mRNA_Ecto-sp13_S_contig1664.4759.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A6H5L4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q6_9PHAE) HSP 1 Score: 208 bits (529), Expect = 3.750e-60 Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = -1
Query: 1 LGANSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAARGGRR 324
LG NSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAARGGRR
Sbjct: 366 LGTNSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAARGGRR 473
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: D7FNN8_ECTSI (Fanconi anemia, complementation group I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN8_ECTSI) HSP 1 Score: 193 bits (491), Expect = 4.910e-55 Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = -1
Query: 25 LGANSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEE 324
LG NSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSL+RIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEE
Sbjct: 348 LGTNSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLARIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEE 447
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A835YPY5_9STRA (FANCI solenoid 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY5_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 7.690e-15 Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query: 16 STEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAA-EVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAA 312
+T EL V+GT+LLH + A++ DH LA+ L+ +R AAAA RA +PFRLALLL+L R+QRF LD V +++ Y R W ++ E A
Sbjct: 328 ATAELLSVQGTVLLHCDGALRADHELAAAALRALRRDAAAAPRAARALSPFRLALLLTLVRVQRFSAAALDGVAAAIAEACAYARRRAACGWFDTAERTA 427
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: UPI0016022001 (Fanconi anemia group I protein-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016022001) HSP 1 Score: 68.9 bits (167), Expect = 2.480e-11 Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = -1
Query: 37 LGANSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWL 324
L + + ++L +EGTI+LH FA+KQD L +K F + + + +PF +AL LS++RIQRF++P+ + ++ +S + +R+GS W+
Sbjct: 257 LSSLTADQLCHMEGTIILHITFAIKQDQDLGREFVK-FLKAGQQGSLTKILSPFNVALALSVARIQRFEEPIFEFLKSAISRSFKDEQIRQGSKWV 351
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A444UW29_ACIRT (Fanconi anemia group I protein n=7 Tax=Acipenseroidei TaxID=186622 RepID=A0A444UW29_ACIRT) HSP 1 Score: 67.8 bits (164), Expect = 6.290e-11 Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query: 34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
++LR VEGT++LH FA+K DH L ++K + EVG+ PF +AL+LS++RI RF++ V D ++ + C +++GS +++
Sbjct: 291 DQLRHVEGTVILHLVFAIKLDHELGRELVKYLK-----GEVGKMLCPFNIALVLSMARIHRFEEQVSDFLKTAIIKCFRDSQIQQGSKFIQ 376
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A3B3HFA9_ORYLA (FA complementation group I n=11 Tax=Oryzias TaxID=8089 RepID=A0A3B3HFA9_ORYLA) HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10 Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = -1
Query: 34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
++LR VEGT++LH FA++ DH L LK F+ A PF +ALLLS++RIQR+++ V DL++ V +HL++GS +L+
Sbjct: 170 DQLRHVEGTVILHIVFAIRLDHELGREFLKSFKTSYAD------MCPFSVALLLSVARIQRYEEQVFDLLKGAVIKSYKDEHLQQGSKFLQ 254
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: W5NBC0_LEPOC (FA complementation group I n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5NBC0_LEPOC) HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10 Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = -1
Query: 34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
++LR VEGT++LH FA++ DH L +LKG + EVG+A PF +ALLLS++RIQR+++ +L++ + +++GS + +
Sbjct: 260 DQLRHVEGTVILHVVFAVRLDHDLGRELLKGL-KAGQQGEVGQALCPFSVALLLSVARIQRYEEQAFELLKAAIVKSFRDSQVQQGSRFAQ 349
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: H2M7Z4_ORYLA (FA complementation group I n=1 Tax=Oryzias latipes TaxID=8090 RepID=H2M7Z4_ORYLA) HSP 1 Score: 66.6 bits (161), Expect = 1.600e-10 Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = -1
Query: 34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
++LR VEGT++LH FA++ DH L LK F+ PF +ALLLS++RIQR+++ V DL++ V +HL++GS +L+
Sbjct: 226 DQLRHVEGTVILHIVFAIRLDHELGREFLKSFKVIQMIFTSYADMCPFSVALLLSVARIQRYEEQVFDLLKGAVIKSYKDEHLQQGSKFLQ 316
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A2K5ETA5_AOTNA (FA complementation group I n=2 Tax=Simiiformes TaxID=314293 RepID=A0A2K5ETA5_AOTNA) HSP 1 Score: 66.2 bits (160), Expect = 2.160e-10 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = -1
Query: 31 ELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLES 303
ELR VEGTI+LH FA+K D+ L +LK + + +PF +ALLLS++RIQRFQ+ VLD ++ V L +GS +L++
Sbjct: 249 ELRHVEGTIILHIVFAIKLDYELGRELLKHLKVAGQQGDSNNNLSPFSIALLLSVTRIQRFQEQVLDFLKTSVVKSFKDLQLLQGSKFLQN 339
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A2K6JNU9_RHIBE (Uncharacterized protein n=3 Tax=Rhinopithecus TaxID=542827 RepID=A0A2K6JNU9_RHIBE) HSP 1 Score: 66.2 bits (160), Expect = 2.180e-10 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = -1
Query: 31 ELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLES 303
ELR VEGTI+LH FA+K D+ L +LK + + +PF +ALLLS++RIQRFQ VLDL++ V L +GS +L++
Sbjct: 249 ELRHVEGTIILHIVFAIKLDYELGRELLKHLKVAGQQGDSKNNLSPFSIALLLSVTRIQRFQDQVLDLLKTSVVKSFKDLQLLQGSKFLQN 339 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1664.4759.1 >prot_Ecto-sp13_S_contig1664.4759.1 ID=prot_Ecto-sp13_S_contig1664.4759.1|Name=mRNA_Ecto-sp13_S_contig1664.4759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp PPPPPCRLFLALQPRGALPEVVVHQAVGHDLLDQVQDRLLEPLDAREGEQback to top mRNA from alignment at Ecto-sp13_S_contig1664:2754..3081+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1664.4759.1 ID=mRNA_Ecto-sp13_S_contig1664.4759.1|Name=mRNA_Ecto-sp13_S_contig1664.4759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:2754..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1664:2754..3081+ >mRNA_Ecto-sp13_S_contig1664.4759.1 ID=mRNA_Ecto-sp13_S_contig1664.4759.1|Name=mRNA_Ecto-sp13_S_contig1664.4759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:2754..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |