mRNA_Ecto-sp13_S_contig16678.4782.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16678.4782.1
Unique NamemRNA_Ecto-sp13_S_contig16678.4782.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Match: D7FI55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI55_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.360e-53
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 CTYDTTLVAKLLFGIFDVDKRGRVTMAELDAMVRMLYGSPDADPDLLKSLAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV 282
            CTYDTTLVAK+LFGIFDVDKRGRVTMAELDAMVRMLYGSPDADPDLLK+LAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV
Sbjct:  116 CTYDTTLVAKILFGIFDVDKRGRVTMAELDAMVRMLYGSPDADPDLLKALAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV 209
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BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Match: A0A7S2SD95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD95_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.520e-18
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 CTYDTTLVAKLLFGIFDVDKRGRVTMAELDAMVRMLYGSPDAD-----PD---LLKSLAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV 282
            CTYD  L+ KL F IFDVD++GR+ + E DA++RM+Y   D +     PD   LLK + VNG G+   +T DEF   ++ +  +  PAF+LQ+A+R+++LG+
Sbjct:  121 CTYDVRLITKLAFDIFDVDRKGRLDICECDALLRMVYDVEDLEEIEGPPDGKQLLKEIDVNGDGE---VTIDEFSDLMETHQYILSPAFDLQRALRQRLLGI 219
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BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Match: F0YJ91_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJ91_AURAN)

HSP 1 Score: 87.4 bits (215), Expect = 4.420e-18
Identity = 40/93 (43.01%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    4 TYDTTLVAKLLFGIFDVDKRGRVTMAELDAMVRMLYGSPDADPDLLKSLAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV 282
            TYD +L+AKL + IFDVD+ G++ MAE DAM+RM+Y  P +DP++L+ + VN  G+   ++ +E  Q ++ +  +  PAF+LQ+ +R ++LGV
Sbjct:   24 TYDASLIAKLAYNIFDVDREGKIDMAEADAMLRMVYNVPKSDPEILEKMDVNKDGN---ISLEELEQLIEVHNYILMPAFDLQRMLRIRILGV 113
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BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Match: A0A7S2G1T6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1T6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.590e-16
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 CTYDTTLVAKLLFGIFDVDKRGRVTMAELDAMVRMLYGSPDAD--------PDLLKSLAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV 282
            CTYD  L+ KL F IFD+D++G++ +AE DA++RM+Y  P  D         ++++ + VNG G+   +T DEF   ++ +  + QPA +LQ+A+R+++LGV
Sbjct:  106 CTYDVRLITKLAFDIFDIDQQGKLDLAECDALLRMVYDVPHLDNIEGPPSGKEIMELIDVNGDGE---VTIDEFSDLMETHLYILQPALDLQRALRQRLLGV 204
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BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Match: A0A7S2CHR9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHR9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.470e-16
Identity = 40/102 (39.22%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:    1 CTYDTTLVAKLLFGIFDVDKRGRVTMAELDAMVRMLYGSPDAD--------PDLLKSLAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV 282
            CTYD  L+ KL F IFD+D++G++ +AE DA++RM+Y  P  D         ++++ + VNG G+   +T DEF   ++ +  + QPA +LQ+A+R+++LGV
Sbjct:  106 CTYDVRLITKLAFDIFDIDQQGKLDLAECDALLRMVYDVPHLDNIEGPPSGKEIMELIDVNGDGE---VTIDEFSDLMETHLYILQPALDLQRALRQRLLGV 204
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BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Match: A0A835YJN7_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.530e-16
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 CTYDTTLVAKLLFGIFDVDKRGRVTMAELDAMVRMLYGSPDADPDLLKSLAVNGSGDEDALTFDEFLQAVQDNYEV 228
            CTYDT L+A+ +F IFDVD R  +T+ E DA++RML GS DADP +LK LA +G GD D + +DEFL   + + +V
Sbjct:  200 CTYDTRLLARYVFLIFDVDARAFITVPECDALLRMLAGSADADPAVLKLLAPHGDGDGDGIGYDEFLAVAEKHRQV 275
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BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Match: A0A8J2SZ55_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ55_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.550e-8
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 1 
Query:   82 ELDAMVRMLYGSPDADPDLLKSLAVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV 282
            E DAM+RM+Y S  ADP LL  + +NG G+   ++ +E  Q V+++  V  PAF+LQ+ +R+++LGV
Sbjct:  162 EADAMLRMVYASRKADPLLLTQIDINGDGE---VSMEELQQTVEEDNSVLAPAFQLQRMLRQRILGV 225
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16678.4782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FI55_ECTSI2.360e-5397.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SD95_9STRA2.520e-1843.14Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0YJ91_AURAN4.420e-1843.01Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2G1T6_9STRA1.590e-1639.22Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2CHR9_9STRA2.470e-1639.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YJN7_9STRA6.530e-1652.63EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A8J2SZ55_9STRA4.550e-843.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16678contigEcto-sp13_S_contig16678:1439..2769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score185.3
Seed ortholog evalue1.3e-44
Seed eggNOG ortholog2880.D7FI55
Model size284
KEGG koko:K06268
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0034@2759
Cds size282
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462874.3424501-CDS-Ecto-sp13_S_contig16678:1438..14681681462874.3424501-CDS-Ecto-sp13_S_contig16678:1438..1468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16678 1439..1468 +
1681462874.3583834-CDS-Ecto-sp13_S_contig16678:1988..21621681462874.3583834-CDS-Ecto-sp13_S_contig16678:1988..2162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16678 1989..2162 +
1681462874.3698936-CDS-Ecto-sp13_S_contig16678:2689..27671681462874.3698936-CDS-Ecto-sp13_S_contig16678:2689..2767Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16678 2690..2767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16678.4782.1prot_Ecto-sp13_S_contig16678.4782.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16678 1439..2767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16678.4782.1

>prot_Ecto-sp13_S_contig16678.4782.1 ID=prot_Ecto-sp13_S_contig16678.4782.1|Name=mRNA_Ecto-sp13_S_contig16678.4782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
CTYDTTLVAKLLFGIFDVDKRGRVTMAELDAMVRMLYGSPDADPDLLKSL
AVNGSGDEDALTFDEFLQAVQDNYEVAQPAFELQKAIRRKVLGV
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mRNA from alignment at Ecto-sp13_S_contig16678:1439..2769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16678.4782.1 ID=mRNA_Ecto-sp13_S_contig16678.4782.1|Name=mRNA_Ecto-sp13_S_contig16678.4782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1331bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16678:1439..2769+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACGTACGACACCACTCTGGTGGCCAAGGTGCGCTACGGCGGGGCGAG
TCTGATCCTCCTCCGCCTCGTGCCGTCGGCTTCATCGGCAAGGCAGACGT
TGTTTTTTGCCTTGTGTGCTGTGGTACACATGAATTGCTCCTCTCTGTAG
GACCGCGAAACACGTCATTTTTCTGCACCATTTTCTGCCTGACTGCTAGC
CAGCATCATTTCCGCCATGCTTGGTGTTGTTGCTGCTGCTGTGCCACTGC
TGCTGTGGAGGTTCCTCGACTCCTAACCCCACCCCAACGATAACCCTACC
CTACCTGCTATCTCCAGTCTGTCTCGCCACCCCTTGCTCTATGCTGCCGC
CCCAAGGTTAACCCTTAAACTTTGCCCCGAAAACGCATTTCTCCGCGCGT
GCTTGAAGCCAAATGGGCTGAAATGAGCATGCCCATGTCCTCATCCTACC
TTCCTTCATTCCAAACTGCCGGCCCCCCAAACGCCTCAACACCCATCTCC
CGTCGTCGGACACTCTCGCGGACCAACACTATTGCCACGCATGTGCGTAG
CTCTTGTTCGGCATCTTCGACGTCGACAAGAGGGGAAGGGTCACCATGGC
GGAGCTGGACGCGATGGTGAGGATGCTGTATGGGTCACCGGACGCCGATC
CCGACCTGTTGAAGTCGCTGGCCGTCAACGGCAGCGGCGATGAAGACGCC
CTTACCTTCGACGAGTTCTTACAGGTACTAGGCGGCCCGGGATTTTTGTC
CCTTTTTGATCGCGGTTTGACACGCCGGTTTTTTGTCCCGTTTCAACGCG
GTTTTGTCCCGTTTCGCGCGGTTTGATACGCATCTTTTGGGCCCAAGTGT
TTCACGTGTGCGATGACGGTGGGTCTGTGGTCGGACTTTGGACGCATTCC
CTTGATCTTCAGTCCCCACCCCAGCACATGACAGTTCGGATGGCTGATGA
CGATGCATTTGGCACGTTTGATGATCACTGTGATCGATGAGTCGATGGGA
TAAAACGCGGCACCCCCCACTGCGAGCGTTTGACGGTCAGACGCCAGACG
TGGCGACGACAGCAGACAAGCACAAAAAATTGGTCTGGCATCTAGTAGAT
CAACATTCCCGCTGCTACTGACCGCGACGCGTACCATCTCATCTCACGGC
ATTCACCGCACTACTCTGTCCCGGTTGCCAATCGGCACGTGTGATGACCG
AAACTTGGACGGAGCGGCGCACGCCGCCGCCGCCGCCGACAACTAGAAAA
GGCGGTGCAGGACAACTACGAGGTGGCGCAGCCGGCGTTCGAGCTGCAGA
AGGCGATCCGCCGCAAGGTGTTGGGTGTCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16678:1439..2769+

>mRNA_Ecto-sp13_S_contig16678.4782.1 ID=mRNA_Ecto-sp13_S_contig16678.4782.1|Name=mRNA_Ecto-sp13_S_contig16678.4782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16678:1439..2769+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCACGTACGACACCACTCTGGTGGCCAAGCTCTTGTTCGGCATCTTCGA
CGTCGACAAGAGGGGAAGGGTCACCATGGCGGAGCTGGACGCGATGGTGA
GGATGCTGTATGGGTCACCGGACGCCGATCCCGACCTGTTGAAGTCGCTG
GCCGTCAACGGCAGCGGCGATGAAGACGCCCTTACCTTCGACGAGTTCTT
ACAGGCGGTGCAGGACAACTACGAGGTGGCGCAGCCGGCGTTCGAGCTGC
AGAAGGCGATCCGCCGCAAGGTGTTGGGTGTC
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