prot_Ecto-sp13_S_contig100282.48.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig100282.48.1
Unique Nameprot_Ecto-sp13_S_contig100282.48.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length64
Homology
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BLAST of mRNA_Ecto-sp13_S_contig100282.48.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.150e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0 
Query:    3 SGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEE 41
            SGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEE
Sbjct:  376 SGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEE 414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig100282.48.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7C0_ECTSI3.150e-15100.00Conserved oligomeric Golgi complex subunit 8 n=2 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..41
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig100282contigEcto-sp13_S_contig100282:39..230 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig100282.48.1mRNA_Ecto-sp13_S_contig100282.48.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig100282 39..230 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig100282.48.1 ID=prot_Ecto-sp13_S_contig100282.48.1|Name=mRNA_Ecto-sp13_S_contig100282.48.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
ESSGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEEVCVCSICCC
LVLPQLLWLLFQLL
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