mRNA_Ecto-sp13_S_contig16728.4819.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16728.4819.1
Unique NamemRNA_Ecto-sp13_S_contig16728.4819.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE)

HSP 1 Score: 521 bits (1343), Expect = 1.340e-177
Identity = 261/297 (87.88%), Postives = 277/297 (93.27%), Query Frame = 2
Query:   59 TLVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQLGEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCADAKCGPSAVVPRPIAGASGWAQEIRAAYPPRSTREPETGRAAHLEVESDTGMAYGGSNHAGAVTQASESMLGHGENVVEETDEDAIAAADWLDVSHALLLETERAASGKSR 949
            TLVFEKAAKGDFSG+VERIDRCVEVFE FPGVCRFFMGSHVAHIMVTALAAIGNSR+RGMYDRLRRAYNSTRFPDS+PIPPFEEWQGVSSFC+TFYCRTMELLIVGDEMGG+FAAGQ   ADHQNEGDEGEEKE++G D+GAFWGI DNDIP+GPFLLSAGGGGAEFDLL ST  A MGSF ADCA AKCGPSAVVPRPIAGA GWAQE+R+AYP +STREPETGR AHLEVESDTGMAYG SN AGAVTQ SESMLG+GENVVEET+EDAIAAADWLDVSHALL+ETE  ASG+SR
Sbjct:  379 TLVFEKAAKGDFSGAVERIDRCVEVFETFPGVCRFFMGSHVAHIMVTALAAIGNSRTRGMYDRLRRAYNSTRFPDSSPIPPFEEWQGVSSFCDTFYCRTMELLIVGDEMGGMFAAGQNARADHQNEGDEGEEKEKVGHDQGAFWGIVDNDIPVGPFLLSAGGGGAEFDLLRSTRNARMGSFPADCAGAKCGPSAVVPRPIAGAPGWAQEVRSAYPLKSTREPETGRGAHLEVESDTGMAYGRSNDAGAVTQTSESMLGNGENVVEETEEDAIAAADWLDVSHALLVETELRASGQSR 675          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: D7FH82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 1.440e-122
Identity = 183/209 (87.56%), Postives = 190/209 (90.91%), Query Frame = 2
Query:   59 TLVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQLGEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCADAKCGPSAVVPRPIAGASGWAQE 685
            TLVFEKAAKGDF+G+VERIDRCVEVFEGFPGVCRFFMGSHVAHIM+TALA IG+SR+RGMYDRLRRAYNSTR PDSTPIPPFEEWQGVSSFC+TFYCRTMELLIVGDEMGGIFAAGQ   ADHQNEGDEGEEKE  GEDEG  W I DN +PIGPFL SAGGGGAE DLLPSTC ADMGSFLADCADAK GPSAVVPR I GASGW QE
Sbjct:  299 TLVFEKAAKGDFTGAVERIDRCVEVFEGFPGVCRFFMGSHVAHIMMTALAVIGDSRARGMYDRLRRAYNSTRLPDSTPIPPFEEWQGVSSFCDTFYCRTMELLIVGDEMGGIFAAGQNARADHQNEGDEGEEKEHFGEDEGTAWSIDDNGVPIGPFLASAGGGGAEVDLLPSTCNADMGSFLADCADAKFGPSAVVPRSITGASGWVQE 507          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: D8LU09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU09_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.600e-37
Identity = 111/291 (38.14%), Postives = 148/291 (50.86%), Query Frame = 2
Query:   56 RTLVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQLGEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCADAKCGPSAVVPRPIAGASGWAQEIRAAYPPRSTREPETGRAAHLEVESDTGMAYGGSNHAGAVTQASESM-----LGHGENVVEETDEDAIAAADWLDVSHALL 913
            RTLVFEKAAKGD   ++ERI RCVEVFE +PG+CR  +  H AHIM+  LAAIG+S +R MYDRLR +YNS R   S P+PP EEWQGV +FC+ FYCR ME L+  D M    A    G+      G +G   ++L   +     IG   +P+ P   S GGGG+             GS LA         S ++P                 PP S+         HL+ E  +       +    +T A ES+     L  G  ++E+ ++ +I A DWLD +HA+L
Sbjct:  305 RTLVFEKAAKGDRRATLERIGRCVEVFELYPGMCRCTISHHKAHIMLVCLAAIGDSSARAMYDRLRGSYNSFRPAGSLPVPPLEEWQGVGAFCDDFYCRAMEGLVASDLMKAFSAPCVDGF--DVCVGAKGTGSDKLSTCDNPEENIGT--VPVRP---SEGGGGS-------------GSTLA---------STMIP---------------VAPPASSHHAW----CHLKAEFHSDQIE---SSVALMTMADESLPRLPQLSEGSGLLEDNEDRSIFADDWLDATHAML 544          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 8.720e-35
Identity = 105/292 (35.96%), Postives = 142/292 (48.63%), Query Frame = 2
Query:   59 TLVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQLGEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCADAKCGPSAVVPRPIAGASGWAQEIRAAYPPRSTREPETGRAA--HLEVESDTGMAYGGSNHAGAVTQASESM-----LGHGENVVEETDEDAIAAADWLDVSHALL 913
            TLVFEKAAKGD   ++ERI RCVEVFE +PG+CR  +  H AH+M+  LAAIG+S +R MYDRLR +YNS R   S P+PP+EEWQG+ +FC+ FYCR ME L+  D M    A    G+                             DI      +   G G++     STC         D  +   G   V P  + G SG     +   P      P +   A  H++ E  +        H   +T A ES+     L  G  ++E+ ++ +I A DWLDV+HA+L
Sbjct:  424 TLVFEKAAKGDRQATLERIGRCVEVFELYPGMCRCTIAHHKAHVMLVCLAAIGDSSARAMYDRLRGSYNSFRPSVSRPVPPWEEWQGLGAFCDDFYCRAMEGLVASDLMKAFSAPSLDGF-----------------------------DI-----CVETQGTGSDKS---STC---------DNPEKIIGAVPVRPSEVGGGSGPTLASKTMIP---VAPPASSHHAWCHMKTEIHSDRIENSLAH---MTMADESLPRLPQLSAGGGLLEDNEDRSIFAEDWLDVTHAML 663          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 2.240e-30
Identity = 103/301 (34.22%), Postives = 142/301 (47.18%), Query Frame = 2
Query:   62 LVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFM-GSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQLGEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCADAKCGPSAVVPRPIAGASGWAQEIRAAYPPRSTREPETGRA---AHLEV-ESDTGMAYG--GSNHAGAVTQASESMLGHGE-----NVVEETDEDAIAAADWLDVSHALLLETER 928
            L  +KA KGD  G++ER+  CVEVFE +PGVCR  M   HV+H ++ ALAAI +SR+R +YDRLR  YN +R  DS P PP EEW+G+S+FC+ F CR  E +I    +               ++G + +E      DE     I    +P G  L +A                  G+ +    DA C       +P++  S W    +    P     P  G +   +H+   E D G   G  G   +G V    E  L   E      V EET +D I  ADWLDV+HA+L E ++
Sbjct:  414 LALQKAGKGDAGGALERLRHCVEVFERYPGVCRCMMLWCHVSHSILGALAAINDSRARELYDRLRNVYNPSRSSDSLPAPPLEEWRGMSAFCDDFQCRCFEGIIASQALSVFSTPTLCASNCAGSQGAQCKEDYLQAADEQHHTSI----VPAGVILENA-----------------TGTMM----DAPCSNG---DKPMSSTSSWELNQK----PAPQMSPPVGPSLSTSHVHCCEPDRGAVEGCGGGGVSGVVAPVPEMSLRWPELRQVDGVSEETGDDTIVTADWLDVTHAMLGEIDQ 682          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: D8LU28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU28_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 7.820e-29
Identity = 103/309 (33.33%), Postives = 148/309 (47.90%), Query Frame = 2
Query:   59 TLVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQLGEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCADAKCGPSAVVPRPIAGASGWAQEIRAAYPPRSTREPETGRA---AHLEV------ESDTGMAY------GGSNHAGAVTQASE-----SMLGHGENVVEETDEDAIAAADWLDVSHALLLETE 925
            TL ++KAA GD  G++ER  +CV+VFE +PGVCR     H+AH ++ +LAAI +SR+ G+Y+RLR  YN +R   S P PP EEW+G+S+FC+ F CR  E +I       +F+A     ++     +E EE      DE                ++S G          +T +   GS +    DA   P     +P+A    W   +     P     P  G +   +HL        ESDT +        GG   +G V Q  +      +LG  +   EE  +D IAAADWLDV+HA+L  T+
Sbjct:  281 TLAYQKAANGDAGGALERFGQCVDVFERYPGVCRCMFWCHIAHGILGSLAAIDDSRAGGLYNRLRDVYNPSRPSSSLPAPPLEEWRGISAFCDDFQCRLTEGMIASQAFS-VFSAPTHCTSNCTGSQNECEEASLQFVDE-----------EQNSSMVSVG----------ATPEVATGSIM----DA---PRTNGDKPMASNYSWELNLE----PTPQTSPTVGPSLSPSHLHCKPVRGGESDTDVLNSAVVECGGGVLSGLVGQVPDVSLTSPLLGDIDGAREEIWDDTIAAADWLDVTHAMLDATD 556          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: D8LU06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU06_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.230e-28
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 2
Query:   62 LVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMEL 364
            L+F KAA+GD   ++ERI RCVEV E +PG+CR  +G H+AHI + +LAA+G SR++ MYDRLR +YNS R   S P+PP EEW  V +FC+  +CR M+L
Sbjct:  119 LIFTKAAQGDLHAALERIGRCVEVCERYPGLCRSTVGCHLAHIALVSLAAVGGSRAQTMYDRLRGSYNSCRPAGSRPVPPLEEWDRVDAFCDDSFCRAMDL 219          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.080e-28
Identity = 56/103 (54.37%), Postives = 76/103 (73.79%), Query Frame = 2
Query:   59 TLVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELL 367
            TL F K   GD  G++ER++RCVEVFEGFPG+ RF MG+H+AH+M++  A++G+SR  G+Y+RLR A N TR   S   PP EEWQG+S+FC+   CR++E L
Sbjct:  373 TLFFNKTVSGDNKGALERLERCVEVFEGFPGLTRFAMGNHMAHVMLSVAASVGDSRDGGLYNRLRNACNLTRPQGSLAFPPLEEWQGISAFCDNVPCRSIEAL 475          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 5.450e-28
Identity = 104/302 (34.44%), Postives = 146/302 (48.34%), Query Frame = 2
Query:   62 LVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFM-GSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQLGEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCADAKCGPSAVVPRPIAGASGWAQEIRAAY-------PPRSTRE-----PETGRAAHLEVESDTGMAYGGSNHAGAVTQASESMLGHGE-----NVVEETDEDAIAAADWLDVSHALL 913
            L F+KA KGD  G++ER+  CVE FE +PGVCR  M   H +H ++ ALAAI +SR+R +Y+RLR  YN +R     P PP EEW G SSFC+ F CR  E  I+      +F A     +++ ++     ++    ED   +  + D +      ++SAG       ++P      +GS +    DA C       +P+A  S W      A        P  ST       P+TG  +  ++ S      GG   AG V    +  L   E      V EET +D IAAADWLDV+HA+L
Sbjct:  341 LAFQKAGKGDAGGALERLGHCVEAFERYPGVCRCMMLWCHASHSILGALAAIKSSRARELYNRLRDVYNPSRPASFLPAPPLEEWHGTSSFCDDFQCRCFE-GIIASRARNLFPAPSDCTSNNTDQ-----QQTNCTED---YLEVVDEEHDGS--IISAG-------VIPEKA---IGSIM----DAPCSNG---DKPMASTSLWELNQEPAPQMGPPVGPSLSTSHVHCCGPDTGGGSGTDIYSGAVEGCGGGVLAGLVAPVPDMSLRLPELTQVDGVPEETGDDTIAAADWLDVTHAML 614          
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.280e-27
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 2
Query:   59 TLVFEKAAKGDFSGSVERIDRCVEVFEGFPGVCRFFMGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQGVSSFCNTFYCRTMELLIVGDEM 385
            TLVF K AKGD + ++ER+ RCV VFE +PG+C   MG H AHI++  LAAI + R+R MYD LR  YNS R   S P+PP EEW GV  FC+  YCR +E L+  + +
Sbjct:  300 TLVFVKGAKGDLNAALERVGRCVAVFERYPGLCSGTMGYHNAHIVLVCLAAISDPRARAMYDSLRATYNSFRPAGSLPVPPLEEWHGVDVFCDDCYCRAIEQLVASEHI 408          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16728.4819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JZG3_9PHAE1.340e-17787.88Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FH82_ECTSI1.440e-12287.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU09_ECTSI2.600e-3738.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE8.720e-3535.96Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JBJ1_9PHAE2.240e-3034.22Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU28_ECTSI7.820e-2933.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU06_ECTSI1.230e-2854.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG6_9PHAE3.080e-2854.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU24_ECTSI5.450e-2834.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU16_ECTSI2.280e-2752.29Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16728contigEcto-sp13_S_contig16728:2..3020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1356
Hectar predicted targeting categoryother localisation
Exons3
Cds size792
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.481983-UTR-Ecto-sp13_S_contig16728:1..1671681462877.481983-UTR-Ecto-sp13_S_contig16728:1..167Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16728 2..167 +
1681462877.5222757-UTR-Ecto-sp13_S_contig16728:2622..30201681462877.5222757-UTR-Ecto-sp13_S_contig16728:2622..3020Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16728 2623..3020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.491546-CDS-Ecto-sp13_S_contig16728:167..1721681462877.491546-CDS-Ecto-sp13_S_contig16728:167..172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16728 168..172 +
1681462877.5039718-CDS-Ecto-sp13_S_contig16728:1583..17631681462877.5039718-CDS-Ecto-sp13_S_contig16728:1583..1763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16728 1584..1763 +
1681462877.5130615-CDS-Ecto-sp13_S_contig16728:2015..26221681462877.5130615-CDS-Ecto-sp13_S_contig16728:2015..2622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16728 2016..2622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16728.4819.1prot_Ecto-sp13_S_contig16728.4819.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16728 168..2622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16728.4819.1

>prot_Ecto-sp13_S_contig16728.4819.1 ID=prot_Ecto-sp13_S_contig16728.4819.1|Name=mRNA_Ecto-sp13_S_contig16728.4819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
MGSHVAHIMVTALAAIGNSRSRGMYDRLRRAYNSTRFPDSTPIPPFEEWQ
GVSSFCNTFYCRTMELLIVGDEMGGIFAAGQKGYADHQNEGDEGEEKEQL
GEDEGAFWGIGDNDIPIGPFLLSAGGGGAEFDLLPSTCKADMGSFLADCA
DAKCGPSAVVPRPIAGASGWAQEIRAAYPPRSTREPETGRAAHLEVESDT
GMAYGGSNHAGAVTQASESMLGHGENVVEETDEDAIAAADWLDVSHALLL
ETERAASGKSRQS*
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mRNA from alignment at Ecto-sp13_S_contig16728:2..3020+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16728.4819.1 ID=mRNA_Ecto-sp13_S_contig16728.4819.1|Name=mRNA_Ecto-sp13_S_contig16728.4819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3019bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16728:2..3020+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTATACCTTTTTCTAAACGACGAATGACTCCCAACCTAGTCTGCCCAAC GCACCAGGACCCTTGTTTTCGAGAAGGCGGCGAAAGGAGACTTCAGCGGA TCCGTCGAGAGAATCGACCGCTGCGTGGAAGTTTTCGAGGGGTTCCCAGG GGTCTGTCGATTCTTCATGGGGTGAGTCGCACAGGGGTGTTGTGGCCCCG AATAAATGTTTGAAATTTCTTGCAAACAGCACGAGCCAAATATAAAGGCT ACGCAAGGTTTCTGGCCGCTCCCTGTGTCCCCGGGGCTCCGCGATGGTGT TTTTTTCCAAACCATATATATTTTTCTCACAGGTGAAACTGCTAGAAGAA AAAGAAAACCCGCCCACGGCGACTGCCGTAAAATGTCAAATATCCCCTCT GGCGCTTAGCCCCCAGAAGACGCAAACCTCTACATCTTTTTGAAGAAATC ATGGTAGCTCGAACAACGAAACGTGTGGCTTATCAATTACGGCCTTGTAG CACATGATCGAGGTGCTACAAGTTTTACGATTTGAGCACAATCCTCCTGC CGAGATGATTGGTGAACCAGGGCAGCACAGTGTGCTTCTCTCGAAGGCAG CTACAGCACGCCGTAGGCAACCACACTGCTCGAAACCGGCAGAGCCTACC GATATGGTGTGTGAGTGGCGTCGCATGACTTCACAGCAGCAGTAGACAAC AAGAAACGATTCTAGAGGTGTCGTCGTGAACTGTATGTAGTTGCACACAG CAGCTCGAAATTGTGGCCAAAATGCCGGATCTTGTGGGTCCTTTGACGAG CTGCCGCCGTTGTCCACGTGTGTATGTGTGCCTTACCAACAAACGGATTA GACGCGAATGTAGGTGGTTCACCGGGTGGTCTCCTGCTGGGAAAACATGT AGAGGTTTTGGATTTGGCACAGTTGGACTTTTCGATTTACGTCGCAAAAC GTTACGAATCATGCGCTTTTTCGGTCCGTTTTTTCGTCCGCCCGCTAAAA AGCTGCTTTTGTGCAAATTCCCTCGTCTGAACCCAAGCTGTTTCATGTTG ATTCTGCGAATGCGAAACGCCATCTCCTCTTAACAACGCTTTTTTTATGA GGAACCTTGCGTAACCTTGAGGAGCTCTCGTTTGAGGTAACCGTCGTGGC ATCATACCGTTACGAGGAAACCAACAGAAAATATGAGTGCGGTCCACATT GTTCCAGTTTCCAAGTTTTTTTTTAATCACTTTAATCTTAACAGCAAGTG TAAACCCTTACACTCGTGAGGGCCAAAGTTCTCGTGGTGGGGAGCTGTCG CAACGGGCCATTCCGCGAAACAACTGCTTGACCATAGGCTCGATACCGCA AGTTTTTGCATGGCAGCCAGGTACGCTGCTTGGTAGGCAAAACAAAAGTC TGGCAATGGCAAAGTCTTCGAGGATTGTGAGGTCCATCTCGGGTCTGTAC GTCAATGGTGGTGCGCATGTCGGAGGCACATTTATCGCCGGCTTGAGGAA AACACGACGAAAGACTTACCGCGCTCGGTTCTGATTGCTGAGAGTAATCA CCCCCCTCCTCCGCCTAAAATGCATCGGAAAGGTCGCACGTGGCGCACAT CATGGTGACTGCTCTGGCGGCCATTGGAAACTCCAGATCTCGAGGGATGT ACGACAGGTTACGGCGCGCGTACAACTCCACTCGCTTTCCTGATTCGACG CCCATACCCCCGTTTGAAGAATGGCAGGGGGTTTCTTCTTTCTGCAACAC TTTCTACTGCAGGTTTGTCAACCACCAGCGTGTCGGAGGTAGTCAATGAC ATAAGACTTAAGGGGGTGCATTTTCGATTGCCGCAGAGTTTTGCCGCACC AGCAAAGAGTATGACGAACTGCGACAAGCGTTTGCTCGCTTTTCGACAGA GGCAGGAAGTATCTTTCCAGGTTGTATGTGTGTTTCACCGATGGCGTTGC CTACCGAAGAGTTCAAGTCGGCACGTTTTCTCTCTCCCCAACCATGTCGT CTGTGGCTTCGCAGGACGATGGAGCTCCTCATTGTGGGTGACGAGATGGG GGGCATTTTCGCGGCCGGACAAAAAGGCTATGCCGACCACCAGAATGAAG GCGATGAAGGCGAGGAGAAGGAGCAACTCGGTGAAGACGAGGGAGCGTTT TGGGGCATTGGCGACAATGACATACCCATCGGTCCATTCCTTCTGTCGGC CGGTGGCGGCGGGGCCGAGTTCGACCTGCTGCCTAGCACGTGCAAGGCTG ATATGGGCTCTTTCCTGGCGGATTGCGCAGACGCTAAGTGTGGCCCTTCA GCTGTGGTACCAAGACCGATTGCAGGCGCGTCGGGCTGGGCACAAGAGAT ACGTGCAGCGTATCCGCCCAGGTCCACCCGTGAACCGGAGACCGGTCGCG CAGCCCATCTTGAAGTCGAAAGCGACACGGGAATGGCGTACGGTGGGAGC AACCATGCGGGCGCGGTCACCCAGGCATCGGAATCAATGTTGGGCCACGG GGAAAACGTGGTGGAAGAGACGGATGAAGACGCTATTGCCGCCGCAGACT GGCTGGATGTCTCCCATGCCCTTCTACTTGAAACAGAACGAGCAGCTAGC GGGAAGTCACGACAATCGTGATCAGACTTGAAATGTGATTCTATTGCTCT CGTCCCTTGTTCTTACGTGTCGCCTTTTTTCATTGCAAGGGTATTTTTCG AGACATGATAGGTGCTTACGTTCTTGGTCTGGACATTTGATGCCCCGCCG CCCGCCCACTCGGAACAGTTGTGATGCGTTAGTACTCTGTTCGAAAACCC TACACTGTATATCGGTCGTAGTTGGTCACCGGGGTTGGGTCGGTTCGGGA ATCTTCAGTAGGGTTAGTCGAGCGGGATTGTATTCAGGGAGCGAGCGAAA TAGATCGAAGTCGTACCAATAGCGGATAAAGGTGGATGGACCCGGGAACA TCCGGTCACGACGTCAAGAATAATCGGTGGTTCGCAGTGTACTTGTAGAG AAGTCGAGACTCGAAGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16728:2..3020+

>mRNA_Ecto-sp13_S_contig16728.4819.1 ID=mRNA_Ecto-sp13_S_contig16728.4819.1|Name=mRNA_Ecto-sp13_S_contig16728.4819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16728:2..3020+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGTCGCACGTGGCGCACATCATGGTGACTGCTCTGGCGGCCATTGG
AAACTCCAGATCTCGAGGGATGTACGACAGGTTACGGCGCGCGTACAACT
CCACTCGCTTTCCTGATTCGACGCCCATACCCCCGTTTGAAGAATGGCAG
GGGGTTTCTTCTTTCTGCAACACTTTCTACTGCAGGACGATGGAGCTCCT
CATTGTGGGTGACGAGATGGGGGGCATTTTCGCGGCCGGACAAAAAGGCT
ATGCCGACCACCAGAATGAAGGCGATGAAGGCGAGGAGAAGGAGCAACTC
GGTGAAGACGAGGGAGCGTTTTGGGGCATTGGCGACAATGACATACCCAT
CGGTCCATTCCTTCTGTCGGCCGGTGGCGGCGGGGCCGAGTTCGACCTGC
TGCCTAGCACGTGCAAGGCTGATATGGGCTCTTTCCTGGCGGATTGCGCA
GACGCTAAGTGTGGCCCTTCAGCTGTGGTACCAAGACCGATTGCAGGCGC
GTCGGGCTGGGCACAAGAGATACGTGCAGCGTATCCGCCCAGGTCCACCC
GTGAACCGGAGACCGGTCGCGCAGCCCATCTTGAAGTCGAAAGCGACACG
GGAATGGCGTACGGTGGGAGCAACCATGCGGGCGCGGTCACCCAGGCATC
GGAATCAATGTTGGGCCACGGGGAAAACGTGGTGGAAGAGACGGATGAAG
ACGCTATTGCCGCCGCAGACTGGCTGGATGTCTCCCATGCCCTTCTACTT
GAAACAGAACGAGCAGCTAGCGGGAAGTCACGACAATCGTGA
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