mRNA_Ecto-sp13_S_contig16722.4815.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16722.4815.1
Unique NamemRNA_Ecto-sp13_S_contig16722.4815.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16722.4815.1 vs. uniprot
Match: D8LM08_ECTSI (SPX domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM08_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.980e-11
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    4 SIPTSISQLSQLCILSLRGNNLKGDIIPELGCLTA 108
            SIP SISQLSQLCILSLRGNNLKGDIIPELGCLTA
Sbjct:  766 SIPKSISQLSQLCILSLRGNNLKGDIIPELGCLTA 800
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16722.4815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM08_ECTSI1.980e-1197.14SPX domain-containing protein (Fragment) n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16722contigEcto-sp13_S_contig16722:316..2188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score70.5
Seed ortholog evalue6.2e-10
Seed eggNOG ortholog2880.D8LM08
Preferred namePHO91
Model size363
KEGG rclassRC00210,RC00700,RC02868
KEGG koko:K01694,ko:K14430,ko:K20183
KEGG TC2.A.47.2
KEGG ReactionR02722
KEGG Pathwayko00260,ko00400,ko01100,ko01110,ko01130,ko01230,ko04138,map00260,map00400,map01100,map01110,map01130,map01230,map04138
KEGG ModuleM00023
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006082,GO:0006793,GO:0006797,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009987,GO:0010966,GO:0015075,GO:0015169,GO:0015291,GO:0015318,GO:0015605,GO:0015698,GO:0015711,GO:0015748,GO:0015794,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0032879,GO:0034220,GO:0034762,GO:0034765,GO:0035435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043436,GO:0044070,GO:0044232,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051179,GO:0051234,GO:0055085,GO:0065007,GO:0071702,GO:0071704,GO:0071944,GO:0097080,GO:0098588,GO:0098656,GO:0098660,GO:0098661,GO:0098805,GO:0098852,GO:1901264,GO:1901505,GO:1903795,GO:1903959,GO:1990816,GO:2000185
Exons4
EggNOG free text desc.succinate transmembrane transporter activity
EggNOG OGsCOG0471@1,KOG1281@2759
EC4.2.1.20
Cds size363
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.2374845-CDS-Ecto-sp13_S_contig16722:315..3881681462877.2374845-CDS-Ecto-sp13_S_contig16722:315..388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16722 316..388 +
1681462877.2716346-CDS-Ecto-sp13_S_contig16722:989..11331681462877.2716346-CDS-Ecto-sp13_S_contig16722:989..1133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16722 990..1133 +
1681462877.2802885-CDS-Ecto-sp13_S_contig16722:1576..16481681462877.2802885-CDS-Ecto-sp13_S_contig16722:1576..1648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16722 1577..1648 +
1681462877.2895045-CDS-Ecto-sp13_S_contig16722:2114..21881681462877.2895045-CDS-Ecto-sp13_S_contig16722:2114..2188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16722 2115..2188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16722.4815.1prot_Ecto-sp13_S_contig16722.4815.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16722 316..2188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16722.4815.1

>prot_Ecto-sp13_S_contig16722.4815.1 ID=prot_Ecto-sp13_S_contig16722.4815.1|Name=mRNA_Ecto-sp13_S_contig16722.4815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
GSIPTSISQLSQLCILSLRGNNLKGDIIPELGCLTALQTLSLRDNHFSGV
IPPELGQLTALRHLFMNNNILRGPIPEELSQLSQLEQLFLSDNELDGKIP
ESFGQLINLEELVLSGNQFTG
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mRNA from alignment at Ecto-sp13_S_contig16722:316..2188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16722.4815.1 ID=mRNA_Ecto-sp13_S_contig16722.4815.1|Name=mRNA_Ecto-sp13_S_contig16722.4815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16722:316..2188+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCGATCCCCACGTCGATCAGCCAGCTGTCGCAGCTCTGTATCCTCAG
CCTTCGAGGGAACAACTTGAAAGGTGAGCACGTGGATGTGTTTTTTTTTT
CCAAGTGTTGTTCTGGAAAGTCTCTCTTGTCGATTTCATGCTTGCGAGCA
TTCGTGCCCTCAAATTGGGTGAAGTTTGCTTGAATTTTGTCTCTTCTCGT
GAGTCTCGGCTCTTTCTGTCCACACACTCACGTGTACATCGCAATTCACA
CCAAATTTACCCGCGCGTTGTTATGTAATAGCTGCTCAAGCCACATGTTT
GCCTGGTAGTTTTCGTGTTATCGGTTTCAGATTGTTTGCACGGTTTTGCG
ACATCTCGTTGCATCGGCTTTGTGTAGTCCGCACGACACCAAACCACAAC
GTTTTGTTTTCTGTGAAGAGACGATGGCACGATACGCAGCACGTGGTCAC
CAACTGCTGTCGTGTAGTTGGTGCTGCTATCCCGCAGGGAAATGGCCACA
GCAGGCCTCCCACCTCTTTTGTCCCCAGCGGCTCTCCTACGATCACTCTT
GCACACCGACCATCACGGCAACGTACCACTCGACCAAGGTGTGCTTCAAG
TGCGGAAAGCTTCCCCTCCCCCAAGCATATCACGACGTTGTCGTGTTGGC
ATTGGTCGTATCATCGTATCGCAGGAGACATCATTCCAGAGCTGGGCTGT
CTGACAGCGCTGCAGACCCTAAGCTTGCGGGACAACCACTTCAGCGGCGT
CATTCCGCCCGAGTTGGGACAGCTCACGGCCCTGAGGCATCTCTTCATGA
ACAACAACATTCTCAGAGGTGTGGATATACAAAGGGGGGGGGGGGATCAT
TCTTTGATGCTTGCTGCCTTTTAGGCCTTGACAGACGGCAAACGGCACAC
CAAAGTCGAGCCGACTTTTTGCCGTTGTTGTTTTTCTTTGGCCATGGTAT
AGGCCGGGGTGAATGGTATTCCGTTGGCTATCGTAGACGAGGGTTGGGGT
TTTTGGGTAGAGCAGCAACACCGAACGTCCCCCATCCACTGCGTGACGCT
AGATACTCTCCCGGTGTTGTGCACTTCATGAAGATGTGCATCCCGTGAAC
AACAGGAATATTTTTTATGGAATGATGCTTTTTTTGTGGTACGCACTGCT
TCGAAACGGCGAGAGACCACCGGCAGGTGGCGCTTGTTTTGTCAGACGGA
GTTACGAAGAATGAATGACACAAGCAACAATTACGTGTCTCGCCTGACTG
ACTCTCACCAGGGCCAATTCCCGAGGAGCTGTCGCAGCTGTCGCAGCTGG
AGCAACTCTTTCTTTCGGACAACGAGCTGGACGGTGAGAGAGCTAGAATC
AGCAACAGCAATACGACACTGCCTGCTGGCGTTACACGACGAAGGCCAAT
GCAATGGGGTGTGGTGGTGACCGGGCATATGGCGCCTGGGACAAGGGGAC
GCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAATCCTTGCTGTGTGTTGT
GTGCGACTCTTTTGTATCCGCTGAATGTCCGTGTGCGGTATATGCCTAGC
TGTAGAGGAAAGTTTTTTCTTTCGTGCCACTCTTGTTTCTCCAAAACCGT
AGTTCCTGGCCCGCACAAACGCTTTCTCGCTCGTTCTCTGGCATTTGTGT
CTCCTCCTCTCATCAACTCCGATCACTACGCTCGTAGAGAGCATTATTAA
TGTGCGCAGTACATACAGCACCCATCACGTTTTCAACACTCGCGATGTTT
GACCGCCCCTGAACGGTTTTGGCTGCTTCCTTACCTGTGGCCCCCGCAGG
CAAGATTCCGGAATCGTTCGGCCAACTCATAAACCTCGAGGAGCTGGTGC
TAAGCGGCAATCAATTTACCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16722:316..2188+

>mRNA_Ecto-sp13_S_contig16722.4815.1 ID=mRNA_Ecto-sp13_S_contig16722.4815.1|Name=mRNA_Ecto-sp13_S_contig16722.4815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16722:316..2188+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCGATCCCCACGTCGATCAGCCAGCTGTCGCAGCTCTGTATCCTCAG
CCTTCGAGGGAACAACTTGAAAGGAGACATCATTCCAGAGCTGGGCTGTC
TGACAGCGCTGCAGACCCTAAGCTTGCGGGACAACCACTTCAGCGGCGTC
ATTCCGCCCGAGTTGGGACAGCTCACGGCCCTGAGGCATCTCTTCATGAA
CAACAACATTCTCAGAGGGCCAATTCCCGAGGAGCTGTCGCAGCTGTCGC
AGCTGGAGCAACTCTTTCTTTCGGACAACGAGCTGGACGGCAAGATTCCG
GAATCGTTCGGCCAACTCATAAACCTCGAGGAGCTGGTGCTAAGCGGCAA
TCAATTTACCGGT
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