mRNA_Ecto-sp13_S_contig16783.4857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16783.4857.1
Unique NamemRNA_Ecto-sp13_S_contig16783.4857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16783.4857.1 vs. uniprot
Match: D7FYR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR9_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.540e-41
Identity = 83/97 (85.57%), Postives = 88/97 (90.72%), Query Frame = 3 
Query:   12 EDRNLMDEQRETMSASSDVVPGVTDPDPQGALEEGGGNPYGISAEMLELCSGKILDCGAAGSSTACPAVATTTSSGMAITVAFPDGDKTLLDWKSFF 302
            ED NLMD QR TMSASSDVV G TDPDP+GAL+EGGGNPYGISAEMLELCSGKILDCGA+GSSTACPA ATT +SG+ ITVAFPDGDK LLDWKSFF
Sbjct:  230 EDWNLMDAQRGTMSASSDVVQGATDPDPKGALDEGGGNPYGISAEMLELCSGKILDCGASGSSTACPAAATTITSGIVITVAFPDGDKILLDWKSFF 326
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BLAST of mRNA_Ecto-sp13_S_contig16783.4857.1 vs. uniprot
Match: A0A6H5K7I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7I0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.020e-19
Identity = 59/103 (57.28%), Postives = 65/103 (63.11%), Query Frame = 3 
Query:   27 MDEQRETMSASSDVV-PGVTDPDPQG------------ALEEGGGNPYGISAEMLELCSGKILDCGAAGSSTACPAVATTTSSGMAITVAFPDGDKTLLDWKS 296
            +D+   T S S+  V P +  P P+G            ALEEGGGNP GISAEML LCSG IL C  A SSTACPA AT  S   A TVAFPDGD+TLLDWKS
Sbjct:   50 LDDLMSTWSTSAPAVFPSLVSPAPEGDATAELLEAMSGALEEGGGNPCGISAEMLHLCSGTILHCKPASSSTACPAAATXXSCEKASTVAFPDGDQTLLDWKS 152
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BLAST of mRNA_Ecto-sp13_S_contig16783.4857.1 vs. uniprot
Match: D7G439_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G439_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.680e-5
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 3 
Query:   39 RETMSASSDVVPGVTDPDPQGALEEGGGNPYGISAEMLEL 158
            RE MS SSDVVPG+TDP P   LEEG GNPYGISAE+  L
Sbjct:  204 REAMSTSSDVVPGITDPGP--TLEEGRGNPYGISAEIERL 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16783.4857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FYR9_ECTSI3.540e-4185.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7I0_9PHAE1.020e-1957.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G439_ECTSI4.680e-572.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16783contigEcto-sp13_S_contig16783:788..2832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2045
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002280.1
Cds size279
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.1900783-UTR-Ecto-sp13_S_contig16783:787..8131681462880.1900783-UTR-Ecto-sp13_S_contig16783:787..813Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16783 788..813 +
1681462880.2087193-UTR-Ecto-sp13_S_contig16783:1092..28321681462880.2087193-UTR-Ecto-sp13_S_contig16783:1092..2832Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16783 1093..2832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.1997006-CDS-Ecto-sp13_S_contig16783:813..10921681462880.1997006-CDS-Ecto-sp13_S_contig16783:813..1092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16783 814..1092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16783.4857.1prot_Ecto-sp13_S_contig16783.4857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16783 814..1092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16783.4857.1

>prot_Ecto-sp13_S_contig16783.4857.1 ID=prot_Ecto-sp13_S_contig16783.4857.1|Name=mRNA_Ecto-sp13_S_contig16783.4857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
MDEQRETMSASSDVVPGVTDPDPQGALEEGGGNPYGISAEMLELCSGKIL
DCGAAGSSTACPAVATTTSSGMAITVAFPDGDKTLLDWKSFF*
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mRNA from alignment at Ecto-sp13_S_contig16783:788..2832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16783.4857.1 ID=mRNA_Ecto-sp13_S_contig16783.4857.1|Name=mRNA_Ecto-sp13_S_contig16783.4857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2045bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16783:788..2832+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACCATCTCTGAGGACAGGAACCTCATGGACGAACAGCGGGAAACGATG
TCGGCATCTTCCGACGTTGTGCCGGGGGTCACGGACCCTGACCCCCAAGG
AGCCTTGGAGGAGGGTGGGGGAAACCCCTACGGTATCTCGGCGGAGATGC
TGGAACTATGCTCGGGGAAGATCCTCGATTGTGGCGCAGCCGGTTCTTCG
ACTGCCTGCCCCGCCGTAGCTACCACCACGAGCAGCGGCATGGCCATCAC
TGTAGCTTTTCCCGACGGGGACAAGACACTACTCGACTGGAAATCATTTT
TCTAGCGTGAACGTTCGAGTGATGTAGTGGGCCTCGCCCATGTCCTTTCG
GTACTGTAGTCAGTGAGCGGTTGAGTTGATGGGATTGCGTTAATGTTTTG
TTTAGTTGGCGTGAAGTATGCCTCGTGCGTGGATGGTTGTTTTTGTCCAT
AGGAGAGCGGGCGATGAGCTACGAGGACAAACTGGTGCTCACCGAATTCG
TTGTAAAATAAGTATGTGAGCACAAACTTCGCACACTCCGCTCGTTGTTT
TATTTCTTGTGCGCGTTATGGTGTGATATAAACTTTTGTTTCTGGCGTCT
CCTATATGTTGTGGATACGAACGTTGCTTTTTTCATCGAGTTTTAGTTTG
TTGTATTGAAGTACTTGCGTTGTGATGTTTTCTGTTTAGAGTGGCGTTGC
TTTGTATGTCTCGTTGGCACAGCATACTCCTAATCTGATGTAATTATGCA
GGACATTGAATTGCTCGACCTTCATTGAACAGAACTTTATCCTTATCGTT
TACTTCGTATTTTATAAATAATTAATTTCGTTTCAATTCGGAGGGTGGAA
AGCATAGAAAGATAGGAGTGTCATCGTGTGCATGTGTCCGCATTATTGGG
AAAGGCGCACGGTAACATGGTCTTGCATCCTTACGAGCGAACTTTCCTCC
AGAATGTTTACCTTGGCACCTGCGCGCTTGCTACAGTAGTCGTCGGCCGT
GAGTACCGTGGGGTGGATATTTCTTGCACTTTGCGTTGAACGGGGTGGTT
AGCCGGGAGCGTTGCATTGTAAGGCAGGGCGGTGTCGTGTCGGAGGGTCG
TCGCGAGAAATCTGATTATTTTCGTGTGTGTGTCTTGCTGTACATCGAAT
TCCCTAGCATGATGCTCCTCGCGTATGTCCCACGCAGGGCGGACGACAAT
ATAGGCAGCAACAAGGTAGAAAATCGACATGCTGGCTTCCAGGGACTTGA
TGGGGCAAACAGTATCCACGTTCTTGTGACGAATTTTAGACCTGGAGCTG
TCTTGGGAAGCCAATGAGAGCCCCCTAAGACGTCGGACGATCCAAGCTAT
GCTGGGAATTGGAAATGTGTTGACACTTGACAGTTGGTTCTTGTTGTTTT
CGCGGGTTGGAGGGGTGGGATCGGCGGTGGAAACGACTTGAAATGATTTA
TGCGTTCTCCAAGCGATGTATGTGTTGAGAGTCGGGAATCTATGGGTTCT
GAAACGTGATCTATGTTATTTGTGAGTGCTGGTAACTCTGGAGCTGCCGC
ATTTTTCGATGGTGTGGTGCAGTGGGAGCGCTACGGTTATGGCTTCCTTT
TTGCTGGTGCGTACATAGTTGTCCAGCGCCTGCGCCCGCTTGACACGAAA
GAAAATTTTGGCGAGGGTATTCGTGGTTCACCGGCCACATTGCGGAAATT
AACATTTCATGAGGGTAAGTGGCGAGGTGGTGGTATCTTCTGAATGCACC
CAACTGAATTGTGGGAAGTCTCCTGAGTTGTGCCAACCTGCTGGGTGTCA
CTACGTCTCCCTCTCGAAATCACGATTTTCTGGGTGGAAGCCTTGCCCTT
TTGCTTGCCTGGGGTAGACTGGTGTAGATTTCTCTCTTCTTGCTTGGTGC
GAACATGTCGGGGAAGCGGGAGAGCGGGGGCACTACCATAGAGGAGGGTT
GTTGACTCTAGGACAACGTGGATAGAAAGACATGAAACAGCACGGGATTA
GGCGAAGGCAGACGACGACAATCAACTTCTCCCTCTCTCTCGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16783:788..2832+

>mRNA_Ecto-sp13_S_contig16783.4857.1 ID=mRNA_Ecto-sp13_S_contig16783.4857.1|Name=mRNA_Ecto-sp13_S_contig16783.4857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16783:788..2832+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAACAGCGGGAAACGATGTCGGCATCTTCCGACGTTGTGCCGGG
GGTCACGGACCCTGACCCCCAAGGAGCCTTGGAGGAGGGTGGGGGAAACC
CCTACGGTATCTCGGCGGAGATGCTGGAACTATGCTCGGGGAAGATCCTC
GATTGTGGCGCAGCCGGTTCTTCGACTGCCTGCCCCGCCGTAGCTACCAC
CACGAGCAGCGGCATGGCCATCACTGTAGCTTTTCCCGACGGGGACAAGA
CACTACTCGACTGGAAATCATTTTTCTAG
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