mRNA_Ecto-sp13_S_contig169.4931.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: D7FNU5_ECTSI (Elongin-C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNU5_ECTSI) HSP 1 Score: 191 bits (486), Expect = 9.140e-62 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1
Query: 1 QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC
Sbjct: 6 QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 100
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: A0A6U1KLA4_9STRA (Elongin-C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KLA4_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.500e-40 Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 1
Query: 4 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
++VKL+SAEG EF+VDR+CA SGTIKAMLSG F E+ SG++ F EISTPILEKVIQ+ YYK Y NS RIPEF IEPE+ALELLMAANFLDC
Sbjct: 26 QYVKLISAEGHEFFVDRQCAQTSGTIKAMLSGSFTES-SGEIKFPEISTPILEKVIQYFYYKASYKNSQVRIPEFAIEPEVALELLMAANFLDC 118
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: A0A1V9Z8H2_9STRA (Elongin-C n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z8H2_9STRA) HSP 1 Score: 137 bits (344), Expect = 4.270e-40 Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1
Query: 4 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
E+VKL+SAEG EF+V RKCA+VSGTIKAMLSG F E+ G+V F +IS PILEKVIQ++YYK RY+NS RIP+F IEPE+ALELLMAAN+LDC
Sbjct: 9 EYVKLISAEGHEFFVARKCALVSGTIKAMLSGHFSES-KGEVRFPDISAPILEKVIQYMYYKKRYSNSNARIPDFGIEPEMALELLMAANYLDC 101
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: A0A6G0WB49_9STRA (Elongin-C n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WB49_9STRA) HSP 1 Score: 135 bits (340), Expect = 1.850e-39 Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 1
Query: 4 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
++VKL+SAEG EF+V RKCAMVSGTIKAML+G F E+ G+V F +IS PILEK+IQ+ Y+KVRY+NS R+P+F IEPE+ALELLMAAN+LDC
Sbjct: 11 DYVKLISAEGQEFYVARKCAMVSGTIKAMLTGHFSES-KGEVRFPDISAPILEKIIQYFYFKVRYSNSNARLPDFTIEPEIALELLMAANYLDC 103
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: A0A7S2XYA0_9STRA (Elongin-C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA0_9STRA) HSP 1 Score: 135 bits (339), Expect = 2.780e-39 Identity = 68/92 (73.91%), Postives = 79/92 (85.87%), Query Frame = 1
Query: 10 VKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
VKLVS+EG EF+ DR+CAMVSGTI AMLSG F E+ G+V F EIS+ ILEK+IQ+ YYKVRYTNS +RIP+F IEPE+ALELLMAANFLDC
Sbjct: 15 VKLVSSEGHEFYCDRRCAMVSGTINAMLSGQFAESR-GEVTFPEISSAILEKIIQYCYYKVRYTNSTSRIPDFPIEPEIALELLMAANFLDC 105
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: A0A1W0A8X8_9STRA (Elongin-C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8X8_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.950e-39 Identity = 66/94 (70.21%), Postives = 81/94 (86.17%), Query Frame = 1
Query: 4 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
E+VKLVSAEG EF+V RKCA+VSGTIKAML G F E+ G++ F +IS PILEKVIQ++YYK RY+NS RIPEF+IEPE++LELLMAAN+L+C
Sbjct: 13 EYVKLVSAEGHEFYVARKCALVSGTIKAMLLGQFSES-KGEIRFPDISAPILEKVIQYLYYKKRYSNSNARIPEFNIEPEMSLELLMAANYLEC 105
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: L8GYQ9_ACACA (Elongin-C n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYQ9_ACACA) HSP 1 Score: 134 bits (337), Expect = 5.290e-39 Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 10 VKLVSAEGAEFWVDRKCAMVSGTIKAMLSGG--FGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLD 282
VKL+SA+G EF VDRK AMVSGTIK+MLSG F E A G+++F EISTPILEKVIQ+ YYK+RYTNS T IPEF IEPE+ALELLMAANFLD
Sbjct: 10 VKLISADGHEFVVDRKAAMVSGTIKSMLSGPGTFTEQAMGEINFREISTPILEKVIQYFYYKLRYTNSTTEIPEFPIEPEVALELLMAANFLD 102
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: F0YER3_AURAN (Elongin-C (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER3_AURAN) HSP 1 Score: 133 bits (335), Expect = 7.670e-39 Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 1
Query: 22 SAEGAEFWVDRKCAMVSGTIKAMLSGGFGEA----ASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
SAEG EFWVDRKCA SGTIKAMLSG G +SG++ F EISTPILEKVIQ+ YYK+RYTNS RIPEF I+PE+ALELLMA+NFLDC
Sbjct: 1 SAEGHEFWVDRKCANTSGTIKAMLSGPRGPRQFTESSGEIKFPEISTPILEKVIQYFYYKLRYTNSQVRIPEFQIDPEMALELLMASNFLDC 92
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: K8Z122_NANGC (Elongin-C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z122_NANGC) HSP 1 Score: 133 bits (334), Expect = 1.340e-38 Identity = 65/94 (69.15%), Postives = 81/94 (86.17%), Query Frame = 1
Query: 4 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
++VKL+SAEG EF VDRKCA VS TI+AML+G F E+ G+++F EIST ILEKVIQ++YYKVRYTNS ++P+F +EPE+ALELLMAANFLDC
Sbjct: 7 KYVKLISAEGHEFIVDRKCACVSKTIEAMLAGNFAES-KGEINFPEISTNILEKVIQYLYYKVRYTNSPQKVPDFKMEPEIALELLMAANFLDC 99
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Match: A0A485K8T6_9STRA (Elongin-C n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8T6_9STRA) HSP 1 Score: 131 bits (330), Expect = 6.540e-38 Identity = 63/94 (67.02%), Postives = 79/94 (84.04%), Query Frame = 1
Query: 4 EFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTPILEKVIQFVYYKVRYTNSATRIPEFHIEPELALELLMAANFLDC 285
E+VKL+SAEG EF++ RKCAMVSGTIKAML+G F E+ G++ F +I +LEKVIQ++YYK RY+NS RIP+F IEPE+ALELLMAAN+LDC
Sbjct: 13 EYVKLISAEGHEFYIARKCAMVSGTIKAMLTGHFSES-KGEIRFPDIGASVLEKVIQYMYYKKRYSNSNARIPDFAIEPEIALELLMAANYLDC 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig169.4931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig169.4931.1 >prot_Ecto-sp13_S_contig169.4931.1 ID=prot_Ecto-sp13_S_contig169.4931.1|Name=mRNA_Ecto-sp13_S_contig169.4931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp QEFVKLVSAEGAEFWVDRKCAMVSGTIKAMLSGGFGEAASGQVHFAEISTback to top mRNA from alignment at Ecto-sp13_S_contig169:17462..18569+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig169.4931.1 ID=mRNA_Ecto-sp13_S_contig169.4931.1|Name=mRNA_Ecto-sp13_S_contig169.4931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig169:17462..18569+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig169:17462..18569+ >mRNA_Ecto-sp13_S_contig169.4931.1 ID=mRNA_Ecto-sp13_S_contig169.4931.1|Name=mRNA_Ecto-sp13_S_contig169.4931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig169:17462..18569+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |