prot_Ecto-sp13_S_contig16884.4919.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16884.4919.1
Unique Nameprot_Ecto-sp13_S_contig16884.4919.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length111
Homology
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.450e-35
Identity = 73/111 (65.77%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQ                                     ALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV
Sbjct:  261 ETFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQ-------------------------------------ALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 334          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A8K1C4Y7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4Y7_PYTOL)

HSP 1 Score: 101 bits (252), Expect = 8.820e-23
Identity = 56/111 (50.45%), Postives = 66/111 (59.46%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFR+H++RF A A +CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEFYAM DFTNP +
Sbjct:  320 ETFRMHAQRF-ADAPSCCDLLICDEAHRLKNANSQINR-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFYAMVDFTNPNI 392          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: W7TPR5_9STRA (Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPR5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.220e-22
Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFR H+K F A    CCD+LICDEAHRLKNA+TATNQ                                     AL+ L CR+RVLLSGTP+QNDL EFYAM DFTNPG+
Sbjct:  328 ETFRGHAKSFPAGCAGCCDVLICDEAHRLKNAETATNQ-------------------------------------ALAKLHCRRRVLLSGTPLQNDLNEFYAMVDFTNPGI 401          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.370e-22
Identity = 56/111 (50.45%), Postives = 65/111 (58.56%), Query Frame = 0
Query:    1 QTFRLHSKRFY-AKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPG 110
            +TFR+H+ RF  A A+T CDLL+CDEAHRLKN DTAT++                                     AL+ LKCR+RVLLSGTPMQNDLEEFYAM DF NPG
Sbjct:  106 ETFRMHAARFGGAHANTSCDLLVCDEAHRLKNGDTATSK-------------------------------------ALAGLKCRRRVLLSGTPMQNDLEEFYAMVDFANPG 179          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A388K9Y3_CHABU (Uncharacterized protein n=2 Tax=Streptophytina TaxID=131221 RepID=A0A388K9Y3_CHABU)

HSP 1 Score: 99.0 bits (245), Expect = 7.880e-22
Identity = 55/111 (49.55%), Postives = 65/111 (58.56%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFRLH K+F+ +++  CDLLICDEAHRLKN  T TNQ                                     AL+A+ CR+RVLLSGTPMQNDLEEF+AM DFTNPGV
Sbjct:  495 ETFRLHCKKFH-ESERSCDLLICDEAHRLKNDKTLTNQ-------------------------------------ALAAMPCRRRVLLSGTPMQNDLEEFFAMVDFTNPGV 567          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A5J5BWB8_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BWB8_9ASTE)

HSP 1 Score: 98.6 bits (244), Expect = 1.040e-21
Identity = 53/111 (47.75%), Postives = 63/111 (56.76%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFR+HS +F    D CCDLLICDEAHRLKN  T TN+                                     AL+AL C++R+LLSGTPMQNDLEEFYAM +FTNPG+
Sbjct:  314 ETFRMHSSKF--SQDGCCDLLICDEAHRLKNDQTLTNR-------------------------------------ALAALSCKRRILLSGTPMQNDLEEFYAMVNFTNPGI 385          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A6A3YSV7_9STRA (Protein CHROMATIN REMODELING 25 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YSV7_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.440e-21
Identity = 54/111 (48.65%), Postives = 65/111 (58.56%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFR+H+++F A A  CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  308 ETFRMHAQKF-ADAPECCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPNI 380          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A225X0F1_9STRA (DNA repair and recombination protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0F1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-21
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFR+H+++F A    CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  284 ETFRMHAQKF-ADTPACCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPNI 356          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: A0A0P1AJX3_PLAHL (Dna repair and recombination protein rad54-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJX3_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-21
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFR+H+++F A    CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  306 ETFRMHAQKF-ADTPACCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPSI 378          
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Match: D0MQ92_PHYIT (DNA repair and recombination protein RAD54 n=13 Tax=Phytophthora TaxID=4783 RepID=D0MQ92_PHYIT)

HSP 1 Score: 97.1 bits (240), Expect = 3.660e-21
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 0
Query:    1 QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRSFVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEFYAMTDFTNPGV 111
            +TFR+H+++F A    CCDLLICDEAHRLKNA++  N+                                     ALS+L CRKRVLLSGTPMQNDLEEF+AM DFTNP +
Sbjct:  307 ETFRMHAQKF-ADTPACCDLLICDEAHRLKNANSQINK-------------------------------------ALSSLACRKRVLLSGTPMQNDLEEFFAMVDFTNPNI 379          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16884.4919.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSB9_9PHAE6.450e-3565.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8K1C4Y7_PYTOL8.820e-2350.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7TPR5_9STRA1.220e-2249.55Rad54-like protein n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A836CHF7_9STRA1.370e-2250.45SNF2 family N-terminal domain-containing protein n... [more]
A0A388K9Y3_CHABU7.880e-2249.55Uncharacterized protein n=2 Tax=Streptophytina Tax... [more]
A0A5J5BWB8_9ASTE1.040e-2147.75Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A6A3YSV7_9STRA1.440e-2148.65Protein CHROMATIN REMODELING 25 n=5 Tax=Phytophtho... [more]
A0A225X0F1_9STRA3.660e-2147.75DNA repair and recombination protein n=1 Tax=Phyto... [more]
A0A0P1AJX3_PLAHL3.660e-2147.75Dna repair and recombination protein rad54-like n=... [more]
D0MQ92_PHYIT3.660e-2147.75DNA repair and recombination protein RAD54 n=13 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 68..111
e-value: 1.2E-12
score: 49.1
coord: 1..53
e-value: 1.0E-5
score: 26.4
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 20..110
e-value: 5.0E-11
score: 41.9
NoneNo IPR availablePANTHERPTHR45629:SF6DNA REPAIR AND RECOMBINATION PROTEIN RAD54-LIKEcoord: 71..111
NoneNo IPR availablePANTHERPTHR45629:SF6DNA REPAIR AND RECOMBINATION PROTEIN RAD54-LIKEcoord: 2..41
NoneNo IPR availablePANTHERPTHR45629FAMILY NOT NAMEDcoord: 71..111
NoneNo IPR availablePANTHERPTHR45629FAMILY NOT NAMEDcoord: 2..41
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 1..110
score: 11.408
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16884contigEcto-sp13_S_contig16884:2065..2652 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16884.4919.1mRNA_Ecto-sp13_S_contig16884.4919.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16884 2065..2652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16884.4919.1 ID=prot_Ecto-sp13_S_contig16884.4919.1|Name=mRNA_Ecto-sp13_S_contig16884.4919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
QTFRLHSKRFYAKADTCCDLLICDEAHRLKNADTATNQVIDGSRLSPTRS
FVFLIVLSFLEIPVSLARGCNRTLQALSALKCRKRVLLSGTPMQNDLEEF
YAMTDFTNPGV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038718SNF2-like_sf
IPR000330SNF2_N
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase