mRNA_Ecto-sp13_S_contig1689.4922.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1689.4922.1
Unique NamemRNA_Ecto-sp13_S_contig1689.4922.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1689.4922.1 vs. uniprot
Match: D8LMK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK4_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 4.300e-38
Identity = 104/140 (74.29%), Postives = 108/140 (77.14%), Query Frame = 1 
Query:  487 ESMAPIFPAHELVQAPSSPPSTQAPPTRSMRFRSSSRLAGGRGSDALSSRTXXXXXXXSRSDHRASRRTARTRKGSFSSSRRAGSVSSRTRSKARTAVTSKVTCAARANVQSGRTVLGGSTAR-ATRFNVRAGKVRLCTD 903
            ESM  I PAH+ VQ P SPP  Q PPTRSMR RSSS L  GRGSDALSS T  XXXXXSR+DH ASRR  RT KGS SSSR AGSVSSRTRSKARTA TS+V C+ARA VQSGRTVLGGSTAR  TR NVRAGKV    D
Sbjct:  159 ESMMSIIPAHQPVQTPPSPPIIQPPPTRSMRLRSSSCLVEGRGSDALSS-TTTXXXXXSRNDHLASRRQDRTPKGSCSSSRSAGSVSSRTRSKARTAATSRVMCSARATVQSGRTVLGGSTARRVTRSNVRAGKVLWTVD 297
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1689.4922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMK4_ECTSI4.300e-3874.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1689contigEcto-sp13_S_contig1689:7400..8807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size915
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003070.1
Cds size915
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462884.729164-CDS-Ecto-sp13_S_contig1689:7399..77071681462884.729164-CDS-Ecto-sp13_S_contig1689:7399..7707Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1689 7400..7707 -
1681462884.738856-CDS-Ecto-sp13_S_contig1689:8155..83661681462884.738856-CDS-Ecto-sp13_S_contig1689:8155..8366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1689 8156..8366 -
1681462884.748082-CDS-Ecto-sp13_S_contig1689:8411..88071681462884.748082-CDS-Ecto-sp13_S_contig1689:8411..8807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1689 8412..8807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1689.4922.1prot_Ecto-sp13_S_contig1689.4922.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1689 7400..8807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1689.4922.1

>prot_Ecto-sp13_S_contig1689.4922.1 ID=prot_Ecto-sp13_S_contig1689.4922.1|Name=mRNA_Ecto-sp13_S_contig1689.4922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
LLAPPRRREVTWADPLEQVREIPARGPSVTWADPLEQVREIPARGPNVTW
ADPLEQVREIPARGPIVTWADPLEQVREIPARGPNVTWADPLEQVREIPA
RGPNVTWADPLEQVHEIPARGPNVTWADPLEQPLVEVREIPARGPVVTWA
PPVVEVREIPASESMAPIFPAHELVQAPSSPPSTQAPPTRSMRFRSSSRL
AGGRGSDALSSRTTTTTTTTSRSDHRASRRTARTRKGSFSSSRRAGSVSS
RTRSKARTAVTSKVTCAARANVQSGRTVLGGSTARATRFNVRAGKVRLCT
DTIR*
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mRNA from alignment at Ecto-sp13_S_contig1689:7400..8807-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1689.4922.1 ID=mRNA_Ecto-sp13_S_contig1689.4922.1|Name=mRNA_Ecto-sp13_S_contig1689.4922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1689:7400..8807- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCTTGCTCCTCCCCGGCGCAGGGAGGTGACCTGGGCCGATCCGCTTGA
GCAGGTCCGCGAGATTCCGGCTCGTGGGCCCAGCGTTACCTGGGCCGATC
CGCTTGAGCAGGTCCGCGAGATTCCGGCTCGTGGGCCCAACGTTACCTGG
GCCGATCCGCTTGAGCAGGTCCGCGAGATTCCAGCTCGTGGGCCCATCGT
TACCTGGGCCGATCCGCTTGAGCAGGTCCGCGAGATTCCGGCTCGTGGGC
CCAACGTAACCTGGGCCGATCCGCTTGAGCAGGTCCGCGAGATTCCGGCT
CGTGGGCCCAACGTAACCTGGGCCGATCCGCTTGAGCAGGTCCACGAGAT
TCCGGCTCGTGGGCCCAACGTAACCTGGGCCGATCCGCTTGAGCAGGTCC
ACGAGATGCCGGCTCGTGAGTCTACGGTGACCTGGGCCCAGCCTCTAGTC
GAAGTCCGCGAGATTCCGGCTCGTGGGCCCGTCGTGACCTGGGCCCCGCC
TGTAGTCGAGGTCCGCGAGATTCCGGCTAGTGAGTCCATGGCGCCCATCT
TTCCGGCTCACGAGCTTGTCCAGGCACCGTCTTCCCCGCCTTCTACCCAG
GCGCCGCCGACTCGGTCGATGCGCTTCCGTTCTTCATCTCGCTTGGCGGG
AGGTGAGAAGCCAGCTGCCTCCGAGTCTTTTGGCATCCATGATTTGATAA
AGTGCATTGGACGCGCTACTGCTGTCCTTCGTTGTAGCTCTGTCGTTGAT
GATTGCAGACAGATGCGCTCACGAGTCCGATCGCGGGTCAGCCTCCCCAT
AAACGGCCGACATATGCACGCAGAATTTCAATGTCCTAACGCTTGATTCG
GAAACCGCGGTACACTAGGCTATGGATGTAGATTTCATGATGAAAATATC
ACCAACGGCCGTCGGTACGCATATTTCAGCGTATTTTCGGCGCTCCCCGC
CATCTTCATGGACCCCACGGGATCCACTCTGCCCTTGACAAATTCAAAAC
GTGCCGGGAATTTCCGCCCATACGGTATCTCTTTGATTTTTGAATATGCT
AATAGCGGCGGATGTTCCTGTTTCTGTTATCGCTGACTTGTGTTCCGTAG
GCCGCGGCAGTGACGCTCTGTCCAGCAGGACCACCACCACCACCACTACC
ACCAGCAGGAGCGATCACCGTGCATCGCGGCGGACGGCTCGCACTCGAAA
GGGTAGCTTTAGCAGTAGCCGTAGAGCGGGCAGTGTATCATCTCGCACGC
GAAGTAAGGCACGCACTGCGGTGACGAGCAAGGTGACGTGTGCTGCTAGA
GCCAACGTGCAATCAGGTAGGACGGTGCTTGGCGGTAGCACCGCAAGAGC
GACTAGGTTCAATGTGCGAGCCGGCAAGGTGAGACTGTGCACGGACACCA
TCCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1689:7400..8807-

>mRNA_Ecto-sp13_S_contig1689.4922.1 ID=mRNA_Ecto-sp13_S_contig1689.4922.1|Name=mRNA_Ecto-sp13_S_contig1689.4922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1689:7400..8807- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCTTGCTCCTCCCCGGCGCAGGGAGGTGACCTGGGCCGATCCGCTTGA
GCAGGTCCGCGAGATTCCGGCTCGTGGGCCCAGCGTTACCTGGGCCGATC
CGCTTGAGCAGGTCCGCGAGATTCCGGCTCGTGGGCCCAACGTTACCTGG
GCCGATCCGCTTGAGCAGGTCCGCGAGATTCCAGCTCGTGGGCCCATCGT
TACCTGGGCCGATCCGCTTGAGCAGGTCCGCGAGATTCCGGCTCGTGGGC
CCAACGTAACCTGGGCCGATCCGCTTGAGCAGGTCCGCGAGATTCCGGCT
CGTGGGCCCAACGTAACCTGGGCCGATCCGCTTGAGCAGGTCCACGAGAT
TCCGGCTCGTGGGCCCAACGTAACCTGGGCCGATCCGCTTGAGCAGCCTC
TAGTCGAAGTCCGCGAGATTCCGGCTCGTGGGCCCGTCGTGACCTGGGCC
CCGCCTGTAGTCGAGGTCCGCGAGATTCCGGCTAGTGAGTCCATGGCGCC
CATCTTTCCGGCTCACGAGCTTGTCCAGGCACCGTCTTCCCCGCCTTCTA
CCCAGGCGCCGCCGACTCGGTCGATGCGCTTCCGTTCTTCATCTCGCTTG
GCGGGAGGCCGCGGCAGTGACGCTCTGTCCAGCAGGACCACCACCACCAC
CACTACCACCAGCAGGAGCGATCACCGTGCATCGCGGCGGACGGCTCGCA
CTCGAAAGGGTAGCTTTAGCAGTAGCCGTAGAGCGGGCAGTGTATCATCT
CGCACGCGAAGTAAGGCACGCACTGCGGTGACGAGCAAGGTGACGTGTGC
TGCTAGAGCCAACGTGCAATCAGGTAGGACGGTGCTTGGCGGTAGCACCG
CAAGAGCGACTAGGTTCAATGTGCGAGCCGGCAAGGTGAGACTGTGCACG
GACACCATCCGATAG
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