mRNA_Ecto-sp13_S_contig16721.4814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: D7FJW7_ECTSI (ENDO3c domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJW7_ECTSI) HSP 1 Score: 176 bits (447), Expect = 4.530e-50 Identity = 87/93 (93.55%), Postives = 89/93 (95.70%), Query Frame = 1
Query: 1 VDEGLSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDK 279
VDEGLSRLRARSGGLTA EMAEV QDDLAD+LRHVHWNKAKAKHIRESA IIVRRH GVVPRRRAELLALPGVGPALVEILLNVFDSWD+DDK
Sbjct: 124 VDEGLSRLRARSGGLTAAEMAEVGQDDLADVLRHVHWNKAKAKHIRESASIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSWDKDDK 216
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A6H5L0N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N6_9PHAE) HSP 1 Score: 169 bits (428), Expect = 4.400e-47 Identity = 102/168 (60.71%), Postives = 104/168 (61.90%), Query Frame = 1
Query: 1 VDEGLSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNK---------------------------------------AKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDKASVAAAEASSPEARAVVGG---GNRDGDVDGVEGDG 378
VDEGLSRLRARSGGLTA EMAEVAQDDLAD+LRHVHWNK AKAKHIRESAGIIVRRH GVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDK G+R GDVDGVEGDG
Sbjct: 33 VDEGLSRLRARSGGLTAAEMAEVAQDDLADVLRHVHWNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKAKHIRESAGIIVRRHRGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDKXXXXXXXXXXXXXXXXXXXXXXGDRGGDVDGVEGDG 200
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A0N0VE94_9TRYP (Putative Endonuclease III n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0N0VE94_9TRYP) HSP 1 Score: 62.0 bits (149), Expect = 6.010e-8 Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 40 GLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDS 261
GLT ++ + ++ L + ++ V+ KAKHI ++AGII+R + G VPR+ EL+ALPGVGP + + +V D+
Sbjct: 27 GLTPQKVQSMGEEKLRERIKTVNLCNNKAKHIAQTAGIILRDYDGKVPRKYEELIALPGVGPKMANLFFSVADN 100
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A516AG77_LINPO (Endonuclease III-like protein 1 (Fragment) n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG77_LINPO) HSP 1 Score: 58.5 bits (140), Expect = 3.160e-6 Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 7 EGLSRLRARSGGLTAVEMAE-VAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
E L AR GGL + E + + DLA +L+ V + KAK++R +A ++ RH G VPR E L LPGVGP ++ +L+ V
Sbjct: 138 ERLEVATARHGGLAPTSLLEALTEPDLAALLKPVSFAARKAKYLRGAAEQLLARHGGDVPRSADEFLELPGVGPKMMTLLMQV 220
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A833E9T1_CALS0 (Endonuclease III n=2 Tax=Thaumarchaeota TaxID=651137 RepID=A0A833E9T1_CALS0) HSP 1 Score: 57.4 bits (137), Expect = 3.670e-6 Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 4 DEGLSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLN 249
D RL +R T E+AE +L ++R V + + KA+ +R A +I+ R+ G +PRRR EL+ LPGVGP +I+L+
Sbjct: 51 DRAFERLFSRYK--TPAEVAEAPVRELERLIRDVGFYRQKAQRLRRIAKMIIERYGGEIPRRREELMKLPGVGPKTADIVLS 130
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A8J5XU92_DIALT (ENDO3c domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU92_DIALT) HSP 1 Score: 57.4 bits (137), Expect = 6.660e-6 Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 25 RARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
R R GL+ ++ +++D L D++ + KAK+I+ + IIV +H GV P LLALPGVGP + I LNV
Sbjct: 122 RLREHGLSVASVSAMSEDTLRDLIWGAGFGNNKAKYIKAATQIIVEQHGGVPPATMDGLLALPGVGPKMALIQLNV 197
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A0K0DK60_ANGCA (ENDO3c domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DK60_ANGCA) HSP 1 Score: 56.6 bits (135), Expect = 6.990e-6 Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 22 LRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNVFDSWDEDDKASV 288
+R RS G + M +++ DDL +L V + K KA I++ A I+ ++HG VP +L +LPGVGP + +++ + +W+ D +V
Sbjct: 51 MRLRSHGCSVNSMLDISTDDLEKLLHPVGFYKKKAVFIKKVAEILKEKYHGDVPDSVEDLCSLPGVGPKMAHLVMQI--AWNRVDGIAV 137
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A521W4V2_9GAMM (Endonuclease III n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521W4V2_9GAMM) HSP 1 Score: 56.6 bits (135), Expect = 8.770e-6 Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query: 46 TAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
T M E+ + LA+ +R + +AKA+H+ + +++ RH G VPR RA L ALPGVG ILLNV
Sbjct: 97 TPARMVELGEAGLAEYIRTIGLWRAKARHVVAMSRLLLERHGGEVPRERAALEALPGVGRKSANILLNV 165
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A1H3YH08_9BURK (Endonuclease III n=5 Tax=unclassified Variovorax TaxID=663243 RepID=A0A1H3YH08_9BURK) HSP 1 Score: 55.8 bits (133), Expect = 1.100e-5 Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 46 TAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
T + ++ + L D ++ + ++KAKH+ E+A ++V +H G VPR RAEL ALPGVG ++LNV
Sbjct: 60 TPQAIVQLGVEGLEDYIKTIGLYRSKAKHLVEAARMLVEQHGGEVPRTRAELEALPGVGRKTANVVLNV 128
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Match: A0A061DCH8_BABBI (Endonuclease III homolog n=1 Tax=Babesia bigemina TaxID=5866 RepID=A0A061DCH8_BABBI) HSP 1 Score: 57.0 bits (136), Expect = 1.220e-5 Identity = 27/80 (33.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query: 13 LSRLRARSGGLTAVEMAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLALPGVGPALVEILLNV 252
+ L+AR GL +A++ +++L ++ V ++K KAKHI+++ II+ +++G VP EL++LPGVGP + +++ +
Sbjct: 234 MDALKAR--GLNVETVAKMPEEELDSLISKVGFHKTKAKHIKQATDIIIEQYNGRVPDSIQELVSLPGVGPKMANLVMQL 311 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16721.4814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16721.4814.1 >prot_Ecto-sp13_S_contig16721.4814.1 ID=prot_Ecto-sp13_S_contig16721.4814.1|Name=mRNA_Ecto-sp13_S_contig16721.4814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp MAEVAQDDLADILRHVHWNKAKAKHIRESAGIIVRRHHGVVPRRRAELLAback to top mRNA from alignment at Ecto-sp13_S_contig16721:2327..3772- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16721.4814.1 ID=mRNA_Ecto-sp13_S_contig16721.4814.1|Name=mRNA_Ecto-sp13_S_contig16721.4814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1446bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16721:2327..3772- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16721:2327..3772- >mRNA_Ecto-sp13_S_contig16721.4814.1 ID=mRNA_Ecto-sp13_S_contig16721.4814.1|Name=mRNA_Ecto-sp13_S_contig16721.4814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16721:2327..3772- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |