mRNA_Ecto-sp13_S_contig16721.4814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16721.4814.1
Unique NamemRNA_Ecto-sp13_S_contig16721.4814.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: D7FJW7_ECTSI (ENDO3c domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW7_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.530e-50
Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 1
Query:    1 VDEGLSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDK 279
            VDEGLSRLRARSGGLTA EMAEV QDDLAD+LRHVHWNKAKAKHIRESA IIVRRH GVVPRRRAELLALPGVGPALVEILLNVFDSWD+DDK
Sbjct:  124 VDEGLSRLRARSGGLTAAEMAEVGQDDLADVLRHVHWNKAKAKHIRESASIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSWDKDDK 216          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A6H5L0N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N6_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 4.400e-47
Identity = 102/168 (60.71%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    1 VDEGLSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNK---------------------------------------AKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDKASVAAAEASSPEARAVVGG---GNRDGDVDGVEGDG 378
            VDEGLSRLRARSGGLTA EMAEVAQDDLAD+LRHVHWNK                                       AKAKHIRESAGIIVRRH GVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDK                      G+R GDVDGVEGDG
Sbjct:   33 VDEGLSRLRARSGGLTAAEMAEVAQDDLADVLRHVHWNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAKHIRESAGIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDKXXXXXXXXXXXXXXXXXXXXXXGDRGGDVDGVEGDG 200          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A0N0VE94_9TRYP (Putative Endonuclease III n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0N0VE94_9TRYP)

HSP 1 Score: 62.0 bits (149), Expect = 6.010e-8
Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   40 GLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDS 261
            GLT  ++  + ++ L + ++ V+    KAKHI ++AGII+R + G VPR+  EL+ALPGVGP +  +  +V D+
Sbjct:   27 GLTPQKVQSMGEEKLRERIKTVNLCNNKAKHIAQTAGIILRDYDGKVPRKYEELIALPGVGPKMANLFFSVADN 100          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A516AG77_LINPO (Endonuclease III-like protein 1 (Fragment) n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG77_LINPO)

HSP 1 Score: 58.5 bits (140), Expect = 3.160e-6
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    7 EGLSRLRARSGGLTAVEMAE-VAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
            E L    AR GGL    + E + + DLA +L+ V +   KAK++R +A  ++ RH G VPR   E L LPGVGP ++ +L+ V
Sbjct:  138 ERLEVATARHGGLAPTSLLEALTEPDLAALLKPVSFAARKAKYLRGAAEQLLARHGGDVPRSADEFLELPGVGPKMMTLLMQV 220          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A833E9T1_CALS0 (Endonuclease III n=2 Tax=Thaumarchaeota TaxID=651137 RepID=A0A833E9T1_CALS0)

HSP 1 Score: 57.4 bits (137), Expect = 3.670e-6
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    4 DEGLSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLN 249
            D    RL +R    T  E+AE    +L  ++R V + + KA+ +R  A +I+ R+ G +PRRR EL+ LPGVGP   +I+L+
Sbjct:   51 DRAFERLFSRYK--TPAEVAEAPVRELERLIRDVGFYRQKAQRLRRIAKMIIERYGGEIPRRREELMKLPGVGPKTADIVLS 130          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A8J5XU92_DIALT (ENDO3c domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU92_DIALT)

HSP 1 Score: 57.4 bits (137), Expect = 6.660e-6
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   25 RARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
            R R  GL+   ++ +++D L D++    +   KAK+I+ +  IIV +H GV P     LLALPGVGP +  I LNV
Sbjct:  122 RLREHGLSVASVSAMSEDTLRDLIWGAGFGNNKAKYIKAATQIIVEQHGGVPPATMDGLLALPGVGPKMALIQLNV 197          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A0K0DK60_ANGCA (ENDO3c domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DK60_ANGCA)

HSP 1 Score: 56.6 bits (135), Expect = 6.990e-6
Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   22 LRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDKASV 288
            +R RS G +   M +++ DDL  +L  V + K KA  I++ A I+  ++HG VP    +L +LPGVGP +  +++ +  +W+  D  +V
Sbjct:   51 MRLRSHGCSVNSMLDISTDDLEKLLHPVGFYKKKAVFIKKVAEILKEKYHGDVPDSVEDLCSLPGVGPKMAHLVMQI--AWNRVDGIAV 137          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A521W4V2_9GAMM (Endonuclease III n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521W4V2_9GAMM)

HSP 1 Score: 56.6 bits (135), Expect = 8.770e-6
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   46 TAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
            T   M E+ +  LA+ +R +   +AKA+H+   + +++ RH G VPR RA L ALPGVG     ILLNV
Sbjct:   97 TPARMVELGEAGLAEYIRTIGLWRAKARHVVAMSRLLLERHGGEVPRERAALEALPGVGRKSANILLNV 165          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A1H3YH08_9BURK (Endonuclease III n=5 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1H3YH08_9BURK)

HSP 1 Score: 55.8 bits (133), Expect = 1.100e-5
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   46 TAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
            T   + ++  + L D ++ +   ++KAKH+ E+A ++V +H G VPR RAEL ALPGVG     ++LNV
Sbjct:   60 TPQAIVQLGVEGLEDYIKTIGLYRSKAKHLVEAARMLVEQHGGEVPRTRAELEALPGVGRKTANVVLNV 128          
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A061DCH8_BABBI (Endonuclease III homolog n=1 Tax=Babesia bigemina TaxID=5866 RepID=A0A061DCH8_BABBI)

HSP 1 Score: 57.0 bits (136), Expect = 1.220e-5
Identity = 27/80 (33.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   13 LSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
            +  L+AR  GL    +A++ +++L  ++  V ++K KAKHI+++  II+ +++G VP    EL++LPGVGP +  +++ +
Sbjct:  234 MDALKAR--GLNVETVAKMPEEELDSLISKVGFHKTKAKHIKQATDIIIEQYNGRVPDSIQELVSLPGVGPKMANLVMQL 311          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJW7_ECTSI4.530e-5093.55ENDO3c domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L0N6_9PHAE4.400e-4760.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0N0VE94_9TRYP6.010e-840.54Putative Endonuclease III n=1 Tax=Leptomonas pyrrh... [more]
A0A516AG77_LINPO3.160e-640.96Endonuclease III-like protein 1 (Fragment) n=1 Tax... [more]
A0A833E9T1_CALS03.670e-639.02Endonuclease III n=2 Tax=Thaumarchaeota TaxID=6511... [more]
A0A8J5XU92_DIALT6.660e-640.79ENDO3c domain-containing protein n=1 Tax=Diacronem... [more]
A0A0K0DK60_ANGCA6.990e-633.71ENDO3c domain-containing protein n=1 Tax=Angiostro... [more]
A0A521W4V2_9GAMM8.770e-643.48Endonuclease III n=1 Tax=Gammaproteobacteria bacte... [more]
A0A1H3YH08_9BURK1.100e-540.58Endonuclease III n=5 Tax=unclassified Variovorax T... [more]
A0A061DCH8_BABBI1.220e-533.75Endonuclease III homolog n=1 Tax=Babesia bigemina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16721contigEcto-sp13_S_contig16721:2327..3772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.1
Seed ortholog evalue6.3e-32
Seed eggNOG ortholog2880.D7FJW7
Preferred nameNTH1
Model size845
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
EC4.2.99.18
Cds size522
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.1532822-UTR-Ecto-sp13_S_contig16721:2326..25921681462877.1532822-UTR-Ecto-sp13_S_contig16721:2326..2592Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16721 2327..2592 -
1681462877.1965873-UTR-Ecto-sp13_S_contig16721:3715..37721681462877.1965873-UTR-Ecto-sp13_S_contig16721:3715..3772Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16721 3716..3772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462877.1651158-CDS-Ecto-sp13_S_contig16721:2592..27651681462877.1651158-CDS-Ecto-sp13_S_contig16721:2592..2765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16721 2593..2765 -
1681462877.177306-CDS-Ecto-sp13_S_contig16721:2886..31751681462877.177306-CDS-Ecto-sp13_S_contig16721:2886..3175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16721 2887..3175 -
1681462877.1882117-CDS-Ecto-sp13_S_contig16721:3655..37151681462877.1882117-CDS-Ecto-sp13_S_contig16721:3655..3715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16721 3656..3715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16721.4814.1prot_Ecto-sp13_S_contig16721.4814.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16721 2593..3715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16721.4814.1

>prot_Ecto-sp13_S_contig16721.4814.1 ID=prot_Ecto-sp13_S_contig16721.4814.1|Name=mRNA_Ecto-sp13_S_contig16721.4814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
MAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLA
LPGVGPALVEILLNVFDSWDEDDKASVAAAEASSPEARAVVGGGNRDGDV
DGVEGDGGDGSGGGDGAAVTVAAVVTAVVAAVTVAGLVSAAKVRTMTTKR
AAREEDCQELGACRQRARASLWT*
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mRNA from alignment at Ecto-sp13_S_contig16721:2327..3772-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16721.4814.1 ID=mRNA_Ecto-sp13_S_contig16721.4814.1|Name=mRNA_Ecto-sp13_S_contig16721.4814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16721:2327..3772- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGACGAGGGTCTATCGCGACTTCGAGCGCGGAGTGGGGGGTTGACGGC CGTGGAGATGGCGGAGGTAGCGCAGGACGACCTCGCAGACATTCTGCGCC ACGTACATTGGAACAAGGTAATAAGTGTAATGCAAAGGGGATTGTGTTGT TGTCCTCCTTTGTTTTGGCGAAGCCTCGAACATAGATTTGGATACTTCGT GCCCTTCATGGGCGTTACGTGTCCCGCCGCGACGTTGATCACCTTGAGAA GGAAGGTAAGCTTGCGCACCAGAACGCACCCCGTTCAGTGCACCTTGTCT TGTTATCTTTACTTTTCGGGGAGAACGAAATTAGTTCGCGTGTTTGTTTT GTTTTTGATTCAGTGTTGGAAAAACGAACAACGTTTGTTGAATCATCCGT TCCACCCTGCCCTATCCCGTCCCACCCCGCCCCGCATCATCCCGTCTCAC CCGGTCCCGTCTCATCCCACCCCATCCCATCCTGTCTCATCCCGTCCCGG CCCACTCCTCCCGTCCCATCCCGTACTGTACTAGATCGTCCCGTCCCATC CTGTCTCATCCCGTCCCATCCCGTCCCGTCCAATGATGTGCCGGCAGGCG AAGGCGAAACACATTCGAGAGTCGGCCGGCATTATCGTGCGGCGTCACCA CGGCGTGGTCCCTAGGCGCAGGGCGGAGCTGCTGGCCCTCCCGGGAGTCG GTCCCGCCCTCGTGGAAATCCTGCTCAACGTTTTCGATTCCTGGGATGAG GACGACAAGGCGTCGGTGGCGGCGGCGGAGGCGTCTTCGCCCGAAGCGAG AGCGGTGGTGGGTGGTGGTAATCGTGATGGCGACGTGGATGGGGTTGAAG GCGACGGCGGTGACGGTAGCGGCGGTGGTGACGGCGGTGGTAGCGGCGGT GACGATAGCAGTGATGGTGACGGCGGTGGTAGCGGCGGTGACGGTAGCGG TGGTGGCGGCGGTGGTAGCGGCGGTGACGGTAGCGGCGGTGGTGACGGCG GTGGTAGCGGCGGTGACGGTAGCGGCGGTGGTGACGGCGGTGGTAGCGGC GGTGACGGTAGCAGGCTTGGTGTCGGCGGCGAAGGTGCGGACGATGACGA CGAAACGGGCGGCGAGAGAAGAAGATTGCCAAGAGCTGGGGGCATGCAGG CAGAGAGCGCGCGCCAGCTTGTGGACTTGACCGGCGGAGTTGACGGGGAC AGCACCGATAGAGACGGAGGTGGCGACAACGGGCCAAGCCACGGAGAGAG GATCAAGGACGAGGAACCAACAACACAGCGCAAGAGGATCGAGGATAAAG ACGGAGAGGATGGCAAGCGGGGGGCAGATGAAAGCGTCACCGGGCCCGAG CTTGTGAAAAACGACCTTGCGCTGTTAGACGAAGACGCCCCTCTCACGGA ACGGAGAAAAAAGGGGGCTCGAGAGAAAAAGGTCGACACGGACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16721:2327..3772-

>mRNA_Ecto-sp13_S_contig16721.4814.1 ID=mRNA_Ecto-sp13_S_contig16721.4814.1|Name=mRNA_Ecto-sp13_S_contig16721.4814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16721:2327..3772- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGGTAGCGCAGGACGACCTCGCAGACATTCTGCGCCACGTACA
TTGGAACAAGGCGAAGGCGAAACACATTCGAGAGTCGGCCGGCATTATCG
TGCGGCGTCACCACGGCGTGGTCCCTAGGCGCAGGGCGGAGCTGCTGGCC
CTCCCGGGAGTCGGTCCCGCCCTCGTGGAAATCCTGCTCAACGTTTTCGA
TTCCTGGGATGAGGACGACAAGGCGTCGGTGGCGGCGGCGGAGGCGTCTT
CGCCCGAAGCGAGAGCGGTGGTGGGTGGTGGTAATCGTGATGGCGACGTG
GATGGGGTTGAAGGCGACGGCGGTGACGGTAGCGGCGGTGGTGACGGCGC
GGCGGTGACGGTAGCGGCGGTGGTGACGGCGGTGGTAGCGGCGGTGACGG
TAGCAGGCTTGGTGTCGGCGGCGAAGGTGCGGACGATGACGACGAAACGG
GCGGCGAGAGAAGAAGATTGCCAAGAGCTGGGGGCATGCAGGCAGAGAGC
GCGCGCCAGCTTGTGGACTTGA
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