mRNA_Ecto-sp13_S_contig16776.4852.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16776.4852.1
Unique NamemRNA_Ecto-sp13_S_contig16776.4852.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16776.4852.1 vs. uniprot
Match: A0A6H5JUK0_9PHAE (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK0_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 4.670e-60
Identity = 107/123 (86.99%), Postives = 110/123 (89.43%), Query Frame = 1 
Query:   94 MHRAFLLLLTASLNCCAACLGVGTMKKVNLTPRTLLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQPYRPINRRRPPLPLAPSAAANTNISWNTHRVSLFVAGTGERECRR 462
            MH  FLLLLTASLNCCAACL VGTMKK NLTPRTLLRRPRSRPTR PVLGISPGTAATATQQRFRGLAFAAP FRH Q +R ++ RRPPLPLAPSAAANT ISWNTHRVSLFVAGTGER  RR
Sbjct:    1 MHPTFLLLLTASLNCCAACLSVGTMKKANLTPRTLLRRPRSRPTRPPVLGISPGTAATATQQRFRGLAFAAPRFRHSQSHRRLHCRRPPLPLAPSAAANTEISWNTHRVSLFVAGTGERGGRR 123
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BLAST of mRNA_Ecto-sp13_S_contig16776.4852.1 vs. uniprot
Match: D7G0N8_ECTSI (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N8_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 4.820e-46
Identity = 90/99 (90.91%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:  166 MKKVNLTPRT-LLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQPYRPINRRRPPLPLAPSAAANTNISWNTHRVSLFVAGTGERECR 459
            MKK NLTPRT LLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQP+R INRRRP LPLAPSAAANT ISWNTHRVSLFVAGTGE + R
Sbjct:    1 MKKANLTPRTILLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQPHRRINRRRP-LPLAPSAAANTKISWNTHRVSLFVAGTGEGDGR 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16776.4852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUK0_9PHAE4.670e-6086.99DNA ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D7G0N8_ECTSI4.820e-4690.91DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16776contigEcto-sp13_S_contig16776:2228..3346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score169.5
Seed ortholog evalue1e-39
Seed eggNOG ortholog2880.D7G0N8
Model size464
KEGG rclassRC00005
KEGG koko:K01972
KEGG ReactionR00382
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.Ligase N family
EggNOG OGs2QWTN@2759,COG0272@1
EC6.5.1.2
Cds size369
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.716267-UTR-Ecto-sp13_S_contig16776:2227..23201681462879.716267-UTR-Ecto-sp13_S_contig16776:2227..2320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16776 2228..2320 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.7273076-CDS-Ecto-sp13_S_contig16776:2320..24331681462879.7273076-CDS-Ecto-sp13_S_contig16776:2320..2433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16776 2321..2433 +
1681462879.7392247-CDS-Ecto-sp13_S_contig16776:3090..33461681462879.7392247-CDS-Ecto-sp13_S_contig16776:3090..3346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16776 3091..3346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16776.4852.1prot_Ecto-sp13_S_contig16776.4852.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16776 2321..3346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16776.4852.1

>prot_Ecto-sp13_S_contig16776.4852.1 ID=prot_Ecto-sp13_S_contig16776.4852.1|Name=mRNA_Ecto-sp13_S_contig16776.4852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MHRAFLLLLTASLNCCAACLGVGTMKKVNLTPRTLLRRPRSRPTRSPVLG
ISPGTAATATQQRFRGLAFAAPSFRHFQPYRPINRRRPPLPLAPSAAANT
NISWNTHRVSLFVAGTGERECRR
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mRNA from alignment at Ecto-sp13_S_contig16776:2228..3346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16776.4852.1 ID=mRNA_Ecto-sp13_S_contig16776.4852.1|Name=mRNA_Ecto-sp13_S_contig16776.4852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16776:2228..3346+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGCACTGGCTTGTGCTCTTGTGCAGCAGCAGTGTAGTAGACCCTTGT
ACGTCAGCAGCGTAGTAGACGGGGGTGGGTGCTTTGTACGGCGATGCACC
GTGCCTTCCTGCTGCTGCTCACAGCCTCGCTAAACTGCTGTGCAGCCTGC
CTTGGCGTGGGAACCATGAAGAAGGTCAACTTGACGCCGAGAACGCTACT
CAGAAGGTGGGAGAGAGGGAGAGAGCATTGTTAATTGTGTGGCGCTTGCT
CCTGCCTTTTCGCCTACACCTGCGCTCTAGGCGGATAGTCACCTTACCAT
TGGTGTTTACTATAAACTTCGTGGGGTGGTTTCAGAAAGGTGTGGGGTTG
TCAGGCAGTGGTGCCAGCAGTGTAAACTGCTGTCCTAGCAGCAGCAGCGT
CTTGCTACTGCACCTTGGCTGTTTAACGCGGCAGCGCCGGTAGGCTCAAG
TACAGTAGACAGGGGGACGTGGTTTCTATGGACACCATCTTTCGCTTTAT
GTCCTTTTTCTACGTAACAAGTCTAAACCTGCTGCCTGGTTGTGTATCGT
TGTTCACCCCACGCATACAAGTTCAAAATTTAAAATTTTGAACGCCTCTG
CCAGATGTCGACGGAAACGAGCCTGCATGGCATCAGCTCTACACCTCATG
TGGCGTAATTCCACCAGACCCCCAAATGCCTTGCGCGCCTGTTGTGCTGG
CGCATATCCTTGACCTCCCCAACAAGGGAAGAGTTGAGAAAAAGTTGACG
TGCGACCTCATTTTGACTCTTTCCCCGCTGGAAGTAATCTACCGTGCCCG
GCCCGCGTGCCGTGCGCCATGCCTGCTTGCTTCCCTCCACTTTTCTGGCG
CGAATCGCCCCAGACCTCGATCTCGGCCCACCCGGTCGCCTGTGCTGGGC
ATTTCACCCGGTACCGCAGCAACAGCAACGCAGCAGAGATTTCGAGGTCT
CGCCTTCGCGGCGCCCAGCTTCCGGCATTTCCAGCCCTACCGACCGATAA
ACCGCCGTCGCCCCCCGCTTCCTCTAGCGCCTTCCGCTGCCGCTAATACC
AACATTTCGTGGAACACGCACCGAGTGTCCCTTTTCGTCGCCGGCACCGG
CGAGAGAGAGTGCCGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16776:2228..3346+

>mRNA_Ecto-sp13_S_contig16776.4852.1 ID=mRNA_Ecto-sp13_S_contig16776.4852.1|Name=mRNA_Ecto-sp13_S_contig16776.4852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16776:2228..3346+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCGTGCCTTCCTGCTGCTGCTCACAGCCTCGCTAAACTGCTGTGC
AGCCTGCCTTGGCGTGGGAACCATGAAGAAGGTCAACTTGACGCCGAGAA
CGCTACTCAGAAGACCTCGATCTCGGCCCACCCGGTCGCCTGTGCTGGGC
ATTTCACCCGGTACCGCAGCAACAGCAACGCAGCAGAGATTTCGAGGTCT
CGCCTTCGCGGCGCCCAGCTTCCGGCATTTCCAGCCCTACCGACCGATAA
ACCGCCGTCGCCCCCCGCTTCCTCTAGCGCCTTCCGCTGCCGCTAATACC
AACATTTCGTGGAACACGCACCGAGTGTCCCTTTTCGTCGCCGGCACCGG
CGAGAGAGAGTGCCGTCGG
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