prot_Ecto-sp13_S_contig16722.4815.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16722.4815.1
Unique Nameprot_Ecto-sp13_S_contig16722.4815.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length121
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16722.4815.1 vs. uniprot
Match: D8LM08_ECTSI (SPX domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM08_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.980e-11
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0 
Query:    2 SIPTSISQLSQLCILSLRGNNLKGDIIPELGCLTA 36
            SIP SISQLSQLCILSLRGNNLKGDIIPELGCLTA
Sbjct:  766 SIPKSISQLSQLCILSLRGNNLKGDIIPELGCLTA 800
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16722.4815.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM08_ECTSI1.980e-1197.14SPX domain-containing protein (Fragment) n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..121
e-value: 6.4E-38
score: 132.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 60..119
e-value: 3.5E-8
score: 33.1
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 37..56
e-value: 1.7
score: 9.5
NoneNo IPR availablePANTHERPTHR46662:SF10coord: 3..121
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 3..121
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16722contigEcto-sp13_S_contig16722:316..2188 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16722.4815.1mRNA_Ecto-sp13_S_contig16722.4815.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16722 316..2188 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16722.4815.1 ID=prot_Ecto-sp13_S_contig16722.4815.1|Name=mRNA_Ecto-sp13_S_contig16722.4815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
GSIPTSISQLSQLCILSLRGNNLKGDIIPELGCLTALQTLSLRDNHFSGV
IPPELGQLTALRHLFMNNNILRGPIPEELSQLSQLEQLFLSDNELDGKIP
ESFGQLINLEELVLSGNQFTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt