mRNA_Ecto-sp13_S_contig16895.4927.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig16895.4927.1
Unique Name	mRNA_Ecto-sp13_S_contig16895.4927.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig16895.4927.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.250e-121
Identity = 215/230 (93.48%), Postives = 221/230 (96.09%), Query Frame = 1

Query:    1 QVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGEAPALRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVCPGVSTSRPLGRHAHASAYIESKTDNVNALFIFGGRENMDDLVPLGDLWMFDFTTMRWSEMTPDPKKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREV 690
            +VRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGE+PALRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     KAVCPGVSTSRPLGRHAHASAYIESKTDN+NALFIFGGRENMD+L PLGDLWMFDFTTMRW E+TPD  KPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWR+V
Sbjct:  333 EVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDKK-KAVCPGVSTSRPLGRHAHASAYIESKTDNMNALFIFGGRENMDELTPLGDLWMFDFTTMRWREITPDSNKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWRQV 561

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BLAST of mRNA_Ecto-sp13_S_contig16895.4927.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 3.740e-110
Identity = 166/230 (72.17%), Postives = 170/230 (73.91%), Query Frame = 1

Query:    1 QVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGEAPALRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVCPGVSTSRPLGRHAHASAYIESKTDNVNALFIFGGRENMDDLVPLGDLWMFDFTTMRWSEMTPDPKKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREV 690
            +VRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGE+PALR                                                         H HASAYIESKTDN+NALFIFGGRENMDDL PLGDLWMFDFTTMRWSE+TPD KKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREV
Sbjct:  239 EVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPALR---------------------------------------------------------HGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREV 411

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BLAST of mRNA_Ecto-sp13_S_contig16895.4927.1 vs. uniprot
Match: A0A836CN12_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN12_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.010e-18
Identity = 94/229 (41.05%), Postives = 118/229 (51.53%), Query Frame = 1

Query:    7 RAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGEAPALRPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAVCPGVSTSRPLGRHAHASAYIESKTDNVNALFIFGGRENMDDLVPLGDLWMFDFTTMRWSEMTPDPK-KPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREV 690
            R V +GG     +G     +DL+AYD A + WE + P  DA+         GE   +R                 XXXXXXXXXXXXXXXXXXXXXXXXX           PL R  H + +++     +++LFI GGR        L D+W F+F T RWS+    P  +P P  RF H   VWQGG GDG   LVV GGE I  +G     NDVW+Y+ Q  +WR+V
Sbjct:  254 RLVAYGGRHCGSEGC-QLFSDLWAYDAAADAWERLDPVMDAE---------GETGIVR---------------EEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPREQHGAVFVQE----LDSLFIHGGRWTDQPGPALDDIWSFNFKTRRWSQHWQLPNGRPPP--RFGHGFAVWQGGQGDGSPGLVVIGGEVI-ESGARYLSNDVWMYSIQDRSWRQV 450

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16895.4927.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16895.4927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5KHR5_9PHAE	1.250e-121	93.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G1X6_ECTSI	3.740e-110	72.17	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CN12_9STRA	4.010e-18	41.05	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16895	contig	Ecto-sp13_S_contig16895:1398..3246 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Metazoa
Stop	0
Start	0
Seed ortholog score	66.6
Seed ortholog evalue	1.7e-08
Seed eggNOG ortholog	176946.XP_007430507.1
Preferred name	MEGF8
Model size	690
Hectar predicted targeting category	other localisation
GOs	GO:0001501,GO:0001558,GO:0001568,GO:0001667,GO:0001702,GO:0001944,GO:0002009,GO:0002011,GO:0003002,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0007413,GO:0007507,GO:0008037,GO:0008038,GO:0008150,GO:0008361,GO:0008589,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0016043,GO:0016477,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030154,GO:0030182,GO:0030307,GO:0030326,GO:0030509,GO:0030516,GO:0031175,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032535,GO:0032879,GO:0035050,GO:0035107,GO:0035108,GO:0035113,GO:0035239,GO:0035295,GO:0040008,GO:0040011,GO:0040012,GO:0040017,GO:0042074,GO:0042221,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045773,GO:0045879,GO:0045927,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048565,GO:0048568,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048638,GO:0048639,GO:0048666,GO:0048699,GO:0048704,GO:0048705,GO:0048706,GO:0048729,GO:0048731,GO:0048736,GO:0048841,GO:0048842,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050770,GO:0050772,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050920,GO:0050921,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051239,GO:0051240,GO:0051252,GO:0051270,GO:0051272,GO:0051674,GO:0051716,GO:0051960,GO:0051962,GO:0055113,GO:0055123,GO:0060173,GO:0060255,GO:0060284,GO:0060348,GO:0060349,GO:0060429,GO:0060562,GO:0060971,GO:0060972,GO:0060976,GO:0061371,GO:0061387,GO:0061564,GO:0065007,GO:0065008,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071772,GO:0071773,GO:0071840,GO:0071907,GO:0072358,GO:0072359,GO:0080090,GO:0090066,GO:0090504,GO:0097094,GO:0097155,GO:0106030,GO:0120035,GO:0120036,GO:1902667,GO:1902669,GO:1903506,GO:1904888,GO:2000026,GO:2000112,GO:2001141
Exons	4
EggNOG free text desc.	multiple epidermal growth factor-like domains protein
EggNOG OGs	38EMH@33154,3BDHS@33208,3CRM9@33213,489WW@7711,4907V@7742,KOG1388@1,KOG1388@2759
Cds size	690
COG Functional cat.	T
Best tax level	Vertebrata
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462885.0532682-CDS-Ecto-sp13_S_contig16895:1397..1535	1681462885.0532682-CDS-Ecto-sp13_S_contig16895:1397..1535	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16895 1398..1535 -
1681462885.0634785-CDS-Ecto-sp13_S_contig16895:1893..1984	1681462885.0634785-CDS-Ecto-sp13_S_contig16895:1893..1984	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16895 1894..1984 -
1681462885.0723922-CDS-Ecto-sp13_S_contig16895:2371..2684	1681462885.0723922-CDS-Ecto-sp13_S_contig16895:2371..2684	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16895 2372..2684 -
1681462885.086513-CDS-Ecto-sp13_S_contig16895:3098..3246	1681462885.086513-CDS-Ecto-sp13_S_contig16895:3098..3246	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16895 3099..3246 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16895.4927.1	prot_Ecto-sp13_S_contig16895.4927.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig16895 1398..3246 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig16895:1398..3246-
coding sequence from alignment at Ecto-sp13_S_contig16895:1398..3246-

protein sequence of mRNA_Ecto-sp13_S_contig16895.4927.1

>prot_Ecto-sp13_S_contig16895.4927.1 ID=prot_Ecto-sp13_S_contig16895.4927.1|Name=mRNA_Ecto-sp13_S_contig16895.4927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
QVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEA
DDTGEAPALRPAAATSSSSSSSSPYAAGNSTVGIISSGSRSGGGGGGGGG
KKKAVCPGVSTSRPLGRHAHASAYIESKTDNVNALFIFGGRENMDDLVPL
GDLWMFDFTTMRWSEMTPDPKKPAPCNRFYHSLTVWQGGVGDGVASLVVF
GGETITRTGQTVFMNDVWLYTPQTGAWREV

mRNA from alignment at Ecto-sp13_S_contig16895:1398..3246-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig16895.4927.1 ID=mRNA_Ecto-sp13_S_contig16895.4927.1|Name=mRNA_Ecto-sp13_S_contig16895.4927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16895:1398..3246- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCGCGCGGTTGTGTTCGGAGGGTGCAAACTCGCCCCTGACGGCGT
CTTTTCGTGCTCCAACGATCTATACGCCTACGACCTCGCTACCAACCGGT
GGGAGGAGATCGTTCCCAAGAGCGATGCCGACGCGTTTGCCTGCGAGGGT
GAGTGAGTGGTTTTGGCGTGTGTGACAGAGGAGAGGGGGGGGAGGAAGGG
AGGGAGGAAGGGAGAGGGTGAGGGGCAAGAGAGAGACAAGAAGGGGAGGG
AGAGAGAGAGGACAAACAGACAAGAGAGACAGAGGGAGAGGGAGAGAGGG
AGAGACAGAGACAGAGGCAGACAGACAAAGAGACAGAGAGAGGGAGAGAC
AGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAAGAGAC
AGAGAGAACGAGAGGGAGAGAGAGGGGCTCTCGCGTGTGTTCGATGTTTC
ACCCTCACCCGTTCCTTGTTTCCTTCCACTTGTCGACCCGTTCGGCGTGA
AACTCCTCCTGCCCCCTCTCTCTGCCTACCAACATACCTCCGCGACATCT
CTCTCTCCGCAGCGGACGACACGGGCGAGGCTCCAGCGCTCCGCCCCGCA
GCGGCCACGTCTTCCTCCTCCTCCTCCTCCTCTCCGTACGCTGCCGGCAA
CAGCACCGTCGGCATCATCAGCAGCGGCAGCAGGAGCGGCGGCGGCGGCG
GCGGCGGCGGGGGTAAGAAGAAGGCGGTGTGCCCGGGGGTGTCGACCTCG
CGTCCCCTGGGCAGACACGCCCACGCGTCGGCGTACATCGAGTCGAAGAC
GGACAACGTGAACGCGCTGTTCATCTTCGGGGGAAGGGAGAACATGGACG
ACCTAGTCCCGCTCGGGGACCTTTGGTGAGTACGGCCGGCAGTCGTCGAC
TTGTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGTTGCTGT
GGCACGCTACAAACGGTAGCCCTGCTGCTTTTTTGTGCCTCTCGACTGTG
TTGTAGTTGGTCGTCAGAGCTGTTGGGAGACGTGTTGAGTAGTCGTTGGC
TGGTGTGCAGGCAGCTGTGACGCACTAGTGCTACCGTTGTTTGCCTCTCG
GTTTGGTGTCTTCGGTTTTCAGCTCTCCTTTGCGGGAATGTTAGTGTTTC
GTCGTTGGTAGTGTATTTTTCAACTGCAGTCGGCGTAGTTTTGTCTTCGA
AGCTCTCTTATATAGGACGCGTGCTGCCCCCCCCCCCGTCCCCCCCTCTA
CTCGCGTCTCAGGATGTTCGACTTTACGACGATGAGATGGAGCGAGATGA
CCCCGGACCCCAAAAAACCTGCTCCTTGCAACCGCTTCTACCACTCCCTC
ACGGTAAGCGTCATACCTGTCTTTCGTGGTTGCTGCCGGAAACGTGTTTT
TTTGTTCTTTTTTTTTCAGGTATGGCAAAGTGGTGTGGGTGACTGCATGG
ATGGATGAATGTGCTTGTGTTGTGTCCGTTGTTTTATATGTTGTTCTTCT
CCTTCTCTTTTTTTATTCAGGTATGGTGAAAGTATTGTGGGGAACTGCGT
GGATGGATACAAGCTTTTTCGTGTGCGTTATTTTCAGCTTTTTGTCTTTC
TTCTCTGTTTCAGGTGTGGCGGAGTCTCGTGGGCGACTGCACGGATGCAT
GTGCTCTCGCGTGCGTTGTTTACGAAGAGTAAAAACGTTTTCTTTTTCTT
TTTTCTTCCAGGTATGGCAAGGCGGTGTGGGCGACGGCGTGGCCTCCCTG
GTAGTGTTCGGAGGCGAGACCATCACCAGGACGGGTCAGACGGTCTTCAT
GAACGATGTCTGGCTCTACACGCCGCAAACGGGGGCGTGGCGCGAGGTC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16895:1398..3246-

>mRNA_Ecto-sp13_S_contig16895.4927.1 ID=mRNA_Ecto-sp13_S_contig16895.4927.1|Name=mRNA_Ecto-sp13_S_contig16895.4927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16895:1398..3246- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGCGCGCGGTTGTGTTCGGAGGGTGCAAACTCGCCCCTGACGGCGT
CTTTTCGTGCTCCAACGATCTATACGCCTACGACCTCGCTACCAACCGGT
GGGAGGAGATCGTTCCCAAGAGCGATGCCGACGCGTTTGCCTGCGAGGCG
GACGACACGGGCGAGGCTCCAGCGCTCCGCCCCGCAGCGGCCACGTCTTC
CTCCTCCTCCTCCTCCTCTCCGTACGCTGCCGGCAACAGCACCGTCGGCA
TCATCAGCAGCGGCAGCAGGAGCGGCGGCGGCGGCGGCGGCGGCGGGGGT
AAGAAGAAGGCGGTGTGCCCGGGGGTGTCGACCTCGCGTCCCCTGGGCAG
ACACGCCCACGCGTCGGCGTACATCGAGTCGAAGACGGACAACGTGAACG
CGCTGTTCATCTTCGGGGGAAGGGAGAACATGGACGACCTAGTCCCGCTC
GGGGACCTTTGGATGTTCGACTTTACGACGATGAGATGGAGCGAGATGAC
CCCGGACCCCAAAAAACCTGCTCCTTGCAACCGCTTCTACCACTCCCTCA
CGGTATGGCAAGGCGGTGTGGGCGACGGCGTGGCCTCCCTGGTAGTGTTC
GGAGGCGAGACCATCACCAGGACGGGTCAGACGGTCTTCATGAACGATGT
CTGGCTCTACACGCCGCAAACGGGGGCGTGGCGCGAGGTC