mRNA_Ecto-sp13_S_contig16651.4768.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16651.4768.1
Unique NamemRNA_Ecto-sp13_S_contig16651.4768.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16651.4768.1 vs. uniprot
Match: D8LPI8_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI8_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.460e-107
Identity = 152/168 (90.48%), Postives = 156/168 (92.86%), Query Frame = 1 
Query:    1 LQPVDFRGEDIFHDLEVEGRPSQIHGRGTFSKNGASENDVLLSVLLPSKAVEKGFAR--DGGYDCNQHVMHKDGLGVMFIDPAARMRGNLGACKEDFKLGVLILLNHSDDANIAISAREAAIPDWYEALGEKFTTWYECMLVATRKIGVGEEMTIEYAVAPKGIRPAK 498
            L PVDFRGEDIFHDL+VEGRPSQIHGRGTFSKNGAS+NDVLLSV+LPSKAVEKGFA   DGGYDCNQHVMHKDGLGVMFIDP ARMRGNLGACKEDFKLGVL LLNHSDD NIAIS REAAIPDWYEALGEKFTTWYEC LVATR IGV EEMTIEYA+APKGIR AK
Sbjct:    5 LTPVDFRGEDIFHDLDVEGRPSQIHGRGTFSKNGASKNDVLLSVILPSKAVEKGFASNSDGGYDCNQHVMHKDGLGVMFIDPGARMRGNLGACKEDFKLGVLRLLNHSDDPNIAISTREAAIPDWYEALGEKFTTWYECTLVATRAIGVDEEMTIEYALAPKGIRLAK 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16651.4768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPI8_ECTSI1.460e-10790.48N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16651contigEcto-sp13_S_contig16651:2519..3034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size516
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-06_005230.1
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.5120795-CDS-Ecto-sp13_S_contig16651:2518..30341681462873.5120795-CDS-Ecto-sp13_S_contig16651:2518..3034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16651 2519..3034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16651.4768.1prot_Ecto-sp13_S_contig16651.4768.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16651 2519..3034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16651.4768.1

>prot_Ecto-sp13_S_contig16651.4768.1 ID=prot_Ecto-sp13_S_contig16651.4768.1|Name=mRNA_Ecto-sp13_S_contig16651.4768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
LQPVDFRGEDIFHDLEVEGRPSQIHGRGTFSKNGASENDVLLSVLLPSKA
VEKGFARDGGYDCNQHVMHKDGLGVMFIDPAARMRGNLGACKEDFKLGVL
ILLNHSDDANIAISAREAAIPDWYEALGEKFTTWYECMLVATRKIGVGEE
MTIEYAVAPKGIRPAKKKRRK*
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mRNA from alignment at Ecto-sp13_S_contig16651:2519..3034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16651.4768.1 ID=mRNA_Ecto-sp13_S_contig16651.4768.1|Name=mRNA_Ecto-sp13_S_contig16651.4768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16651:2519..3034- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCCTGTGGATTTTCGGGGCGAGGACATTTTTCACGATCTTGAGGT
GGAAGGGAGACCGAGCCAGATTCACGGCAGAGGCACTTTCTCCAAAAACG
GTGCATCGGAGAACGACGTTCTTCTGAGTGTCCTTCTACCTAGCAAAGCA
GTAGAGAAAGGTTTTGCTAGAGATGGTGGATACGACTGCAATCAGCATGT
GATGCACAAAGATGGCCTAGGCGTCATGTTCATTGACCCGGCTGCGCGAA
TGCGAGGCAACTTGGGGGCATGTAAAGAAGACTTTAAGCTCGGGGTGCTC
ATATTGCTCAACCATTCCGACGATGCCAACATAGCCATCTCTGCCCGCGA
GGCAGCAATACCCGATTGGTACGAAGCACTTGGGGAAAAGTTTACCACGT
GGTACGAGTGTATGCTGGTGGCTACTCGAAAGATTGGAGTAGGTGAAGAA
ATGACGATAGAGTATGCCGTTGCGCCGAAGGGCATCCGGCCGGCAAAGAA
AAAGCGTCGGAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16651:2519..3034-

>mRNA_Ecto-sp13_S_contig16651.4768.1 ID=mRNA_Ecto-sp13_S_contig16651.4768.1|Name=mRNA_Ecto-sp13_S_contig16651.4768.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16651:2519..3034- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCAGCCTGTGGATTTTCGGGGCGAGGACATTTTTCACGATCTTGAGGT
GGAAGGGAGACCGAGCCAGATTCACGGCAGAGGCACTTTCTCCAAAAACG
GTGCATCGGAGAACGACGTTCTTCTGAGTGTCCTTCTACCTAGCAAAGCA
GTAGAGAAAGGTTTTGCTAGAGATGGTGGATACGACTGCAATCAGCATGT
GATGCACAAAGATGGCCTAGGCGTCATGTTCATTGACCCGGCTGCGCGAA
TGCGAGGCAACTTGGGGGCATGTAAAGAAGACTTTAAGCTCGGGGTGCTC
ATATTGCTCAACCATTCCGACGATGCCAACATAGCCATCTCTGCCCGCGA
GGCAGCAATACCCGATTGGTACGAAGCACTTGGGGAAAAGTTTACCACGT
GGTACGAGTGTATGCTGGTGGCTACTCGAAAGATTGGAGTAGGTGAAGAA
ATGACGATAGAGTATGCCGTTGCGCCGAAGGGCATCCGGCCGGCAAAGAA
AAAGCGTCGGAAGTAG
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