prot_Ecto-sp13_S_contig16776.4852.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16776.4852.1
Unique Nameprot_Ecto-sp13_S_contig16776.4852.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length123
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16776.4852.1 vs. uniprot
Match: A0A6H5JUK0_9PHAE (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 4.670e-60
Identity = 107/123 (86.99%), Postives = 110/123 (89.43%), Query Frame = 0 
Query:    1 MHRAFLLLLTASLNCCAACLGVGTMKKVNLTPRTLLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQPYRPINRRRPPLPLAPSAAANTNISWNTHRVSLFVAGTGERECRR 123
            MH  FLLLLTASLNCCAACL VGTMKK NLTPRTLLRRPRSRPTR PVLGISPGTAATATQQRFRGLAFAAP FRH Q +R ++ RRPPLPLAPSAAANT ISWNTHRVSLFVAGTGER  RR
Sbjct:    1 MHPTFLLLLTASLNCCAACLSVGTMKKANLTPRTLLRRPRSRPTRPPVLGISPGTAATATQQRFRGLAFAAPRFRHSQSHRRLHCRRPPLPLAPSAAANTEISWNTHRVSLFVAGTGERGGRR 123
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BLAST of mRNA_Ecto-sp13_S_contig16776.4852.1 vs. uniprot
Match: D7G0N8_ECTSI (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N8_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.420e-46
Identity = 90/99 (90.91%), Postives = 92/99 (92.93%), Query Frame = 0 
Query:   25 MKKVNLTPRT-LLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQPYRPINRRRPPLPLAPSAAANTNISWNTHRVSLFVAGTGERECR 122
            MKK NLTPRT LLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQP+R INRRRP LPLAPSAAANT ISWNTHRVSLFVAGTGE + R
Sbjct:    1 MKKANLTPRTILLRRPRSRPTRSPVLGISPGTAATATQQRFRGLAFAAPSFRHFQPHRRINRRRP-LPLAPSAAANTKISWNTHRVSLFVAGTGEGDGR 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16776.4852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUK0_9PHAE4.670e-6086.99DNA ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D7G0N8_ECTSI1.420e-4690.91DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..123
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.736

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16776contigEcto-sp13_S_contig16776:2321..3346 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16776.4852.1mRNA_Ecto-sp13_S_contig16776.4852.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16776 2228..3346 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16776.4852.1 ID=prot_Ecto-sp13_S_contig16776.4852.1|Name=mRNA_Ecto-sp13_S_contig16776.4852.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MHRAFLLLLTASLNCCAACLGVGTMKKVNLTPRTLLRRPRSRPTRSPVLG
ISPGTAATATQQRFRGLAFAAPSFRHFQPYRPINRRRPPLPLAPSAAANT
NISWNTHRVSLFVAGTGERECRR
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