mRNA_Ecto-sp13_S_contig100282.48.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig100282.48.1
Unique Name	mRNA_Ecto-sp13_S_contig100282.48.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig100282.48.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.150e-15
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1

Query:    7 SGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEE 123
            SGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEE
Sbjct:  376 SGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEE 414

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig100282.48.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig100282.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7G7C0_ECTSI	3.150e-15	100.00	Conserved oligomeric Golgi complex subunit 8 n=2 T...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig100282	contig	Ecto-sp13_S_contig100282:39..230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	77.0
Seed ortholog evalue	3.5e-12
Seed eggNOG ortholog	2880.D7G7C0
Preferred name	COG8
Model size	192
KEGG ko	ko:K20295
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
Exons	1
EggNOG free text desc.	intra-Golgi vesicle-mediated transport
EggNOG OGs	KOG2069@1,KOG2069@2759
Cds size	192
COG Functional cat.	O
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462501.6099224-CDS-Ecto-sp13_S_contig100282:38..230	1681462501.6099224-CDS-Ecto-sp13_S_contig100282:38..230	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig100282 39..230 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig100282.48.1	prot_Ecto-sp13_S_contig100282.48.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig100282 39..230 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig100282:39..230+
coding sequence from alignment at Ecto-sp13_S_contig100282:39..230+

protein sequence of mRNA_Ecto-sp13_S_contig100282.48.1

>prot_Ecto-sp13_S_contig100282.48.1 ID=prot_Ecto-sp13_S_contig100282.48.1|Name=mRNA_Ecto-sp13_S_contig100282.48.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
ESSGDILSLWLLRRVSAFVEQLKGLLPLVEDGGLLRSLLEEVCVCSICCC
LVLPQLLWLLFQLL

mRNA from alignment at Ecto-sp13_S_contig100282:39..230+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig100282.48.1 ID=mRNA_Ecto-sp13_S_contig100282.48.1|Name=mRNA_Ecto-sp13_S_contig100282.48.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100282:39..230+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAGCAGCGGGGACATCTTGTCGCTGTGGCTGCTCCGGAGAGTTAGCGC
GTTCGTGGAGCAGCTGAAGGGCCTCCTACCCCTCGTCGAGGATGGAGGTT
TACTGAGGAGCCTCTTGGAAGAGGTTTGCGTGTGCAGTATTTGTTGTTGT
TTGGTGCTGCCGCAGTTGTTGTGGTTGCTATTTCAGCTTCTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig100282:39..230+

>mRNA_Ecto-sp13_S_contig100282.48.1 ID=mRNA_Ecto-sp13_S_contig100282.48.1|Name=mRNA_Ecto-sp13_S_contig100282.48.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig100282:39..230+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAGCAGCGGGGACATCTTGTCGCTGTGGCTGCTCCGGAGAGTTAGCGC
GTTCGTGGAGCAGCTGAAGGGCCTCCTACCCCTCGTCGAGGATGGAGGTT
TACTGAGGAGCCTCTTGGAAGAGGTTTGCGTGTGCAGTATTTGTTGTTGT
TTGGTGCTGCCGCAGTTGTTGTGGTTGCTATTTCAGCTTCTG