mRNA_Ecto-sp13_S_contig1673.4820.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: D7G0N8_ECTSI (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0N8_ECTSI) HSP 1 Score: 335 bits (859), Expect = 8.580e-98 Identity = 198/285 (69.47%), Postives = 209/285 (73.33%), Query Frame = 3
Query: 471 SILEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGG---MIGGGSGGDAVVEGGGMGSAGGG-AWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIGLPP 1313
SILEGREGWGRLSARNVLDAVDRAKDGVSLGRFI+SLG+PLVGARMAEVIAE FNG+FEAFWGALT + V+ TGPTEPAAAEAF+G+QGMGPAMLASLLRFAKA+NGNRPVVEALASEVRFSARAR RH GG M+ DAVV AWVEGKTVVFTGTLTRMKR ETQEAARELGARVTGSISRKTD+VVVGLNPGGKLEKARELGVEV+SEEEWYRRIGLPP
Sbjct: 931 SILEGREGWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGEFEAFWGALTRAGLPTPPKV-----------------------------------------VNGTGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASEVRFSARARRRHAGGGEWMVAL----DAVVXXXXXXXXXXXXAWVEGKTVVFTGTLTRMKRTETQEAARELGARVTGSISRKTDMVVVGLNPGGKLEKARELGVEVVSEEEWYRRIGLPP 1170
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A6H5JUK0_9PHAE (DNA ligase (NAD(+)) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK0_9PHAE) HSP 1 Score: 251 bits (641), Expect = 1.260e-67 Identity = 157/212 (74.06%), Postives = 163/212 (76.89%), Query Frame = 3
Query: 492 GWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTR 1127
GWGRLSARNVLDAVDRAKDGVSLGRFI+SLG+PLVGARMAEVIAE FNGDFEAFWGALT RASDASQALEAAQHTRDRETAAVANTAAER XXXXX V+ GPTEPAAAEAF+G+QGMGPAMLASLLRFAKA+NGNRPVVEALAS VRFSARAR AWVEGKTVVFTGTLTR
Sbjct: 1015 GWGRLSARNVLDAVDRAKDGVSLGRFIYSLGVPLVGARMAEVIAEEFNGDFEAFWGALT-RASDASQALEAAQHTRDRETAAVANTAAERQETNAAAXXXXXVAAATFAAVNGNGPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASGVRFSARARRXXXXXXXXXXXXXXXXXXX--XXXXXXXAWVEGKTVVFTGTLTR 1223
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A6H5K6N5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N5_9PHAE) HSP 1 Score: 175 bits (443), Expect = 4.060e-48 Identity = 103/135 (76.30%), Postives = 108/135 (80.00%), Query Frame = 3
Query: 606 MAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGG 1010
MAEVIAE FNGDFEAFWGALT RASDASQALEAAQ TRDRETAA+ANTAAER V+ PTEPAAAEAF+G+QGMGPAMLASLLRFAKA+NGNRPVVEALASEVRFSARAR RHRGG
Sbjct: 1 MAEVIAEEFNGDFEAFWGALT-RASDASQALEAAQRTRDRETAAIANTAAERQVPNHAAADAAVAAATVAA-VNGNDPTEPAAAEAFQGIQGMGPAMLASLLRFAKAENGNRPVVEALASEVRFSARARRRHRGG 133
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A2D4V3S4_9RHOB (DNA ligase n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A2D4V3S4_9RHOB) HSP 1 Score: 114 bits (286), Expect = 9.540e-23 Identity = 96/278 (34.53%), Postives = 130/278 (46.76%), Query Frame = 3
Query: 477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTG-PTEPAAA-EAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
L+ REGWG SA N+ DA+D + + LGR IFSLGI VG +A +A + W AL + A++AA+ +R A A AER + P E AA + GV G+G + SL+ + A R ++ L +++ R A G+ V GKTVVFTGTL +M R E + A LGA+V+GS+S+KTD+VV G G K KARELGVE+M E+ W IG
Sbjct: 513 LKNREGWGEKSANNLFDAIDERRK-IPLGRVIFSLGIRHVGEVVANDLARHYLS-----WSALLT-------AVDAARPAMERYRQAEAAVEAERKAAAEEGRRARLKETRDAAWAQEPAVPQEARAAWDDLVGVDGIGHTVAVSLVT-SFAQEAERASIDRLVAQLEIEDAER------------------------PATEGSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKEAKARELGVELMDEDSWLALIG 752
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A2E2PD30_9RHOB (DNA ligase n=2 Tax=Rhodobacteraceae TaxID=31989 RepID=A0A2E2PD30_9RHOB) HSP 1 Score: 114 bits (285), Expect = 1.210e-22 Identity = 97/276 (35.14%), Postives = 126/276 (45.65%), Query Frame = 3
Query: 477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
L+ REGWG SAR + DA+D K + L RFIFSLGI VG A +A + G W ALT +A DA++ A D A TA R G AA + GV G+GPA+ ASL A A+ R +E LA ++ DA + V GKTVVFTGTL +M R E + A LGA+V GS+S KTD+++ G G K +KA ELG++ + E+ W IG
Sbjct: 494 LKNREGWGETSARKLFDAIDE-KRRIDLARFIFSLGIRHVGEVAARDLALHYLG-----WDALT-QALDAARPAALAHRAADE-----AETAERRVAQDEGRRARIAEVRAAAIAGVAPGDVAQAAWDDLIGVDGIGPALAASLSD-ALANPDERTAIEDLAQQLNIQPP----------------DAPAA---------DSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVAGSVSAKTDILIAGPGAGSKAKKAAELGIDTLDEDGWLALIG 731
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: UPI001C0A609E (NAD-dependent DNA ligase LigA n=1 Tax=Citreicella sp. C3M06 TaxID=2841564 RepID=UPI001C0A609E) HSP 1 Score: 112 bits (281), Expect = 3.890e-22 Identity = 95/278 (34.17%), Postives = 132/278 (47.48%), Query Frame = 3
Query: 477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQH-TRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAA-EAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
L REGWG SA N+ DA+D + + LGR +FSLG+ VG ++ +A + + A AL + + A + EA Q TR+R+ AA A+ D P E AA + G+ G+G + SL+ + R ++ LA+ + R A G+ V GKTVVFTGTL RM R E + A LGA+V+GS+S+KTD+V+ G G K EKARELGVE+M E+ W IG
Sbjct: 513 LRNREGWGEKSANNLFDAIDEKRK-IPLGRLLFSLGLRHVGEVVSNDLARHYL-SWSALINALDAARAAAVRYREAEQAVTRERQAAAAEGRRAK-----------LKETRDGCWAADPAIPAEARAAWDELIGIDGIGETVAVSLVT-SFGQPTERASIDRLAACLDIQDAER------------------------PASDGSPVAGKTVVFTGTLERMTRAEAKARAEALGAKVSGSVSKKTDIVIAGPGAGSKGEKARELGVEIMDEDAWLALIG 752
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A1H5SKK5_9RHOB (DNA ligase n=1 Tax=Jhaorihella thermophila TaxID=488547 RepID=A0A1H5SKK5_9RHOB) HSP 1 Score: 112 bits (281), Expect = 3.940e-22 Identity = 97/284 (34.15%), Postives = 126/284 (44.37%), Query Frame = 3
Query: 477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFW--------GALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
L+ REGWG SA N+ A+ RA+ + L R IF+LGI G A +A + G +EAF AL RA+D ++A E R+ +A A P AA E G+ G+GP +LA L A A+ R ++ L S + R A + V GKTVVFTGTL +M R E + A LGA+V GS+SRKTDLVV G G K KA ELGVE++ E+ W IG
Sbjct: 519 LKNREGWGEKSAENLFAAI-RARRRIPLNRLIFALGIRHAGEAAARDLAR-YYGTWEAFVHAIDTARPAALAHRAADEAEAAERIAAQREGRRPEIAKVRARAWEACAVP------------------PEAKAAWEELTGIDGIGP-VLALSLSDAFANPEERASIDRLVSHLEVEPVER------------------------PAAADSPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVAGSVSRKTDLVVAGPGAGSKARKAAELGVEIIDEDSWLEMIG 757
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: UPI00169EB2D2 (NAD-dependent DNA ligase LigA n=1 Tax=Salipiger sp. HF18 TaxID=2721557 RepID=UPI00169EB2D2) HSP 1 Score: 107 bits (268), Expect = 8.970e-22 Identity = 97/277 (35.02%), Postives = 128/277 (46.21%), Query Frame = 3
Query: 477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVR-FSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
L+ REGWG SA+N+ DA+D + + LGR IFSLGI VG +A +A + A W L A DA A AA+ R ETA A G AA E G+ G+G + SL+ + R V+ L +E+R A R + + G+ V GKTVVFTG L +M R E + A LGA+V+GS+S+KTD+VV G G K KARELG+E+M E+ W IG
Sbjct: 103 LKNREGWGEKSAQNLFDAIDERRT-IGLGRVIFSLGIRHVGEVVANDLARHY-----ASWDKLIE-AVDA--ARPAAERYRQAETAVEAERKTAAAEGRRARIKETRDAAWEAEPPVSAGAR--AAWEDLVGIDGIGQTVAVSLVT-SLGQTTERASVDRLIAELRTIEAPER---------------PLTD---------GSPVAGKTVVFTGALEKMTRAEAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALIG 343
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A258MUZ8_9HYPH (DNA ligase (NAD(+)) LigA (Fragment) n=1 Tax=Azorhizobium sp. 35-67-15 TaxID=1970320 RepID=A0A258MUZ8_9HYPH) HSP 1 Score: 107 bits (266), Expect = 9.930e-22 Identity = 96/289 (33.22%), Postives = 135/289 (46.71%), Query Frame = 3
Query: 477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFR-------------GVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
LE REGWGR SA+ + A++ + ++L RFIF+LGI VG A+ +A + G EA DA+ A E + AA A A++ + P EP A+ R + G+G + +++ F + + NR VVEAL EV +AV G+ V GKTVVFTG+L RM R E + A LGA+V GS+S KTD++V G G KLEKAR LGV+V++E+EW+ +G
Sbjct: 89 LENREGWGRTSAQKLFAAIEERR-AIALDRFIFALGIRHVGETNAKRLARHY-GAMEAL--------RDAALAAEMPEEME----AAAAPEASQA----------------------EVTPEEPGPAKVRRRKPQGNDAWAEMINIDGIGAVVAEAVVDFFREPH-NREVVEALLKEVSPQPL----------------EAVST---------GSPVSGKTVVFTGSLERMTREEAKAMAERLGAKVAGSVSAKTDILVAGPGAGSKLEKARALGVQVITEDEWFDLVG 315
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Match: A0A7Y7DPY9_9RHOB (DNA ligase n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A7Y7DPY9_9RHOB) HSP 1 Score: 110 bits (275), Expect = 1.060e-21 Identity = 96/276 (34.78%), Postives = 124/276 (44.93%), Query Frame = 3
Query: 477 LEGREGWGRLSARNVLDAVDRAKDGVSLGRFIFSLGIPLVGARMAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAERXXXXXXXXXXXXXXXXXXXXVDDTGPTEPAAAEAFRGVQGMGPAMLASLLRFAKADNGNRPVVEALASEVRFSARARGRHRGGMIGGGSGGDAVVEGGGMGSAGGGAWVEGKTVVFTGTLTRMKRMETQEAARELGARVTGSISRKTDLVVVGLNPGGKLEKARELGVEVMSEEEWYRRIG 1304
L+ REGWG SA+N+ DA+D + + LGR IFSLGI VG +A +A + A W L A DA A AA+ R ETA A G AA E G+ G+G + SL+ + R V+ L +E+R H G V GKTVVFTG L +M R E + A LGA+V+GS+S+KTD+VV G G K KARELG+E+M E+ W IG
Sbjct: 312 LKNREGWGEKSAQNLFDAIDERRT-IGLGRVIFSLGIRHVGEVVANDLARHY-----ASWDKLIE-AVDA--ARPAAERYRQAETAVEAERKTAAAEGRRARIKETRDAAWEAEPPVSAGAR--AAWEDLVGIDGIGQTVAVSLVT-SLGQTTERASVDRLIAELRTIEAPERPHTDGSP-----------------------VAGKTVVFTGALEKMTRAEAKARAEALGAKVSGSVSKKTDIVVAGPGAGSKEAKARELGIELMDEDAWLALIG 552 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1673.4820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1673.4820.1 >prot_Ecto-sp13_S_contig1673.4820.1 ID=prot_Ecto-sp13_S_contig1673.4820.1|Name=mRNA_Ecto-sp13_S_contig1673.4820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp MAEVIAEGFNGDFEAFWGALTSRASDASQALEAAQHTRDRETAAVANTAAback to top mRNA from alignment at Ecto-sp13_S_contig1673:554..5659+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1673.4820.1 ID=mRNA_Ecto-sp13_S_contig1673.4820.1|Name=mRNA_Ecto-sp13_S_contig1673.4820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5106bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1673:554..5659+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1673:554..5659+ >mRNA_Ecto-sp13_S_contig1673.4820.1 ID=mRNA_Ecto-sp13_S_contig1673.4820.1|Name=mRNA_Ecto-sp13_S_contig1673.4820.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1673:554..5659+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |