mRNA_Ecto-sp13_S_contig16850.4900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16850.4900.1
Unique NamemRNA_Ecto-sp13_S_contig16850.4900.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16850.4900.1 vs. uniprot
Match: D7G629_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G629_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 2.060e-56
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:  538 MQGVQRARFCHNRKDVEDTYLPGDDALYRLNDGAPRDGRLDLSGWGIRDEDMPGIATVVLANVDAKADTGGVTSLVLDKCWRLTDEGVEALAKHLLEQTTSP 843
            MQGVQRARFCHNRKDVEDTYLPGDDALYRLNDGAPRDGRLDLSGWGIRDEDMPGIATV LANVDAKADTGGVTSLVLDKCWRLTD+GVEALAK  L+QTTSP
Sbjct:    1 MQGVQRARFCHNRKDVEDTYLPGDDALYRLNDGAPRDGRLDLSGWGIRDEDMPGIATVALANVDAKADTGGVTSLVLDKCWRLTDKGVEALAKPFLDQTTSP 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16850.4900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G629_ECTSI2.060e-5695.10Hypothetical leucine rich repeat calmodulin bindin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16850contigEcto-sp13_S_contig16850:332..3524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score204.1
Seed ortholog evalue8.2e-50
Seed eggNOG ortholog2880.D7G629
Preferred nameLRRC29
Model size844
KEGG koko:K04952,ko:K10268,ko:K10275
KEGG TC1.A.1.5.19,1.A.1.5.3,1.A.1.5.4
KEGG Pathwayko04022,ko04024,ko04740,ko04744,map04022,map04024,map04740,map04744
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
Cds size825
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04040,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16850.4900.1prot_Ecto-sp13_S_contig16850.4900.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16850 332..3506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.4173443-CDS-Ecto-sp13_S_contig16850:331..3921681462883.4173443-CDS-Ecto-sp13_S_contig16850:331..392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16850 332..392 -
1681462883.4312143-CDS-Ecto-sp13_S_contig16850:652..7261681462883.4312143-CDS-Ecto-sp13_S_contig16850:652..726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16850 653..726 -
1681462883.442137-CDS-Ecto-sp13_S_contig16850:1653..18331681462883.442137-CDS-Ecto-sp13_S_contig16850:1653..1833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16850 1654..1833 -
1681462883.4531505-CDS-Ecto-sp13_S_contig16850:2329..25451681462883.4531505-CDS-Ecto-sp13_S_contig16850:2329..2545Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16850 2330..2545 -
1681462883.463365-CDS-Ecto-sp13_S_contig16850:3212..35061681462883.463365-CDS-Ecto-sp13_S_contig16850:3212..3506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16850 3213..3506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462883.4738615-UTR-Ecto-sp13_S_contig16850:3506..35241681462883.4738615-UTR-Ecto-sp13_S_contig16850:3506..3524Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16850 3507..3524 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16850.4900.1

>prot_Ecto-sp13_S_contig16850.4900.1 ID=prot_Ecto-sp13_S_contig16850.4900.1|Name=mRNA_Ecto-sp13_S_contig16850.4900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MGRKNAMKGLPTSVKGPAFVVESPLLKEAEWFGDSTHAMMADSTAPGDAA
VVPAVGTTEVFGAVGSASLKRRRKRVVDDDEEDRRASNTVRGPSRKRKND
SFGRSRTPPEPQATPPADIDTMTAGVGGDEDWHSNPSSRASARKRQPSRG
SNKGANKPQRKRIRVTPYEKVSNMQGVQRARFCHNRKDVEDTYLPGDDAL
YRLNDGAPRDGRLDLSGWGIRDEDMPGIATVVLANVDAKADTGGVTSLVL
DKCWRLTDEGVEALAKHLLEQTTSP
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mRNA from alignment at Ecto-sp13_S_contig16850:332..3524-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16850.4900.1 ID=mRNA_Ecto-sp13_S_contig16850.4900.1|Name=mRNA_Ecto-sp13_S_contig16850.4900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16850:332..3524- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGGCAAGTCCATCAAAATGGGGAGGAAAAATGCCATGAAAGGGCTGCC
GACAAGTGTAAAAGGGCCAGCTTTCGTTGTGGAATCGCCGCTTCTGAAGG
AGGCAGAATGGTTCGGCGATTCTACACACGCCATGATGGCTGACAGTACC
GCTCCTGGCGATGCGGCGGTAGTTCCAGCAGTAGGAACGACGGAAGTTTT
TGGTGCTGTCGGCAGTGCAAGCCTGAAGCGAAGACGAAAACGAGTGGTCG
ATGATGATGAGGAGGATAGAAGGGCCAGTAATACCGTGCGTGGTCCTTCG
CGGAAAAGAAAGGTGGGAATGTAGAGCATCCTTTGAAGGTGCCGACGGTG
CGTAAGATACCATACCCCCTGCCCCGAATTTTAAAGCTTGGTTGCCTCTG
CGCACAATAGTGATGGTGCCGACAATGGCAACGTTGCATTAATCTCTTGG
AGAGTGGTATCGAAAACGTGTCATTTGATGTTGGCTCCCTTTTCGTCGTG
GAGTATACTGTAGAGCTTATAATGTCGGTGGAGAGGACGTGGTATCTTAT
ACAACCGTGGTATAGACTGCAACTGTTGAGGTTTGGTAGCAGTACATTGA
AGTAGCGGTAAGTATACATGTTCTGTTCTGCTAAAACTAAAACTATAGCG
ATTGATCTTTAATGGCTCGAATGCTCTCTTTGTTGCGGCTGATGTGTCCT
TGTTTTTAGCCCGTGTCTAATACAGGTACGCGACGCACGAGGTGGCAGGC
AGAGCGTCAATTTTGTGTGAACTCTGCTCCAGCTGTGTTGCAGTTGTTCT
CCCACAGGTGTGCAGAGTATCACACTTCCTTCTGCCAAATTCCTACAGGT
CTCGGAGGATGCACACAAATAGATGATAGCGCATTGCAATTGTTCACTTA
CAAGGCTAGGCTACAAGAGTATGCAGCTAGGACGCTATATTTTACGTTTC
CTACCCACCACGCGCTACATATTTACAAGAACGACAGCTTCGGCCGAAGC
CGGACACCACCGGAGCCACAAGCAACGCCTCCGGCAGACATCGATACGAT
GACAGCAGGGGTGGGGGGTGATGAGGACTGGCATTCCAACCCAAGCTCAA
GGGCCTCGGCGAGAAAGCGGCAGCCCTCCAGGGGCAGCAACAAAGGCGCC
AACAAGCCTCAACGGAAGAGGATTCGTGTCACGCCATACGAGAAGGTATC
GTGGTGCACAGACCAAGAGCACTATACTGCCGTGGCTAAGCCTCAGCGTG
CATCAGGCTGCAGCTATTGAATGCGCGATTGGTCATCTGGAAGGCTTGAC
CGACTATCATGATAATGATAATAATAGGGTGGTATCAGACATCGCTCTTG
TCGTCATACGGGAAATTAATGAACATTGCAAATACACGTGACCTCCAGTG
ACAAATGAGCCCTGTTTAAGGACTTGGCACAAACGAACAGAGCTAGCTGC
TATAGTCGAATGCGCTTGCGCACACACGAGCCGTCTGCGAGCTGAACAAT
TGTCGTGTATACCAAAGAAGAACTCATGTGAAGATCTAGGAGCCCAGACG
TGAAAGGTGTACAGAGGGCATGAGTCGACCCCGATCGCAAGATAAGGGAA
GACACCCCCTCGCCCTTGTCTACATTATTGGTGTACAACATGTGTGAACC
TCTTCGGTCCTGCGTGTTCAACCGACCGCGTCTTCATGAAGGTGTCGAAC
ATGCAAGGCGTGCAGAGGGCACGCTTCTGCCACAACCGAAAGGACGTCGA
AGACACGTACCTCCCCGGAGACGACGCTTTGTACCGCCTTAACGATGGCG
CACCCCGGGATGGGAGGCTCGACCTGTCCGGTTGGGGTATTCGCGACGAG
GATATGCCGGGCATTGCGACGGTAAGATTAACAATACGCGTGCGAACCAG
TTTGCACTTCATTAAAGATCGGACTGCTGTGTGGAGGGTTTGGTCTTGCT
TCCCACAACGGATAAAAAATGGTATCCGTCGTGTCCGACCTTCACTTTTT
GGATTGGACACGTTAACCACGACCAACTCAATGTTCAATGCATGCACGAC
CCCGGTTGTTGCTTCTGCTGTGTTGATAACTTATCTTCGTCATTGCGTTG
CATTTCTTCCTTGCTATATCAACCCGATGTCTCGGGACGAGGTGTCGTCG
TCGCATGTTGAACATATCACACGATACATGTACCAAGAAAGAGATGTTAT
GTTACCCAGCGAGATATTTCAGACCCGATCACACTCAGCGTTTCTCGAAC
ATCGTACACTAAGGCTATGCGCTATGTTTGTTCGCTTTGCAATAAAGCTT
GCATAGCTCTGTTTATTTCTCGCTTTTGGTGAGGTGTTCCACGCCGGATG
GGGAAGAGGGTCACCCTTGTTGTTGGTGAAACCCCCAACACCCAGTAGCA
GCACTCGTGCGGACTGCCTCCACCCCTTCAGGCATTACCCTAGTCCAACA
GTGGTTCTAGCATGGTAACGACAAATCTACGACCCAAAAGGGAGGGATTC
CCTTCAAACCTTTGTGATGTGGTTTTCCCAAGCAACGGCAGGCAGATGTC
CCGTTGTTCACAAATGACTCTCTCGATTTATGTACGGACACAAACAATAG
AGATCTCCTTACAATGTAGACGGCATGTCTTCTTTTGGAACGTGCTGCTG
ATGGGCCTCTCTGATGACTACATGCATGTCCGCCACCAAAGCTACGCCCG
GAACGAAGCATTCTTGTCGTTAGGGATGATAATAACTGCCTTGATAGAGG
TTTGTCAGCAATAAAAATTAAAAAATGCAATATTGAACCATTTCCAAGGT
GGTCTTAGCGAACGTGGACGCGAAGGCAGACACAGGAGGCGTCACCTCCT
TGGTCCTCGACAAGTGTTGGAGGTGGGAGTCACGGAGGGGCAAACATGAA
AGTCAACAAGGGTTCTGCCAGCTTCAGACACGCAATAACAAGCCGTTTGT
CTCGAACACGATCACCCCCCGTTTTGTGGTTCCGTGGAATTAATCCTCGG
CATGGCTTCAGCTTGGATAACTTTCTACGATATTTCTTGGATGATCGTTG
CTTGCGACGACGGTGGAATCTTCAACTGTACAGAATGTTGTTCTATTGAT
GGTGACGATCGGGTGCAATCTCGCGTGAGCAGGTTGACCGACGAGGGCGT
GGAAGCACTAGCCAAGCATTTACTCGAGCAGACCACATCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16850:332..3524-

>mRNA_Ecto-sp13_S_contig16850.4900.1 ID=mRNA_Ecto-sp13_S_contig16850.4900.1|Name=mRNA_Ecto-sp13_S_contig16850.4900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16850:332..3524- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGGAAAAATGCCATGAAAGGGCTGCCGACAAGTGTAAAAGGGCC
AGCTTTCGTTGTGGAATCGCCGCTTCTGAAGGAGGCAGAATGGTTCGGCG
ATTCTACACACGCCATGATGGCTGACAGTACCGCTCCTGGCGATGCGGCG
GTAGTTCCAGCAGTAGGAACGACGGAAGTTTTTGGTGCTGTCGGCAGTGC
AAGCCTGAAGCGAAGACGAAAACGAGTGGTCGATGATGATGAGGAGGATA
GAAGGGCCAGTAATACCGTGCGTGGTCCTTCGCGGAAAAGAAAGAACGAC
AGCTTCGGCCGAAGCCGGACACCACCGGAGCCACAAGCAACGCCTCCGGC
AGACATCGATACGATGACAGCAGGGGTGGGGGGTGATGAGGACTGGCATT
CCAACCCAAGCTCAAGGGCCTCGGCGAGAAAGCGGCAGCCCTCCAGGGGC
AGCAACAAAGGCGCCAACAAGCCTCAACGGAAGAGGATTCGTGTCACGCC
ATACGAGAAGGTGTCGAACATGCAAGGCGTGCAGAGGGCACGCTTCTGCC
ACAACCGAAAGGACGTCGAAGACACGTACCTCCCCGGAGACGACGCTTTG
TACCGCCTTAACGATGGCGCACCCCGGGATGGGAGGCTCGACCTGTCCGG
TTGGGGTATTCGCGACGAGGATATGCCGGGCATTGCGACGGTGGTCTTAG
CGAACGTGGACGCGAAGGCAGACACAGGAGGCGTCACCTCCTTGGTCCTC
GACAAGTGTTGGAGGTTGACCGACGAGGGCGTGGAAGCACTAGCCAAGCA
TTTACTCGAGCAGACCACATCGCCG
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