mRNA_Ecto-sp13_S_contig16777.4853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16777.4853.1
Unique NamemRNA_Ecto-sp13_S_contig16777.4853.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16777.4853.1 vs. uniprot
Match: D7FSJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 7.350e-52
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    1 VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFATILGIKGTNRAQKVVKSARPLRII 273
            VLSLYETEDLSSVAGVLDTVCLAAFC ELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFATILGI+GTNRAQKVVKSARPLRII
Sbjct: 1190 VLSLYETEDLSSVAGVLDTVCLAAFCVELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFATILGIQGTNRAQKVVKSARPLRII 1280
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16777.4853.1 vs. uniprot
Match: A0A6H5K0T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T1_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.080e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFAT 204
            VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFAT
Sbjct: 1072 VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFAT 1139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16777.4853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSJ2_ECTSI7.350e-5297.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0T1_9PHAE3.080e-38100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16777contigEcto-sp13_S_contig16777:2817..3648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score184.5
Seed ortholog evalue2.2e-44
Seed eggNOG ortholog2880.D7FSJ2
Preferred nameCATSPER1
Model size275
KEGG koko:K04851,ko:K04854,ko:K04856,ko:K16889
KEGG TC1.A.1.11.1,1.A.1.11.12,1.A.1.11.20,1.A.1.11.21,1.A.1.11.28,1.A.1.11.7,1.A.1.19.1,1.A.1.19.3
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.low voltage-gated calcium channel activity
EggNOG OGsKOG2301@1,KOG2301@2759,KOG2302@2759
Cds size273
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.779818-CDS-Ecto-sp13_S_contig16777:2817..28861681462879.779818-CDS-Ecto-sp13_S_contig16777:2817..2886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16777 2818..2886 -
1681462879.794334-CDS-Ecto-sp13_S_contig16777:3444..36481681462879.794334-CDS-Ecto-sp13_S_contig16777:3444..3648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16777 3445..3648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16777.4853.1prot_Ecto-sp13_S_contig16777.4853.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16777 2818..3648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16777.4853.1

>prot_Ecto-sp13_S_contig16777.4853.1 ID=prot_Ecto-sp13_S_contig16777.4853.1|Name=mRNA_Ecto-sp13_S_contig16777.4853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPW
VLFDVYLVVSHGACTFATILGIKGTNRAQKVVKSARPLRII
back to top

mRNA from alignment at Ecto-sp13_S_contig16777:2817..3648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16777.4853.1 ID=mRNA_Ecto-sp13_S_contig16777.4853.1|Name=mRNA_Ecto-sp13_S_contig16777.4853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16777:2817..3648- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTGTCGCTGTATGAGACAGAGGATCTGTCTAGCGTGGCCGGAGTGTT
GGACACGGTTTGCCTGGCGGCCTTTTGCGCGGAGCTCTGCCTCCGCGCTG
GCGTGTACAGTTGGTGGGCAGGCCCCGACGCCGTCCTCAGGAACCCCTGG
GTGCTCTTCGACGTGTACCTCGTCGTGTCTCACGGTGCTTGCACTTTCGC
AACGGTGAGAGGGGAAGACGGTTAGATCTGTGAGCCGTCCGTCGTGGTAT
TAACATGAATGACCGTAAAAATTGTCGCCGAAAGCGAGATACCGCCAGAG
AAAATAATCAAGACAGCCAGTCACTGGAACTCAATCTTATGGCCCTCGGC
ATGCACGTGTGCTAAGCAACAGACGAGGTTTTCAACGCCAGGCACAGTGA
AAAGGTGCAAGGAAAATAGCTCCAGCCCTACAAGTTCTGTATTTTTGTCC
GTGACTCAGCTTCCGAGTGAAGCAATGGGCTCACCCTCATTTCACGTTCT
GAATTGTTACCCTTGCCGCACGCACACCCCGCGGCACAAGTTTTCTGGGC
ATGTTACCTGTTGTGGGTTTGTTCGTGACCACGTAACTTAGGGTTAGGGG
CTTTGAAGAGAACGGGAGACGGTGAAGAGAACGGGAGACGGGTTACAGTA
TGGGACCAGAACACTTTTGAAACGACCGCAGCAACAGCCTTTCAGCCACA
CTGTACGCACCCGTTCTCTCGCCCAACCCCGATCATGTCTTGCTGCCGAA
ATCTCTCGTCAGATCCTTGGCATAAAAGGGACCAACCGCGCCCAGAAGGT
TGTGAAGTCAGCGCGCCCCCTACGTATCATCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16777:2817..3648-

>mRNA_Ecto-sp13_S_contig16777.4853.1 ID=mRNA_Ecto-sp13_S_contig16777.4853.1|Name=mRNA_Ecto-sp13_S_contig16777.4853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16777:2817..3648- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTGTCGCTGTATGAGACAGAGGATCTGTCTAGCGTGGCCGGAGTGTT
GGACACGGTTTGCCTGGCGGCCTTTTGCGCGGAGCTCTGCCTCCGCGCTG
GCGTGTACAGTTGGTGGGCAGGCCCCGACGCCGTCCTCAGGAACCCCTGG
GTGCTCTTCGACGTGTACCTCGTCGTGTCTCACGGTGCTTGCACTTTCGC
AACGATCCTTGGCATAAAAGGGACCAACCGCGCCCAGAAGGTTGTGAAGT
CAGCGCGCCCCCTACGTATCATC
back to top