mRNA_Ecto-sp13_S_contig1673.4820.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1673.4820.1
Unique NamemRNA_Ecto-sp13_S_contig1673.4820.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: D7G0N8_ECTSI (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N8_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 8.580e-98
Identity = 198/285 (69.47%), Postives = 209/285 (73.33%), Query Frame = 3
Query:  471 SILEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGG---MIGGGSGGDAVVEGGGMGSAGGG-AWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIGLPP 1313
            SILEGREGWGRLSARNVLDAVDRAKDGVSLGRFI+SLG+PLVGARMAEVIAE FNG+FEAFWGALT         +                                         V+ TGPTEPAAAEAF+G+QGMGPAMLASLLRFAKA+NGNRPVVEALASEVRFSARAR RH GG   M+      DAVV            AWVEGKTVVFTGTLTRMKR ETQEAARELGARVTGSISRKTD+VVVGLNPGGKLEKARELGVEV+SEEEWYRRIGLPP
Sbjct:  931 SILEGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFWGALTRAGLPTPPKV-----------------------------------------VNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASEVRFSARARRRHAGGGEWMVAL----DAVVXXXXXXXXXXXXAWVEGKTVVFTGTLTRMKRTETQEAARELGARVTGSISRKTDMVVVGLNPGGKLEKARELGVEVVSEEEWYRRIGLPP 1170          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A6H5JUK0_9PHAE (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK0_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 1.260e-67
Identity = 157/212 (74.06%), Postives = 163/212 (76.89%), Query Frame = 3
Query:  492 GWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTR 1127
            GWGRLSARNVLDAVDRAKDGVSLGRFI+SLG+PLVGARMAEVIAE FNGDFEAFWGALT RASDASQALEAAQHTRDRETAAVANTAAER       XXXXX        V+  GPTEPAAAEAF+G+QGMGPAMLASLLRFAKA+NGNRPVVEALAS VRFSARAR                             AWVEGKTVVFTGTLTR
Sbjct: 1015 GWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGDFEAFWGALT-RASDASQALEAAQHTRDRETAAVANTAAERQETNAAAXXXXXVAAATFAAVNGNGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASGVRFSARARRXXXXXXXXXXXXXXXXXXX--XXXXXXXAWVEGKTVVFTGTLTR 1223          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A6H5K6N5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N5_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.060e-48
Identity = 103/135 (76.30%), Postives = 108/135 (80.00%), Query Frame = 3
Query:  606 MAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGG 1010
            MAEVIAE FNGDFEAFWGALT RASDASQALEAAQ TRDRETAA+ANTAAER                    V+   PTEPAAAEAF+G+QGMGPAMLASLLRFAKA+NGNRPVVEALASEVRFSARAR RHRGG
Sbjct:    1 MAEVIAEEFNGDFEAFWGALT-RASDASQALEAAQRTRDRETAAIANTAAERQVPNHAAADAAVAAATVAA-VNGNDPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASEVRFSARARRRHRGG 133          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A2D4V3S4_9RHOB (DNA ligase n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A2D4V3S4_9RHOB)

HSP 1 Score: 114 bits (286), Expect = 9.540e-23
Identity = 96/278 (34.53%), Postives = 130/278 (46.76%), Query Frame = 3
Query:  477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTG-PTEPAAA-EAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
            L+ REGWG  SA N+ DA+D  +  + LGR IFSLGI  VG  +A  +A  +       W AL +       A++AA+   +R   A A   AER                      +   P E  AA +   GV G+G  +  SL+  + A    R  ++ L +++      R                         A  G+ V GKTVVFTGTL +M R E +  A  LGA+V+GS+S+KTD+VV G   G K  KARELGVE+M E+ W   IG
Sbjct:  513 LKNREGWGEKSANNLFDAIDERRK-IPLGRVIFSLGIRHVGEVVANDLARHYLS-----WSALLT-------AVDAARPAMERYRQAEAAVEAERKAAAEEGRRARLKETRDAAWAQEPAVPQEARAAWDDLVGVDGIGHTVAVSLVT-SFAQEAERASIDRLVAQLEIEDAER------------------------PATEGSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKEAKARELGVELMDEDSWLALIG 752          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A2E2PD30_9RHOB (DNA ligase n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2E2PD30_9RHOB)

HSP 1 Score: 114 bits (285), Expect = 1.210e-22
Identity = 97/276 (35.14%), Postives = 126/276 (45.65%), Query Frame = 3
Query:  477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
            L+ REGWG  SAR + DA+D  K  + L RFIFSLGI  VG   A  +A  + G     W ALT +A DA++    A    D      A TA  R                        G    AA +   GV G+GPA+ ASL   A A+   R  +E LA ++                     DA             + V GKTVVFTGTL +M R E +  A  LGA+V GS+S KTD+++ G   G K +KA ELG++ + E+ W   IG
Sbjct:  494 LKNREGWGETSARKLFDAIDE-KRRIDLARFIFSLGIRHVGEVAARDLALHYLG-----WDALT-QALDAARPAALAHRAADE-----AETAERRVAQDEGRRARIAEVRAAAIAGVAPGDVAQAAWDDLIGVDGIGPALAASLSD-ALANPDERTAIEDLAQQLNIQPP----------------DAPAA---------DSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVAGSVSAKTDILIAGPGAGSKAKKAAELGIDTLDEDGWLALIG 731          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: UPI001C0A609E (NAD-dependent DNA ligase LigA n=1 Tax=Citreicella sp. C3M06 TaxID=2841564 RepID=UPI001C0A609E)

HSP 1 Score: 112 bits (281), Expect = 3.890e-22
Identity = 95/278 (34.17%), Postives = 132/278 (47.48%), Query Frame = 3
Query:  477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQH-TRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAA-EAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
            L  REGWG  SA N+ DA+D  +  + LGR +FSLG+  VG  ++  +A  +   + A   AL +  + A +  EA Q  TR+R+ AA     A+                      D   P E  AA +   G+ G+G  +  SL+  +      R  ++ LA+ +      R                         A  G+ V GKTVVFTGTL RM R E +  A  LGA+V+GS+S+KTD+V+ G   G K EKARELGVE+M E+ W   IG
Sbjct:  513 LRNREGWGEKSANNLFDAIDEKRK-IPLGRLLFSLGLRHVGEVVSNDLARHYL-SWSALINALDAARAAAVRYREAEQAVTRERQAAAAEGRRAK-----------LKETRDGCWAADPAIPAEARAAWDELIGIDGIGETVAVSLVT-SFGQPTERASIDRLAACLDIQDAER------------------------PASDGSPVAGKTVVFTGTLERMTRAEAKARAEALGAKVSGSVSKKTDIVIAGPGAGSKGEKARELGVEIMDEDAWLALIG 752          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A1H5SKK5_9RHOB (DNA ligase n=1 Tax=Jhaorihella thermophila TaxID=488547 RepID=A0A1H5SKK5_9RHOB)

HSP 1 Score: 112 bits (281), Expect = 3.940e-22
Identity = 97/284 (34.15%), Postives = 126/284 (44.37%), Query Frame = 3
Query:  477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFW--------GALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
            L+ REGWG  SA N+  A+ RA+  + L R IF+LGI   G   A  +A  + G +EAF          AL  RA+D ++A E     R+     +A   A                           P   AA E   G+ G+GP +LA  L  A A+   R  ++ L S +      R                         A   + V GKTVVFTGTL +M R E +  A  LGA+V GS+SRKTDLVV G   G K  KA ELGVE++ E+ W   IG
Sbjct:  519 LKNREGWGEKSAENLFAAI-RARRRIPLNRLIFALGIRHAGEAAARDLAR-YYGTWEAFVHAIDTARPAALAHRAADEAEAAERIAAQREGRRPEIAKVRARAWEACAVP------------------PEAKAAWEELTGIDGIGP-VLALSLSDAFANPEERASIDRLVSHLEVEPVER------------------------PAAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVAGSVSRKTDLVVAGPGAGSKARKAAELGVEIIDEDSWLEMIG 757          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: UPI00169EB2D2 (NAD-dependent DNA ligase LigA n=1 Tax=Salipiger sp. HF18 TaxID=2721557 RepID=UPI00169EB2D2)

HSP 1 Score: 107 bits (268), Expect = 8.970e-22
Identity = 97/277 (35.02%), Postives = 128/277 (46.21%), Query Frame = 3
Query:  477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVR-FSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
            L+ REGWG  SA+N+ DA+D  +  + LGR IFSLGI  VG  +A  +A  +     A W  L   A DA  A  AA+  R  ETA  A                              G    AA E   G+ G+G  +  SL+  +      R  V+ L +E+R   A  R                + +         G+ V GKTVVFTG L +M R E +  A  LGA+V+GS+S+KTD+VV G   G K  KARELG+E+M E+ W   IG
Sbjct:  103 LKNREGWGEKSAQNLFDAIDERRT-IGLGRVIFSLGIRHVGEVVANDLARHY-----ASWDKLIE-AVDA--ARPAAERYRQAETAVEAERKTAAAEGRRARIKETRDAAWEAEPPVSAGAR--AAWEDLVGIDGIGQTVAVSLVT-SLGQTTERASVDRLIAELRTIEAPER---------------PLTD---------GSPVAGKTVVFTGALEKMTRAEAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALIG 343          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A258MUZ8_9HYPH (DNA ligase (NAD(+)) LigA (Fragment) n=1 Tax=Azorhizobium sp. 35-67-15 TaxID=1970320 RepID=A0A258MUZ8_9HYPH)

HSP 1 Score: 107 bits (266), Expect = 9.930e-22
Identity = 96/289 (33.22%), Postives = 135/289 (46.71%), Query Frame = 3
Query:  477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFR-------------GVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
            LE REGWGR SA+ +  A++  +  ++L RFIF+LGI  VG   A+ +A  + G  EA          DA+ A E  +       AA A  A++                       +  P EP  A+  R              + G+G  +  +++ F +  + NR VVEAL  EV                     +AV           G+ V GKTVVFTG+L RM R E +  A  LGA+V GS+S KTD++V G   G KLEKAR LGV+V++E+EW+  +G
Sbjct:   89 LENREGWGRTSAQKLFAAIEERR-AIALDRFIFALGIRHVGETNAKRLARHY-GAMEAL--------RDAALAAEMPEEME----AAAAPEASQA----------------------EVTPEEPGPAKVRRRKPQGNDAWAEMINIDGIGAVVAEAVVDFFREPH-NREVVEALLKEVSPQPL----------------EAVST---------GSPVSGKTVVFTGSLERMTREEAKAMAERLGAKVAGSVSAKTDILVAGPGAGSKLEKARALGVQVITEDEWFDLVG 315          
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A7Y7DPY9_9RHOB (DNA ligase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7Y7DPY9_9RHOB)

HSP 1 Score: 110 bits (275), Expect = 1.060e-21
Identity = 96/276 (34.78%), Postives = 124/276 (44.93%), Query Frame = 3
Query:  477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
            L+ REGWG  SA+N+ DA+D  +  + LGR IFSLGI  VG  +A  +A  +     A W  L   A DA  A  AA+  R  ETA  A                              G    AA E   G+ G+G  +  SL+  +      R  V+ L +E+R        H  G                         V GKTVVFTG L +M R E +  A  LGA+V+GS+S+KTD+VV G   G K  KARELG+E+M E+ W   IG
Sbjct:  312 LKNREGWGEKSAQNLFDAIDERRT-IGLGRVIFSLGIRHVGEVVANDLARHY-----ASWDKLIE-AVDA--ARPAAERYRQAETAVEAERKTAAAEGRRARIKETRDAAWEAEPPVSAGAR--AAWEDLVGIDGIGQTVAVSLVT-SLGQTTERASVDRLIAELRTIEAPERPHTDGSP-----------------------VAGKTVVFTGALEKMTRAEAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALIG 552          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0N8_ECTSI8.580e-9869.47DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5JUK0_9PHAE1.260e-6774.06DNA ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5K6N5_9PHAE4.060e-4876.30Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A2D4V3S4_9RHOB9.540e-2334.53DNA ligase n=3 Tax=Rhodobacterales TaxID=204455 Re... [more]
A0A2E2PD30_9RHOB1.210e-2235.14DNA ligase n=2 Tax=Rhodobacteraceae TaxID=31989 Re... [more]
UPI001C0A609E3.890e-2234.17NAD-dependent DNA ligase LigA n=1 Tax=Citreicella ... [more]
A0A1H5SKK5_9RHOB3.940e-2234.15DNA ligase n=1 Tax=Jhaorihella thermophila TaxID=4... [more]
UPI00169EB2D28.970e-2235.02NAD-dependent DNA ligase LigA n=1 Tax=Salipiger sp... [more]
A0A258MUZ8_9HYPH9.930e-2233.22DNA ligase (NAD(+)) LigA (Fragment) n=1 Tax=Azorhi... [more]
A0A7Y7DPY9_9RHOB1.060e-2134.78DNA ligase n=1 Tax=Rhodobacteraceae bacterium TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1673contigEcto-sp13_S_contig1673:554..5659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score256.5
Seed ortholog evalue1.2e-65
Seed eggNOG ortholog2880.D7G0N8
Model size2041
KEGG rclassRC00005
KEGG koko:K01972
KEGG ReactionR00382
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Ligase N family
EggNOG OGs2QWTN@2759,COG0272@1
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-14_001690.3
EC6.5.1.2
Cds size726
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1673.4820.1prot_Ecto-sp13_S_contig1673.4820.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1673 2769..4949 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.562553-UTR-Ecto-sp13_S_contig1673:553..6721681462877.562553-UTR-Ecto-sp13_S_contig1673:553..672Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1673 554..672 +
1681462877.5817425-UTR-Ecto-sp13_S_contig1673:1335..17811681462877.5817425-UTR-Ecto-sp13_S_contig1673:1335..1781Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1673 1336..1781 +
1681462877.5921552-UTR-Ecto-sp13_S_contig1673:2728..27681681462877.5921552-UTR-Ecto-sp13_S_contig1673:2728..2768Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1673 2729..2768 +
1681462877.6300514-UTR-Ecto-sp13_S_contig1673:4949..56591681462877.6300514-UTR-Ecto-sp13_S_contig1673:4949..5659Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1673 4950..5659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.601666-CDS-Ecto-sp13_S_contig1673:2768..28331681462877.601666-CDS-Ecto-sp13_S_contig1673:2768..2833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1673 2769..2833 +
1681462877.6120129-CDS-Ecto-sp13_S_contig1673:3525..39811681462877.6120129-CDS-Ecto-sp13_S_contig1673:3525..3981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1673 3526..3981 +
1681462877.6211276-CDS-Ecto-sp13_S_contig1673:4744..49491681462877.6211276-CDS-Ecto-sp13_S_contig1673:4744..4949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1673 4745..4949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1673.4820.1

>prot_Ecto-sp13_S_contig1673.4820.1 ID=prot_Ecto-sp13_S_contig1673.4820.1|Name=mRNA_Ecto-sp13_S_contig1673.4820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
MAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAA
ERQEETSAAAADAPAAAATAAAVDDTGPTEPAAAEAFRGVQGMGPAMLAS
LLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGG
GMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTD
LVVVGLNPGGKLEKARELGVEVMSEEEWYRRIGLPPGSGRG*
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mRNA from alignment at Ecto-sp13_S_contig1673:554..5659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1673.4820.1 ID=mRNA_Ecto-sp13_S_contig1673.4820.1|Name=mRNA_Ecto-sp13_S_contig1673.4820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5106bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1673:554..5659+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACAAGGCCGTAACCCGCTGCCCGGCGGGCCTGAGCTGCCCAGCCCA GGCGGTGGAGCGGCTGAAGCACTTCGTTTCCAAGGGAGCGTTCGACATTC AGGGGCTAGGCCCGGCAAGGTGTGGTGGGTGGATGTTTTACCTTGTGACG TGGGACGTAGATTGACCACGTATAATTTGCGATGTAGTACATACATTGAA CACGTGCGTGCCGGTTTGCAAGTATGTACCCTAGCGGATGACCCAACCAC GACGGAACCGACCATAAAAAACATCCAGAAGTTTTGTACAAGCTTGTCAA TATTGCTTTTTGTCGGACCAGCGGAGGGTATGGTACGGAATAGCATGGCG ATGGCTGTGCCTGCCCGCGAGTAATTTCGGCACCTCGTGTGCATGTCTAT TGTGAGTTTGCCATGGTCATCGAGGTAGTACGGTGTTTCACGCGTACAGA GTAATAAGAGCTTCCTTGGTAACCGGAACAGTTTGTTTGGAGTTGTGTAT TGTGTGTGTTCGATCCGTGCGTTGCCGTGCATATATATGGCCTCGTTTTC GTCAATGTAAGAAGCGGCAGCAGCAGAGTCAACGCGCCCCGACCACCAGC TCCCTCCCAATCTTCCACCTGTATGTATTGAAACACCTATAACCCGTCAC CGCTGCCGCCACCGCCATCATCTCACGACGTGGACACCAACCACCGTCAC CAGCACCCGCGGCTGAAACCCCAAACGCTGAAATGAATCCCGCCGCGTGT GTCTCAACCACTCTTTGTGGATGGGCGGTTAGACTGCTCGAGCTGTACGA AGCTGGGATCGTCCGCAGCCCGGTCGACGTCCTCAGACTGCGCTCGCAGA CAGCGGTGCAAGCGCGGCCGCCGTCGCCGCCGACGCCTGCCGCAGCAGCC CCTCTGGCCGACGAACGAGAGAGGGAGTTGGAAGACGGGCTCGAGGGCGG CTGCGTCAGAGAAGGTAACAAAGGCGAAGATGGTGGCGACAAGAAGAAGA AGATAGCAGAAATAAGACAAAAGTGAAGAATAAATCGTCGAGCGCCGCAA AGAACCAGGGCGGGGACGGCAGCAGTGACCGAAATGAGCCGGTGAAGGAG GAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGTCGATCCTGGAGGGGAG GGAAGGGTGGGGGCGGCTGTCCGCGAGGAACGTGCTGGATGCGGTGGACA GAGCCAAGGACGGCGTTTCGCTCGGACGGTGAGCGGAGTGTGGCATTCGG CGGTTTTAGAAGCCGGGATCAAACTATTAGACTAGTCAGCGGTGACTGTT CTAATGGTTTGATTTTGACTTCTTTTTGTTGTGCGTCATTCGGACCTCAG GGCTAAATTTGTAGAGACCGAAATCAAAACCATTAGACTAGTCAGCGCTG ACTTCTTTATTGGTTTGGTTCCGGATTCCGGATTATTTACGTCGTGCGTC ATTTAGACCCCACATCTTACTTTTTTAGAAGCCGACATCAAACCGGTAGC TTAGTCAGCTTTAATGGTTTGATTCGGCTTCTATATGTTGTGCGACGGTG GTACAGCGTTGGTGGGCTGTGCATATCGCCGCGTGGATAAGGTCAGTCGT CAGGTAGGAGGTCGATGAAATGGCGTGACGAGGATGGAATTATTCAACTT GCCGCGATAGATACTTTCAAATCTAGTACCAGGTACATGTTTGTTTCCCT TGGACGCAAAGCAGGCCAGAACCGCCTTTTTTGTCGTCTGTGCGGGTGGC ACATCTTTTTTGTTTAGGCTTTGAGAAGGGTCTCAGCACATTTATTTCAA AAGAACCTTCGTGAGCACCAGCAGACCGCGGCGGTGCAAGCTGGCAGGCA GGCAGCGCTTGGTTGTATTTTCCGGGTCGGCTCCGTCTCAATTTATTCGC GGCGCAAGGGGGAGCGGTCTCCGTGCCGACACAGTGTGCTCAACATATGC ACACGCAGCGACTGTTTTTTTTTTGTCATCCTATTTAATATGTGCGTCTG TCCTTCCATATTTCGGTGCATTTCTGGACGCACCAGCAAGCGTCATCACC CAGCATTACACAGTTTATGTCTTGATGTTTTTTGTCTTTCTTCCGGTCTT CCTTTTTCTTCAACCGTGTTGTCATTCATTCACCGTCGCTGCTGCTGCTG CCTCACCGCCGCCCTTACTCCTCAGGTTCATATTTTCCTTGGGTATTCCG CTCGTGGGCGCGCGCATGGCGGAAGTAATCGCCGAGGGGTTCAACGGAGA TTTCGAGGCGTTTTGGGGAGCGCTCACAAGGTCAGTTGACCCCTGCTGTG CGGCGAGGTGTCGGCGTGCGGAAGGGTTGGTGTGCGCCCATGACGCGACT CTTGTTCGCTCTTCAGCAATCAACTCCTTATTTTTTCTCGGCGATTGTGA TGGGTCATTCAAGGTCTTTTGGGTTGGGGTTGTTCTAGTTGGTGGTGGTG GTGGGCGTGGTGTTTTTGTCGTCACCTTGTCACAAGAAAAAAACGTTCTG TCCTCTACCATTCAACGTTTCTTCTCACGTACTCTTGAAGGAGAAATTCA AACGTTTCCGTGTCCACCGGCGCTATGTACTGTACCCCAACTCAACGTGA AAAAAAAACGCCCCAGGTAGAGGAGGCGTGTTCATTGTGAGGTATTGTTA TCTAGGGTCTTTTTTATCTTTCGGTTTTATAGCTGTGTTGGCGTGTGCTG TGTGGTCGTTAGCCGGCCACTGTTCCAAACGCCCTGACCATCTAATCCCT CTGAAAAAGTGTAACCTTAATTTTCAGCCCCTCGGTGAGTTGAACTATCG TTGTCGATTGTGCCAAACGGACGTGTCCCGTGTGGTGTGTTGAATTTATC GTGAACCTTGGAACGTCCGCTTCTCTTGTTGCGTCGTTGAGCTGACGTTT TTTTTCGCCATCCCTCCCCGTTCCTCCTGGCAACACTCTCATGGCAAAAC TTGCTGCTTTATTGCCGGAGAGCAGGGCTTCGGACGCGTCCCAAGCGCTA GAGGCGGCCCAACACACCCGAGACAGAGAAACCGCCGCCGTCGCCAACAC CGCCGCTGAACGACAAGAAGAAACCAGCGCCGCCGCCGCGGATGCTCCCG CCGCCGCCGCCACTGCTGCAGCCGTCGACGACACCGGTCCGACTGAGCCC GCCGCCGCAGAGGCGTTCCGGGGCGTCCAGGGCATGGGCCCAGCGATGCT CGCCTCCCTGCTTCGCTTCGCGAAAGCAGATAACGGTAATCGGCCGGTGG TGGAGGCGCTCGCGTCGGAGGTCCGATTCTCGGCACGGGCTCGTGGGCGT CATCGGGGGGGGATGATTGGTGGTGGTAGTGGTGGCGATGCGGTCGTTGA AGGGGGGGGGATGGGGTCCGCAGGCGGCGGCGCTTGGGTGGAGGGGAAGA CTGTGGTCTTCACCGGGACTTTGACGAGGTAAGCAAGTACGGGGGGGAAG GGGGGGAGAGGGGGCTGGTCGGTCGGGCCTTGGGCTGTTTTTTGCGGGGG GGGGGTGGCGAGGAGATGGAAGTGGTATGAAGTGTCGTGCCTGCAGCATA TGGCTCAGGGATTGTTTTTTGTTTGTTTGGATCTTCGAGTTTGGATCTTC GAGTATGCTCACTCCGCTGTGGGCCATGCAAATCGGTACTCGCCTCGTTG TGTGTCTTGTTGCCGCGGAAAATTTTGGACGCAGCTGCTGCGGGGTTGGT TGATTGATTCCTACTGTAATACTGTTTGCAGGGACGACTAGGTTCCTTTG TATAGGTGTTCGTAAATGCCACGCTTCGCCGCCCCCTATTATCTCTCCGA CGCCAATCATCAACCCGGTTTGGTTTATCATGGCACCACTCGAGTTCTTT TCTTGACGGCCTACCGTTAGACAGCAGCGTAAGGAACCATACGCCTGCCC TTTTTCCCCGCCTTCCCCGTCTATGTGTGTATCACGCCCGAAGTACGGGA GTAGGGTCGGGAATGCGAGTCTGTCTAGTATCGTTTCCGCCATGTTCCAT CTGGCTGACCTCGTAAATGAAGGACCGACGGAAAGTTGACGGATCGCTGA AACGTCTTTTTTTTTTTTCGCAACCCCAACCAAGGAATCCAAGAAACTCC CGCAGAGCAAACCCACGCCCCATCATCCCTTGTCCCTCAGCACCGCAATC TAACCCCTCCCCGCCTCCGCCGACTTACGAACGCCTAACAGGATGAAGCG CATGGAAACGCAAGAAGCGGCCCGCGAATTGGGAGCTCGCGTGACGGGGT CCATCTCTCGGAAGACGGACCTGGTAGTGGTGGGGCTCAACCCCGGCGGC AAGCTGGAGAAGGCGCGGGAGCTCGGGGTGGAGGTGATGTCGGAGGAGGA GTGGTACCGGAGAATCGGCCTCCCTCCCGGCAGCGGTCGAGGCTAGCGCG GGGGGGGGGCGATGTTGACATTCACGTATGTGCAAGCGGGCGTTCTCGTG TGCCTTCGATTGTCTAGAGGTAGGATAGATTGGTAAGGAGCGTGCTCGCT GTTTGCAGTGTGAAGAGCTGGCTGGCTTTGGTCGAAGGGTGAGACCTTGG ATTTCTGCTCGTTTTTGCGCGACGCACACAATGAAGCTTGTGTAGCTGTG GTGCCTGCTCCGTACTCCCTACAAGAGCGTGCTCATGTGGGTAGGTAGGT GCCAACATCTATTCCGCAAAATGCCTGGGTTTTTTTTCCCACGGCGTGCT CCCGCTCGTTTTTCAACCTTTTTTTTTACCTGCTCCGGCATGACGATCGT GATTTTGAAGGGTGGTTCCATGATTTTGTAGGGTGGTGTGGTGCCATTTA AGGCCCATCAACACCACGGCGGTCCTAGAAGATGGTGGGGGGGAGTTATC TTGCCGTCGTGCGTACACTTGCTTGATTGAGTTGTCTCGAAATCAAGATT TGTTTGCGTCCCAAGGGTCAAACATCTTCTCAGCAGGCGTGTGATATTTT TGGTATCTACAGGAGAAGGTGAAGCGGCGTAGGAAGTGGGCGGGAAGTCG AAAAATCTTTAATCTACTTGTGGTGACTCAAGCCACGATCTAATTGTGGG GGTGAAACACGTGCGATGTTCACAAAAGATCATGATGATGTGAACAAAGT TGAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1673:554..5659+

>mRNA_Ecto-sp13_S_contig1673.4820.1 ID=mRNA_Ecto-sp13_S_contig1673.4820.1|Name=mRNA_Ecto-sp13_S_contig1673.4820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1673:554..5659+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAAGTAATCGCCGAGGGGTTCAACGGAGATTTCGAGGCGTTTTG
GGGAGCGCTCACAAGCAGGGCTTCGGACGCGTCCCAAGCGCTAGAGGCGG
CCCAACACACCCGAGACAGAGAAACCGCCGCCGTCGCCAACACCGCCGCT
GAACGACAAGAAGAAACCAGCGCCGCCGCCGCGGATGCTCCCGCCGCCGC
CGCCACTGCTGCAGCCGTCGACGACACCGGTCCGACTGAGCCCGCCGCCG
CAGAGGCGTTCCGGGGCGTCCAGGGCATGGGCCCAGCGATGCTCGCCTCC
CTGCTTCGCTTCGCGAAAGCAGATAACGGTAATCGGCCGGTGGTGGAGGC
GCTCGCGTCGGAGGTCCGATTCTCGGCACGGGCTCGTGGGCGTCATCGGG
GGGGGATGATTGGTGGTGGTAGTGGTGGCGATGCGGTCGTTGAAGGGGGG
GGGATGGGGTCCGCAGGCGGCGGCGCTTGGGTGGAGGGGAAGACTGTGGT
CTTCACCGGGACTTTGACGAGGATGAAGCGCATGGAAACGCAAGAAGCGG
CCCGCGAATTGGGAGCTCGCGTGACGGGGTCCATCTCTCGGAAGACGGAC
CTGGTAGTGGTGGGGCTCAACCCCGGCGGCAAGCTGGAGAAGGCGCGGGA
GCTCGGGGTGGAGGTGATGTCGGAGGAGGAGTGGTACCGGAGAATCGGCC
TCCCTCCCGGCAGCGGTCGAGGCTAG
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