prot_Ecto-sp13_S_contig16777.4853.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16777.4853.1
Unique Nameprot_Ecto-sp13_S_contig16777.4853.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length91
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16777.4853.1 vs. uniprot
Match: D7FSJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ2_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 7.350e-52
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0 
Query:    1 VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFATILGIKGTNRAQKVVKSARPLRII 91
            VLSLYETEDLSSVAGVLDTVCLAAFC ELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFATILGI+GTNRAQKVVKSARPLRII
Sbjct: 1190 VLSLYETEDLSSVAGVLDTVCLAAFCVELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFATILGIQGTNRAQKVVKSARPLRII 1280
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16777.4853.1 vs. uniprot
Match: A0A6H5K0T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T1_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 3.080e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:    1 VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFAT 68
            VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFAT
Sbjct: 1072 VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPWVLFDVYLVVSHGACTFAT 1139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16777.4853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSJ2_ECTSI7.350e-5297.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0T1_9PHAE3.080e-38100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027359Voltage-dependent channel domain superfamilyGENE3D1.20.120.350coord: 2..91
e-value: 4.1E-8
score: 35.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 73..91
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..49
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 50..72

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16777contigEcto-sp13_S_contig16777:2818..3648 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16777.4853.1mRNA_Ecto-sp13_S_contig16777.4853.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16777 2817..3648 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16777.4853.1 ID=prot_Ecto-sp13_S_contig16777.4853.1|Name=mRNA_Ecto-sp13_S_contig16777.4853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
VLSLYETEDLSSVAGVLDTVCLAAFCAELCLRAGVYSWWAGPDAVLRNPW
VLFDVYLVVSHGACTFATILGIKGTNRAQKVVKSARPLRII
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027359Volt_channel_dom_sf