mRNA_Ecto-sp13_S_contig16884.4919.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16884.4919.1
Unique NamemRNA_Ecto-sp13_S_contig16884.4919.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.450e-35
Identity = 73/111 (65.77%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQ                                     ALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV
Sbjct:  261 ETFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQ-------------------------------------ALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 334
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A8K1C4Y7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Y7_PYTOL)

HSP 1 Score: 101 bits (252), Expect = 8.820e-23
Identity = 56/111 (50.45%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFR+H++RF A A +CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEFYAM DFTNP +
Sbjct:  320 ETFRMHAQRF-ADAPSCCDLLICDEAHRLKNANSQINR-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFYAMVDFTNPNI 392
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: W7TPR5_9STRA (Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPR5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.220e-22
Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFR H+K F A    CCD+LICDEAHRLKNA+TATNQ                                     AL+ L CR+RVLLSGTP+QNDL EFYAM DFTNPG+
Sbjct:  328 ETFRGHAKSFPAGCAGCCDVLICDEAHRLKNAETATNQ-------------------------------------ALAKLHCRRRVLLSGTPLQNDLNEFYAMVDFTNPGI 401
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.370e-22
Identity = 56/111 (50.45%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:    1 QTFRLHSKRFY-AKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPG 330
            +TFR+H+ RF  A A+T CDLL+CDEAHRLKN DTAT++                                     AL+ LKCR+RVLLSGTPMQNDLEEFYAM DF NPG
Sbjct:  106 ETFRMHAARFGGAHANTSCDLLVCDEAHRLKNGDTATSK-------------------------------------ALAGLKCRRRVLLSGTPMQNDLEEFYAMVDFANPG 179
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A388K9Y3_CHABU (Uncharacterized protein n=2 Tax=Streptophytina TaxID=131221 RepID=A0A388K9Y3_CHABU)

HSP 1 Score: 99.0 bits (245), Expect = 7.880e-22
Identity = 55/111 (49.55%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFRLH K+F+ +++  CDLLICDEAHRLKN  T TNQ                                     AL+A+ CR+RVLLSGTPMQNDLEEF+AM DFTNPGV
Sbjct:  495 ETFRLHCKKFH-ESERSCDLLICDEAHRLKNDKTLTNQ-------------------------------------ALAAMPCRRRVLLSGTPMQNDLEEFFAMVDFTNPGV 567
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A5J5BWB8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BWB8_9ASTE)

HSP 1 Score: 98.6 bits (244), Expect = 1.040e-21
Identity = 53/111 (47.75%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFR+HS +F    D CCDLLICDEAHRLKN  T TN+                                     AL+AL C++R+LLSGTPMQNDLEEFYAM +FTNPG+
Sbjct:  314 ETFRMHSSKF--SQDGCCDLLICDEAHRLKNDQTLTNR-------------------------------------ALAALSCKRRILLSGTPMQNDLEEFYAMVNFTNPGI 385
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A6A3YSV7_9STRA (Protein CHROMATIN REMODELING 25 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YSV7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.440e-21
Identity = 54/111 (48.65%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFR+H+++F A A  CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  308 ETFRMHAQKF-ADAPECCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPNI 380
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A225X0F1_9STRA (DNA repair and recombination protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0F1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-21
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFR+H+++F A    CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  284 ETFRMHAQKF-ADTPACCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPNI 356
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BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A0P1AJX3_PLAHL (Dna repair and recombination protein rad54-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJX3_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-21
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFR+H+++F A    CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  306 ETFRMHAQKF-ADTPACCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPSI 378
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: D0MQ92_PHYIT (DNA repair and recombination protein RAD54 n=13 Tax=Phytophthora TaxID=4783 RepID=D0MQ92_PHYIT)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-21
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 333
            +TFR+H+++F A    CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  307 ETFRMHAQKF-ADTPACCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPNI 379
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSB9_9PHAE6.450e-3565.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1C4Y7_PYTOL8.820e-2350.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7TPR5_9STRA1.220e-2249.55Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A836CHF7_9STRA1.370e-2250.45SNF2 family N-terminal domain-containing protein n... [more]
A0A388K9Y3_CHABU7.880e-2249.55Uncharacterized protein n=2 Tax=Streptophytina Tax... [more]
A0A5J5BWB8_9ASTE1.040e-2147.75Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A6A3YSV7_9STRA1.440e-2148.65Protein CHROMATIN REMODELING 25 n=5 Tax=Phytophtho... [more]
A0A225X0F1_9STRA3.660e-2147.75DNA repair and recombination protein n=1 Tax=Phyto... [more]
A0A0P1AJX3_PLAHL3.660e-2147.75Dna repair and recombination protein rad54-like n=... [more]
D0MQ92_PHYIT3.660e-2147.75DNA repair and recombination protein RAD54 n=13 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16884contigEcto-sp13_S_contig16884:2065..2652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score134.0
Seed ortholog evalue4.2e-29
Seed eggNOG ortholog2880.D7FYB3
Preferred nameRAD54L
Model size333
KEGG koko:K10875
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000280,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000733,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006311,GO:0006312,GO:0006323,GO:0006325,GO:0006338,GO:0006342,GO:0006355,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007568,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0008340,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010212,GO:0010259,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0015616,GO:0016043,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030261,GO:0030491,GO:0030702,GO:0030716,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032075,GO:0032077,GO:0032079,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033170,GO:0033554,GO:0034248,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0035861,GO:0036310,GO:0040029,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043085,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051701,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0061806,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071248,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097617,GO:0104004,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
EggNOG free text desc.DNA repair and recombination protein
EggNOG OGsCOG0553@1,KOG0390@2759
Cds size333
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462884.6425261-CDS-Ecto-sp13_S_contig16884:2064..22781681462884.6425261-CDS-Ecto-sp13_S_contig16884:2064..2278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16884 2065..2278 -
1681462884.6552262-CDS-Ecto-sp13_S_contig16884:2533..26521681462884.6552262-CDS-Ecto-sp13_S_contig16884:2533..2652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16884 2534..2652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16884.4919.1prot_Ecto-sp13_S_contig16884.4919.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16884 2065..2652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16884.4919.1

>prot_Ecto-sp13_S_contig16884.4919.1 ID=prot_Ecto-sp13_S_contig16884.4919.1|Name=mRNA_Ecto-sp13_S_contig16884.4919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRS
FVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEF
YAMTDFTNPGV
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mRNA from alignment at Ecto-sp13_S_contig16884:2065..2652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16884.4919.1 ID=mRNA_Ecto-sp13_S_contig16884.4919.1|Name=mRNA_Ecto-sp13_S_contig16884.4919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16884:2065..2652- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGTTCAGGCTTCACTCGAAGCGTTTCTACGCAAAGGCGGACACCTG
CTGCGACCTACTCATCTGTGATGAGGCTCACCGGCTAAAGAACGCTGACA
CCGCTACCAATCAGGTGATGTGGTTGTACCATGGTGATTATGGTTGCCCG
ATGCCGTCGAAGCTGCGGGTCCTTCGGTAATCGGAGGCGCACGTAGAATC
TGTTGTTCCATGCATTCGAAACTACAAGTTCGATGGTGTTTCACCCCAAT
CAATGTTTTTCTTTGATCTCTATTTGTCCTACAGCAGTGGGTGCGATGGT
GATGCGCGGTATGCACCGTTGGTCAAGCGCATTCCCGTCGCTGGGAATGG
CGAGAGCACAAGCGGCACCGGCAGAGACGGGTCGAGACTCTCTCCGACCC
GCTCTTTCGTCTTCTTGATTGTTTTGTCATTTCTTGAGATTCCCGTTTCC
CTTGCCCGGGGTTGCAACCGAACTTTGCAGGCGTTATCGGCCCTCAAGTG
CCGGAAGAGGGTGCTGCTATCGGGGACCCCGATGCAGAACGACCTAGAGG
AGTTTTACGCCATGACGGACTTCACTAACCCTGGGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16884:2065..2652-

>mRNA_Ecto-sp13_S_contig16884.4919.1 ID=mRNA_Ecto-sp13_S_contig16884.4919.1|Name=mRNA_Ecto-sp13_S_contig16884.4919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16884:2065..2652- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGTTCAGGCTTCACTCGAAGCGTTTCTACGCAAAGGCGGACACCTG
CTGCGACCTACTCATCTGTGATGAGGCTCACCGGCTAAAGAACGCTGACA
CCGCTACCAATCAGGTGATAGACGGGTCGAGACTCTCTCCGACCCGCTCT
TTCGTCTTCTTGATTGTTTTGTCATTTCTTGAGATTCCCGTTTCCCTTGC
CCGGGGTTGCAACCGAACTTTGCAGGCGTTATCGGCCCTCAAGTGCCGGA
AGAGGGTGCTGCTATCGGGGACCCCGATGCAGAACGACCTAGAGGAGTTT
TACGCCATGACGGACTTCACTAACCCTGGGGTA
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