mRNA_Ecto-sp13_S_contig1674.4830.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1674.4830.1
Unique NamemRNA_Ecto-sp13_S_contig1674.4830.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1674.4830.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 8.370e-46
Identity = 91/94 (96.81%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:   22 KGLRDGREELHKAVLHEAFIGLLRSTVRLDRPDAAAAAAGGVLPETLAGDGGRLAAARDDVDRVTLVATLCVLVRQVLARLRIGCPAPAMVALQ 303
            KGLRDGREELHKAVL EAF GLLRSTVRLDRPDAAAAAAGGVLPETLAGDGGRLAAARDDVDRVTLVATLCVLVRQVLARLRIGCPAPAM ALQ
Sbjct:  678 KGLRDGREELHKAVLQEAFTGLLRSTVRLDRPDAAAAAAGGVLPETLAGDGGRLAAARDDVDRVTLVATLCVLVRQVLARLRIGCPAPAMAALQ 771
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BLAST of mRNA_Ecto-sp13_S_contig1674.4830.1 vs. uniprot
Match: A0A6H5L7Q5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Q5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.690e-39
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:   70 EAFIGLLRSTVRLDRPDAAAAAAGGVLPETLAGDGGRLAAARDDVDRVTLVATLCVLVRQVLARLRIGCPAPAMVALQ 303
            EAFIGLLRSTVRLDRPDAAAAAAGGVLPETLAGDGGRLAAARDDVDRVTLVATLCVLVRQVLARLRIGCPAPAM ALQ
Sbjct:    6 EAFIGLLRSTVRLDRPDAAAAAAGGVLPETLAGDGGRLAAARDDVDRVTLVATLCVLVRQVLARLRIGCPAPAMAALQ 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1674.4830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIV9_ECTSI8.370e-4696.81Novel protein containing a T-complex protein 11 do... [more]
A0A6H5L7Q5_9PHAE1.690e-3998.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1674contigEcto-sp13_S_contig1674:7915..9843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score166.0
Seed ortholog evalue9e-39
Seed eggNOG ortholog2880.D8LIV9
Model size305
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.regulation of sperm capacitation
EggNOG OGsKOG1981@1,KOG1981@2759
Cds size303
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.2989244-CDS-Ecto-sp13_S_contig1674:7915..79691681462878.2989244-CDS-Ecto-sp13_S_contig1674:7915..7969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 7916..7969 -
1681462878.3083766-CDS-Ecto-sp13_S_contig1674:8488..86921681462878.3083766-CDS-Ecto-sp13_S_contig1674:8488..8692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 8489..8692 -
1681462878.318622-CDS-Ecto-sp13_S_contig1674:9798..98431681462878.318622-CDS-Ecto-sp13_S_contig1674:9798..9843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1674 9799..9843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1674.4830.1prot_Ecto-sp13_S_contig1674.4830.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1674 7916..9843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1674.4830.1

>prot_Ecto-sp13_S_contig1674.4830.1 ID=prot_Ecto-sp13_S_contig1674.4830.1|Name=mRNA_Ecto-sp13_S_contig1674.4830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
GERARRAKGLRDGREELHKAVLHEAFIGLLRSTVRLDRPDAAAAAAGGVL
PETLAGDGGRLAAARDDVDRVTLVATLCVLVRQVLARLRIGCPAPAMVAL
Q
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mRNA from alignment at Ecto-sp13_S_contig1674:7915..9843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1674.4830.1 ID=mRNA_Ecto-sp13_S_contig1674.4830.1|Name=mRNA_Ecto-sp13_S_contig1674.4830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1929bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:7915..9843- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGAGCGAGCTCGTCGCGCAAAGGGGCTTCGCGACGGCCGAGAGGTATA
CATATGTGTATCACAGACCTTGTTATTAAATAAGAGATTACAACAGAACG
AACCACCCCACCCTTGTTTACCGTTGGAGCCCCCATGTCTATGAGGGTAA
CCCCATGGCCACCAATTGATGTCCGTGGTGATAACCCCGCGTGATGTTAC
ACCGTTCCGGGTGGTGGTTAGATGGACAGTTCCTGGAATGATATATAGTT
TTGTCGGTCCGTTTTATTCTTGGTTTAGCCCGAGGTATGCTGCAAAGAGC
AGAACTTGTCTTCTTGGCACATGTATATATTGTGTTTGACCCGTTTTTTT
ATTTTTTTTGTTTACCGTCGTTGCAGCAATACGTGTGCCACATATCAACT
TGCTCTTCCCGTAACTCCTTCTGTAGAAGCCTTCACTCTCGACAAACATT
CAAGGCGCGGAGCGCCCTCCAAGCGATGGTATGCATAAAGAGACAGCCCC
CTTAGACAGTAGTACTTACCCAGCAGCGGCTCCTCTTTCGTAGGGAGTAC
AGAACGCGCCCCCAATAAAGAATCGCTATTATGGTTTTGGCCCGAGGGTG
GGGTGGGTTCTTACTGTATTCCTAGGGTCATGCTACGCATGGTCGTTATA
TAGGTTTTAGTGCGGGGGTTCTTAACCGAGCTCGCAAATGGTGCTAAATA
CCTGAAGGAAATGAATTTTTGAGGCTCACTCCCTTTAACTCCTGGGTAAG
TGCGGGCGTGCTCTTTAATAGAAGAAATTCGCAGCGAAAACAAATGCGAA
GCAAGAATGACACGACGCGTTTAGCCGGGGTCCACACCGGATGTATGCCT
CGTTTTCGTGAACGGTAACCGTGAGACTGCGAGAGGGAGCGAAAGTCGAT
GCTCGTTTCTAGACCGCAAACTGACAGGCAATGCAAAAACAAAATGGTTC
TGCGTATCTCCATGCGCAATCGCTCTATGACAAGATAATTGAGGATTGAA
ACTGCTGCTTGACAAGTATATGTTTGAACGTGTACGGTAGTTTAGCACCA
TGCTTCTAGAGCACTCCGTCACGCGAAAATTCCCCCTTGCCGACCACTTC
CTCCCTAACCTCCTCTCCTTATGCAACAAAAAATTAAAAACATGTCCAAA
GGAGCTCCACAAGGCCGTTCTGCACGAGGCGTTTATCGGCCTGCTACGAT
CGACGGTCCGGCTCGATCGCCCCGACGCTGCCGCCGCCGCTGCGGGTGGC
GTGCTCCCGGAGACGCTTGCGGGCGACGGGGGAAGGCTTGCCGCGGCCAG
GGATGACGTAGACAGGGTCACCCTTGTGGCCACGCTGTGTGTCCTCGTGA
GACAGGTGTGCGCATCTACGGGTAATACTACTGTACCTGTGTTTTTTTCT
CGTGTTTTTTTCATCATGTATGGGTCTTGATTTTTTTACGGCGACTTCGT
ATCGTGCCGCCGCGTGTTGTACGAAGCATTTATAGATATGTATATCTTTC
AGCATGGGGGGCTTGTTTCTTTTTTGCTGGCACCCTCCTGTCGTGCCGTC
GTATATTGTGCGTTGTAAGCACGAAAAACATCAAACAAAGGGTGTGTTTT
AGTGGCTTCTTTCTGCCAGTCATGTCCCTCTCCCCCACGCCTACGCTTTT
CCTGACCCCCCCCCCCCCCCACCTCCCCCCCTCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCGCACCCTACGCTAATCGCGCCATNNNNNNN
NNNTTTTTTTCCCGTCCTGTTCCCCCCCCCCCCCCCCTCCCCTTTTCCCT
CCCCCCCCCCCCCCATGTCCCCCCTTCTTCCCCCCCCCCCCCCCCGATCT
ACCCCTGGTTGGATTACGCTAAAGGTGCTGGCACGGCTGCGTATCGGGTG
CCCGGCTCCGGCGATGGTAGCCTTGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1674:7915..9843-

>mRNA_Ecto-sp13_S_contig1674.4830.1 ID=mRNA_Ecto-sp13_S_contig1674.4830.1|Name=mRNA_Ecto-sp13_S_contig1674.4830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1674:7915..9843- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGAGCGAGCTCGTCGCGCAAAGGGGCTTCGCGACGGCCGAGAGGAGCT
CCACAAGGCCGTTCTGCACGAGGCGTTTATCGGCCTGCTACGATCGACGG
TCCGGCTCGATCGCCCCGACGCTGCCGCCGCCGCTGCGGGTGGCGTGCTC
CCGGAGACGCTTGCGGGCGACGGGGGAAGGCTTGCCGCGGCCAGGGATGA
CGTAGACAGGGTCACCCTTGTGGCCACGCTGTGTGTCCTCGTGAGACAGG
TGCTGGCACGGCTGCGTATCGGGTGCCCGGCTCCGGCGATGGTAGCCTTG
CAG
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