIVEEKLTVALSQEGALESFDLKGTLSLTANDEGAALCKVQIADKAAAPGTTFQVHPKVSKKDWEADGAVMMKDASKGFPVGRPVGVVRWSLSTTDEALVPLTINCWPEDEGDGVMNVNVEYELKRPMELYDVVIRIP-GCGNAPEIVSVDGSHTHDAKEEVLDWKLDMVDGSNKQG 455          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S2HPZ3_9STRA (Coatomer subunit delta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPZ3_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.360e-63
Identity = 110/233 (47.21%), Postives = 159/233 (68.24%), Query Frame = 1
Query:    1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVA-ASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAID-GSHRHLTQEGTLLWTMDLLDQSNRT 693
            +GMKLGG+SK + ++D  + ED+L   P ++K +    +A  PA   A  + HPVSL +EE+++  + REG LE ME+KGT++L AN D  +KCKV+LA    +  FT+QTHPKV+K  Y+    L  KD+ KGFP  + +G+LRWS+NT D+S +P++INCWPE E G  MNV++E+     MELH+V+ISIPLG+S  PEI ++D GSH+H      L+W ++L+D  N+T
Sbjct:   54 KGMKLGGSSKKQQIMDKFVSEDNLA--PLSAKGNDTSGKAMTPATAAAPVATHPVSLLLEEKVAVTMNREGALELMEIKGTMALVANGDEFSKCKVILAGAK-NPLFTYQTHPKVDKKAYEKENILCLKDKNKGFPKGK-LGILRWSMNTQDDSQVPISINCWPEDEDGN-MNVNVEFNAEGDMELHNVQISIPLGTSNPPEIVSMDTGSHKHNRTNEVLIWDIELIDGQNKT 281          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A024GKI5_9STRA (Coatomer subunit delta n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024GKI5_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.500e-62
Identity = 118/234 (50.43%), Postives = 157/234 (67.09%), Query Frame = 1
Query:    4 GMKLGGA-SKS-KNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRP-MELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
            GMKLGG+ SKS K+ LD++  ED L ++P   + SA     AVP   VA S  PV + VEE+++ QLTREG +E +E+KG+L +T N   + +C++ L +  PS   T QTHPKV+K ++D    L  KD +K FP +R VGVLRWS  T DES++PL I CWPE E GG++NVSMEY + RP M+L +V I IPLGSS  P+IA IDG +RH   +G LLW +D +D SN +G
Sbjct:  263 GMKLGGSGSKSGKSFLDAMAAEDDLKAVP---QMSAPVDAVAVPQPQVAVSKDPVGIVVEEKIAVQLTREGNMEQLEIKGSLFVTVNDPASGRCRLRLRAL-PSSEITVQTHPKVDKKLFDQDSILGLKDSSKSFPSSR-VGVLRWSFKTQDESYLPLNITCWPEEESGGKINVSMEYSMERPEMKLENVDILIPLGSSEGPQIAHIDGQYRHKPSDGALLWHLDCIDSSNSSG 491          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S3H6H8_9STRA (Coatomer subunit delta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6H8_9STRA)

HSP 1 Score: 212 bits (539), Expect = 3.770e-62
Identity = 115/235 (48.94%), Postives = 154/235 (65.53%), Query Frame = 1
Query:    1 QGMKLGGA-SKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDP-SGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYEL-VRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
            +GM L  A +K+K++ D+L++ED L  + SASK S       + AAV      PV+LS+ E++S  L+REG +E  E+KG+L+LTA  D A  C V L         F+F THPKVNK  Y+    L  K+  KGFP ARPVG+L+W+ + T E  +PL INCWPE E  GQMNVS+EY + V+ +ELHDVRI IPLG++A P I ++DGSH+H    G L+WT+DL+D SN TG
Sbjct:  248 KGMSLNPAGAKNKSVEDALMREDKLAPLISASKNSVSDAPTPLTAAVAQ---QPVTLSIVEKVSATLSREGLVEMFEIKGSLTLTAADDEAALCSVQLKPASARDSVFSFNTHPKVNKAAYEKTGLLQLKEANKGFPSARPVGILKWTHSGTSEELVPLKINCWPEEESRGQMNVSIEYSMDVKGLELHDVRIVIPLGTNAAPTIVSVDGSHKHNASSGELVWTIDLIDASNTTG 479          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S2MQW5_9STRA (Coatomer subunit delta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQW5_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.350e-61
Identity = 110/233 (47.21%), Postives = 159/233 (68.24%), Query Frame = 1
Query:    1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVA-ASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAID-GSHRHLTQEGTLLWTMDLLDQSNRT 693
            +GMKLGG+SK + ++D  + ED+L   P ++K +    +A  PA   A  + HPVSL +EE+++  + REG LE ME+KGT++L AN D  +KCKV+LA    +  FT+QTHPKV+K  Y+    L  KD+ KGFP  + +G+LRWS+NT D+S +P++INCWPE E G  MNV++E+     MELH+V+ISIPLG+S  PEI ++D GSH+H      L+W ++L+D  N+T
Sbjct:  241 KGMKLGGSSKKQQIMDKFVSEDNLA--PLSAKGNDTSGKAMTPATAAAPVATHPVSLLLEEKVAVTMNREGALELMEIKGTMALVANGDEFSKCKVILAGAK-NPLFTYQTHPKVDKKAYEKENILCLKDKNKGFPKGK-LGILRWSMNTQDDSQVPISINCWPEDEDGN-MNVNVEFNAEGDMELHNVQISIPLGTSNPPEIVSMDTGSHKHNRTNEVLIWDIELIDGQNKT 468          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A8K1CHB9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHB9_PYTOL)

HSP 1 Score: 201 bits (510), Expect = 2.370e-57
Identity = 111/233 (47.64%), Postives = 149/233 (63.95%), Query Frame = 1
Query:    4 GMKLGGASKS--KNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEIAAIDGSHRHLTQEGTLLWTMDLLDQSNRTG 696
            GMKLGGASKS  K+ LD++  ED L  IP  S      T+   P   V  S  P+ + VEE+++  L REGTLE +EVKG+L ++ N   +  C++ L  +  +G  TFQTHPKV+K ++D    L  KD  K FP AR V VLRWSL T DES +PL I CWPE +GGG++NV++EY + R M L +V I IPLGS   P++A +DG  +H + EG+LLW +D +D SN +G
Sbjct:  318 GMKLGGASKSTGKSFLDAMAAEDDLKEIPPMSAPVQAVTK---PEPTVTVSHDPIGVVVEEKITVVLNREGTLEQLEVKGSLFVSVNDQASACCRLKLRQSAANG-ITFQTHPKVDKRLFDQESVLGLKDATKPFPSAR-VAVLRWSLKTQDESFLPLNIVCWPEEQGGGKINVTIEYSMDRDMVLDNVNILIPLGSRESPQVAHVDGQFQHNSNEGSLLWHLDRVDSSNNSG 545          
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Match: A0A7S2RJQ4_9STRA (Coatomer subunit delta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJQ4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.080e-56
Identity = 103/238 (43.28%), Postives = 158/238 (66.39%), Query Frame = 1
Query:    1 QGMKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTE-----AAVPAAVVAASVHPVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDPSGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDESHMPLTINCWPEPEGGGQMNVSMEYELVRP-MELHDVRISIPLGSSAVPEIAAID-GSHRHLTQEGTLLWTMDLLDQSNRT 693
            +GM+LGG SK + ++D L+ ED+L  +PSA+  +           A PA  V    HP+++ +EE+++  L REG +ES+E KGT+ LT+N+  A +C+V++     +  F +QT+PKV+K  Y+    +A KD +KGFP  + VGVLRWS  T D+ H+P++INCWPE E G  MNV++EY + RP +ELH+V I IPLG+SA P + ++D G+HRH      L+W ++L+D+SN++
Sbjct:  266 KGMQLGGGSKKQQLMDKLVTEDNLTPLPSAASTAXXXXXXXXXXVATPAVEV---THPINILLEEKITGALNREGAVESLETKGTMFLTSNTAEACRCQVIMTPAK-NPLFAYQTNPKVDKKAYEQEHRIALKDASKGFPQGKGVGVLRWSAATQDDEHVPISINCWPE-EDGADMNVNVEYSVDRPGLELHNVSIVIPLGTSASPNVLSVDSGTHRHNRSSEELVWEIELIDESNKS 498          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16912.4941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G727_ECTSI2.940e-15599.14Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835ZBZ4_9STRA2.420e-7555.97Coatomer subunit delta n=1 Tax=Tribonema minus Tax... [more]
A0A4D9DAV0_9STRA1.170e-6650.21Coatomer subunit delta n=1 Tax=Nannochloropsis sal... [more]
F0YG49_AURAN2.070e-6349.14Coatomer subunit delta n=1 Tax=Aureococcus anophag... [more]
A0A7S2HPZ3_9STRA2.360e-6347.21Coatomer subunit delta n=1 Tax=Dictyocha speculum ... [more]
A0A024GKI5_9STRA2.500e-6250.43Coatomer subunit delta n=3 Tax=Albugo candida TaxI... [more]
A0A7S3H6H8_9STRA3.770e-6248.94Coatomer subunit delta n=1 Tax=Spumella elongata T... [more]
A0A7S2MQW5_9STRA2.350e-6147.21Coatomer subunit delta n=1 Tax=Dictyocha speculum ... [more]
A0A8K1CHB9_PYTOL2.370e-5747.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2RJQ4_9STRA1.080e-5643.28Coatomer subunit delta n=1 Tax=Rhizochromulina mar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16912contigEcto-sp13_S_contig16912:503..3803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score448.7
Seed ortholog evalue1.6e-123
Seed eggNOG ortholog2880.D7G727
Model size696
KEGG koko:K20471
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0097708
Exons5
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG2635@1,KOG2635@2759
Cds size690
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16912.4941.1prot_Ecto-sp13_S_contig16912.4941.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16912 509..3803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.442171-UTR-Ecto-sp13_S_contig16912:502..5081681462886.442171-UTR-Ecto-sp13_S_contig16912:502..508Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16912 503..508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.451249-CDS-Ecto-sp13_S_contig16912:508..6971681462886.451249-CDS-Ecto-sp13_S_contig16912:508..697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16912 509..697 +
1681462886.4589896-CDS-Ecto-sp13_S_contig16912:1290..14341681462886.4589896-CDS-Ecto-sp13_S_contig16912:1290..1434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16912 1291..1434 +
1681462886.4669685-CDS-Ecto-sp13_S_contig16912:2392..24701681462886.4669685-CDS-Ecto-sp13_S_contig16912:2392..2470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16912 2393..2470 +
1681462886.4749396-CDS-Ecto-sp13_S_contig16912:2942..30621681462886.4749396-CDS-Ecto-sp13_S_contig16912:2942..3062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16912 2943..3062 +
1681462886.4828637-CDS-Ecto-sp13_S_contig16912:3644..38031681462886.4828637-CDS-Ecto-sp13_S_contig16912:3644..3803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16912 3645..3803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16912.4941.1

>prot_Ecto-sp13_S_contig16912.4941.1 ID=prot_Ecto-sp13_S_contig16912.4941.1|Name=mRNA_Ecto-sp13_S_contig16912.4941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
MKLGGASKSKNMLDSLIKEDHLVSIPSASKASAGGTEAAVPAAVVAASVH
PVSLSVEERLSCQLTREGTLESMEVKGTLSLTANSDGANKCKVVLASTDP
SGAFTFQTHPKVNKGMYDSAKTLASKDQAKGFPVARPVGVLRWSLNTTDE
SHMPLTINCWPEPEGGGQMNVSMEYELVRPMELHDVRISIPLGSSAVPEI
AAIDGSHRHLTQEGTLLWTMDLLDQSNRTG
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mRNA from alignment at Ecto-sp13_S_contig16912:503..3803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16912.4941.1 ID=mRNA_Ecto-sp13_S_contig16912.4941.1|Name=mRNA_Ecto-sp13_S_contig16912.4941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3301bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16912:503..3803+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGAATGAAGCTGGGAGGGGCGTCGAAAAGCAAGAACATGCTGGACTC GCTCATCAAGGAGGACCACCTGGTGTCCATCCCGTCCGCGAGCAAGGCCT CGGCGGGTGGGACAGAGGCAGCCGTCCCTGCAGCCGTCGTTGCCGCCTCC GTGCACCCGGTCTCGCTCAGCGTAGAAGAGCGTCTTAGCTGCCAGGTACA GACACTTCATCCGTGTTGGTTGGCGGAAGGAACATGGGGAATGGGGTACC TTATTTTTGTTTTTGCAACGGGGCCGCTCCAGTTCTCCGGTTACGCTTGG CGTGGAGAACTCCTCATCGCGCAGGTCCAGGCTCTTTGCTTGTATTGGTG CACGTTTGCGAGCTCATGTCTTGGTACATCTTGTGTAGTGGTAAATATCT CCGTACATTGTAGGTATTCCGCAGCGGTGTCGTTTTTTCACAAAGCGCGT CGTTGTTGACCCCCCCCCGCATGCGTGTATGCGGCGTTCGACACCTTGCC TTGCAAGAGGAGATTCGGCCCGTGCGGGACCCTGTTTTCTCGTTTGGATG CTTTTTTCACGTCAAATCTTATCACGTGGCCGATAAATCAATGCACAGGG ACACCTGAACCCAGGAACTTGATCGCCATCTCCCACAGGAACGCTTGTTT GCCAACCACCAAGTACAATTTCGAGGATTGCACCACGGACCCCCCCCCCT CCCTTGCCACTAGAATATTTGTGTTCACCCCCCGTTCCCCCCTGTTGCCA ACAAACCGCTCCTCCTTCGTCTGGGACACACGACGTAGCTTACCCGGGAG GGCACCCTGGAGAGCATGGAGGTGAAGGGAACCCTGAGCCTGACGGCCAA CAGCGACGGAGCGAACAAGTGCAAGGTGGTGCTGGCATCCACCGATCCTT CGGGGGCCTTCACCTTCCAAACGCACCCCAAGGTTTGTATATCGGGTGCA TGATGATGTCCGTTGCCGCTGTTGCGATTTTGGCGCCCCCCTGTGTCTGG TTGTGATATAGGTATGCACTACAGTTGATGCTGTCGTCTTCCCACGAACT GGTGTAGGCGTTCGTGCAAAGCTTGTGGGCGCGATATTAAATATTGCGTT TTGTTGTTGTGACGACGACGAGTGTTTCCGATTGCAGACGTCGCGTCGGT GTAGAGACCATCGAACGAAACCTACATGGAGCAAAACATGACGGCAAAAA TGCGGCGGGCATTACTCATCAGACTCAATTTTAAGCCAAGTGCATATCCA TGAAGCTTCCCTCAATCCTATCTCCTTAAAAGACTTGACCACGACCCCTC TGAGAGTTGTAAAGGAGCGGGTAGTCAACCTGTGGTTTCACCCCTCCGTT TGAAAACCATTAGGTGAGTCATTGCCTTTTGAGAGAGATCTTTGGGGGCC ACCTGGACAGGTTCCGCTAGGTGTGTTTTCTTTGTTCGTCTGAAAGGGAG GAACGTTCTGCTGTAGTGCGTCATCAGCGAGCTCGCGTTTTCGCGCTTTG CTCTACCGATGTACCATATTCTACCCTTTTTTACAAAGAACTTTGTATGT CCTACCTTTTGTGCCCGCGGTCTTAGTAAGTGCTTGGTCTTCACCCACGG CCATTGGTGCAAGCCACGCTCCGTCTGGTGTGCTTAAATTATGAACGCTG ACTACCTTCGTGGGTGAAGTGAACGGTTTAGCGTCCTGCTGAAGGAGTGG GTAGATGTCCGCGTTACTTTTCACTTGCAAAAGTTCTAACAGAGGCCTTG CACTGTTGCAGCTTCCGGTGTCACTCGCCGTCGGCGCTTATCCCAAACAC GCGAAATAATACCACAAGAGCTACACCAGCGAAGTTCACAGCCGTTATTC TTATGATTTCTACGACGTCTTTCTTGGTTGCTTCTTCCAGGTGAACAAGG GCATGTACGACTCCGCCAAGACTCTGGCGTCGAAGGACCAGGCCAAGGGG TTCCCAGTGGCTCGACCTGTGAGTAACAGAGGAAGGAAGGAAGAGCGGTT TTCCGCTCTCTTCGTTGCCGTTTTTGTCTTTTTTTTCGCACATTCCATCT GCTTTATACGCTGGTCCACTGCTACAGCAGTCGGTTTTCTCGAGCTCTCA AACTGGAAACCCCAGATGACGCACAAGACTTCTCTACTTGTGCCCCCTCC ACCTCCCTTCTCCGGCGCATGCCGTTAAAATCGTCACTCGCCCTACAACG GATCTGCCTGACCTTTGCAGCGCCGCAGTTTTTCCTGGCGTGCGCAGGGG TACAACCTCAAAGTTTGTGTCATGCCGGCCGTCCCTTGTGATGATTTGAA AGTTCACATTTTTGCGTCAATTTTCATGAGGCCACCGAGTTTTTGTGTGT GCTACAGTATCATACGAGCTTGGTCTTTTGTTGCTGACTGTCCTCGTGTG CGTGTCGGCTCGCTCCGGTACGGACGGACGGTGCAAACAGGTCGGCGTGC TTCGCTGGAGCCTCAACACCACGGACGAGTCGCATATGCCGCTCACGATC AACTGCTGGCCGGAACCAGAGGGCGGGGGGCAGATGAACGTCAGCATGGA GTACGAGCTGGTGGGTTGTGGTGGTGGTCACAGTCCGGTGCCCTCTCGCG TAGCACGAGTGGGACTGCTGTTGTGTGGCGAAGGCATGGCTCGGTTTTGC TTGCACGACCATGAGTCGGGCAGCGTTCCCCCCCGCACTTTTTGTTTCGT TGCGGCTCGTCGCGGACGAACATCGTCGACCGCTGAAAGAACCCCACGGG TGTTTTGTACCGGTGTGTTATTTTTCCCTGCTGGGCACTGCCTGTCATGC AGGACGGTGGTGGTTTATTGTTTCGCCACACTGGGCAAGTAGCGCACAAC AAGAACACCCCCTCCCCCCCCCTCATTTTTGGGGCACCTATGAAGGCACG GTAGGCCATCGGTGAAAATAGTGCTCCGTCCTCTCGAGGACAAATGATCT AACAACTAGAGGTATGCAACACATAAGGGTACCGCCCCCCCTCCTGTTCC AAGAAGAAGGGACGATTGGCCATCGGTGGTCGGCACTGTGGAAACAATGC TTTACCTCTCGAGGACGCGTGGTCAATGGTCTAAACGCTAAGGCATGTAA ACATCAGAGTACCCCCCCCTGTTCGAACACGCCTCTTTTCAGGTTCGACC GATGGAGCTCCACGACGTGCGCATCAGCATCCCACTCGGCTCCTCCGCCG TTCCGGAGATCGCCGCGATCGACGGCTCTCACCGCCACCTGACGCAGGAG GGAACGCTTTTGTGGACGATGGACCTGTTGGACCAGTCCAACCGCACCGG G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16912:503..3803+

>mRNA_Ecto-sp13_S_contig16912.4941.1 ID=mRNA_Ecto-sp13_S_contig16912.4941.1|Name=mRNA_Ecto-sp13_S_contig16912.4941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16912:503..3803+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTGGGAGGGGCGTCGAAAAGCAAGAACATGCTGGACTCGCTCAT
CAAGGAGGACCACCTGGTGTCCATCCCGTCCGCGAGCAAGGCCTCGGCGG
GTGGGACAGAGGCAGCCGTCCCTGCAGCCGTCGTTGCCGCCTCCGTGCAC
CCGGTCTCGCTCAGCGTAGAAGAGCGTCTTAGCTGCCAGCTTACCCGGGA
GGGCACCCTGGAGAGCATGGAGGTGAAGGGAACCCTGAGCCTGACGGCCA
ACAGCGACGGAGCGAACAAGTGCAAGGTGGTGCTGGCATCCACCGATCCT
TCGGGGGCCTTCACCTTCCAAACGCACCCCAAGGTGAACAAGGGCATGTA
CGACTCCGCCAAGACTCTGGCGTCGAAGGACCAGGCCAAGGGGTTCCCAG
TGGCTCGACCTGTCGGCGTGCTTCGCTGGAGCCTCAACACCACGGACGAG
TCGCATATGCCGCTCACGATCAACTGCTGGCCGGAACCAGAGGGCGGGGG
GCAGATGAACGTCAGCATGGAGTACGAGCTGGTTCGACCGATGGAGCTCC
ACGACGTGCGCATCAGCATCCCACTCGGCTCCTCCGCCGTTCCGGAGATC
GCCGCGATCGACGGCTCTCACCGCCACCTGACGCAGGAGGGAACGCTTTT
GTGGACGATGGACCTGTTGGACCAGTCCAACCGCACCGGG
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