mRNA_Ecto-sp13_S_contig1664.4759.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1664.4759.1
Unique NamemRNA_Ecto-sp13_S_contig1664.4759.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A6H5L4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q6_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 3.750e-60
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = -1
Query:    1 LGANSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAARGGRR 324
            LG NSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAARGGRR
Sbjct:  366 LGTNSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAARGGRR 473          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: D7FNN8_ECTSI (Fanconi anemia, complementation group I n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNN8_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 4.910e-55
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = -1
Query:   25 LGANSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEE 324
            LG NSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSL+RIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEE
Sbjct:  348 LGTNSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLARIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEE 447          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A835YPY5_9STRA (FANCI solenoid 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPY5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.690e-15
Identity = 43/100 (43.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:   16 STEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAA-EVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLESEEEAA 312
            +T EL  V+GT+LLH + A++ DH LA+  L+  +R AAAA    RA +PFRLALLL+L R+QRF    LD V   +++   Y   R    W ++ E  A
Sbjct:  328 ATAELLSVQGTVLLHCDGALRADHELAAAALRALRRDAAAAPRAARALSPFRLALLLTLVRVQRFSAAALDGVAAAIAEACAYARRRAACGWFDTAERTA 427          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: UPI0016022001 (Fanconi anemia group I protein-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016022001)

HSP 1 Score: 68.9 bits (167), Expect = 2.480e-11
Identity = 33/96 (34.38%), Postives = 59/96 (61.46%), Query Frame = -1
Query:   37 LGANSTEELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWL 324
            L + + ++L  +EGTI+LH  FA+KQD  L    +K F +      + +  +PF +AL LS++RIQRF++P+ + ++  +S     + +R+GS W+
Sbjct:  257 LSSLTADQLCHMEGTIILHITFAIKQDQDLGREFVK-FLKAGQQGSLTKILSPFNVALALSVARIQRFEEPIFEFLKSAISRSFKDEQIRQGSKWV 351          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A444UW29_ACIRT (Fanconi anemia group I protein n=7 Tax=Acipenseroidei TaxID=186622 RepID=A0A444UW29_ACIRT)

HSP 1 Score: 67.8 bits (164), Expect = 6.290e-11
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = -1
Query:   34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
            ++LR VEGT++LH  FA+K DH L   ++K  +      EVG+   PF +AL+LS++RI RF++ V D ++  +  C     +++GS +++
Sbjct:  291 DQLRHVEGTVILHLVFAIKLDHELGRELVKYLK-----GEVGKMLCPFNIALVLSMARIHRFEEQVSDFLKTAIIKCFRDSQIQQGSKFIQ 376          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A3B3HFA9_ORYLA (FA complementation group I n=11 Tax=Oryzias TaxID=8089 RepID=A0A3B3HFA9_ORYLA)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = -1
Query:   34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
            ++LR VEGT++LH  FA++ DH L    LK F+   A         PF +ALLLS++RIQR+++ V DL++  V      +HL++GS +L+
Sbjct:  170 DQLRHVEGTVILHIVFAIRLDHELGREFLKSFKTSYAD------MCPFSVALLLSVARIQRYEEQVFDLLKGAVIKSYKDEHLQQGSKFLQ 254          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: W5NBC0_LEPOC (FA complementation group I n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5NBC0_LEPOC)

HSP 1 Score: 67.0 bits (162), Expect = 1.170e-10
Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = -1
Query:   34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
            ++LR VEGT++LH  FA++ DH L   +LKG  +     EVG+A  PF +ALLLS++RIQR+++   +L++  +        +++GS + +
Sbjct:  260 DQLRHVEGTVILHVVFAVRLDHDLGRELLKGL-KAGQQGEVGQALCPFSVALLLSVARIQRYEEQAFELLKAAIVKSFRDSQVQQGSRFAQ 349          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: H2M7Z4_ORYLA (FA complementation group I n=1 Tax=Oryzias latipes TaxID=8090 RepID=H2M7Z4_ORYLA)

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-10
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = -1
Query:   34 EELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLE 306
            ++LR VEGT++LH  FA++ DH L    LK F+             PF +ALLLS++RIQR+++ V DL++  V      +HL++GS +L+
Sbjct:  226 DQLRHVEGTVILHIVFAIRLDHELGREFLKSFKVIQMIFTSYADMCPFSVALLLSVARIQRYEEQVFDLLKGAVIKSYKDEHLQQGSKFLQ 316          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A2K5ETA5_AOTNA (FA complementation group I n=2 Tax=Simiiformes TaxID=314293 RepID=A0A2K5ETA5_AOTNA)

HSP 1 Score: 66.2 bits (160), Expect = 2.160e-10
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = -1
Query:   31 ELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLES 303
            ELR VEGTI+LH  FA+K D+ L   +LK  +      +     +PF +ALLLS++RIQRFQ+ VLD ++  V        L +GS +L++
Sbjct:  249 ELRHVEGTIILHIVFAIKLDYELGRELLKHLKVAGQQGDSNNNLSPFSIALLLSVTRIQRFQEQVLDFLKTSVVKSFKDLQLLQGSKFLQN 339          
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Match: A0A2K6JNU9_RHIBE (Uncharacterized protein n=3 Tax=Rhinopithecus TaxID=542827 RepID=A0A2K6JNU9_RHIBE)

HSP 1 Score: 66.2 bits (160), Expect = 2.180e-10
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = -1
Query:   31 ELRFVEGTILLHFNFAMKQDHSLASCVLKGFQRRAAAAEVGRAFTPFRLALLLSLSRIQRFQQPVLDLVEEIVSDCLVYDHLREGSAWLES 303
            ELR VEGTI+LH  FA+K D+ L   +LK  +      +     +PF +ALLLS++RIQRFQ  VLDL++  V        L +GS +L++
Sbjct:  249 ELRHVEGTIILHIVFAIKLDYELGRELLKHLKVAGQQGDSKNNLSPFSIALLLSVTRIQRFQDQVLDLLKTSVVKSFKDLQLLQGSKFLQN 339          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1664.4759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q6_9PHAE3.750e-6099.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNN8_ECTSI4.910e-5598.00Fanconi anemia, complementation group I n=1 Tax=Ec... [more]
A0A835YPY5_9STRA7.690e-1543.00FANCI solenoid 1-domain-containing protein n=1 Tax... [more]
UPI00160220012.480e-1134.38Fanconi anemia group I protein-like n=1 Tax=Branch... [more]
A0A444UW29_ACIRT6.290e-1136.26Fanconi anemia group I protein n=7 Tax=Acipenseroi... [more]
A0A3B3HFA9_ORYLA1.170e-1040.66FA complementation group I n=11 Tax=Oryzias TaxID=... [more]
W5NBC0_LEPOC1.170e-1037.36FA complementation group I n=3 Tax=Lepisosteidae T... [more]
H2M7Z4_ORYLA1.600e-1039.56FA complementation group I n=1 Tax=Oryzias latipes... [more]
A0A2K5ETA5_AOTNA2.160e-1041.76FA complementation group I n=2 Tax=Simiiformes Tax... [more]
A0A2K6JNU9_RHIBE2.180e-1042.86Uncharacterized protein n=3 Tax=Rhinopithecus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1664contigEcto-sp13_S_contig1664:2754..3081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462873.0063574-CDS-Ecto-sp13_S_contig1664:2753..30801681462873.0063574-CDS-Ecto-sp13_S_contig1664:2753..3080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1664 2754..3080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1664.4759.1prot_Ecto-sp13_S_contig1664.4759.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1664 2754..3080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1664.4759.1

>prot_Ecto-sp13_S_contig1664.4759.1 ID=prot_Ecto-sp13_S_contig1664.4759.1|Name=mRNA_Ecto-sp13_S_contig1664.4759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
PPPPPCRLFLALQPRGALPEVVVHQAVGHDLLDQVQDRLLEPLDAREGEQ
EREAERSEGATDLRRGGPPLETFEHAARKAVVLLHREVEVQEDGALHEPE
LLGAVGSEP
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mRNA from alignment at Ecto-sp13_S_contig1664:2754..3081+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1664.4759.1 ID=mRNA_Ecto-sp13_S_contig1664.4759.1|Name=mRNA_Ecto-sp13_S_contig1664.4759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:2754..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCGCCCCCCCCGTGCCGCCTCTTCCTCGCTCTCCAGCCACGCGGAGC CCTCCCTGAGGTGGTCGTACACCAGGCAGTCGGACACGATCTCCTCGACC AGGTCCAGGACCGGCTGCTGGAACCGCTGGATGCGAGAGAGGGAGAGCAG GAGCGCGAGGCGGAACGGAGTGAAGGCGCGACCGACCTCCGCCGCGGCGG CCCTCCTCTGGAAACCTTTGAGCACGCAGCTCGCAAGGCTGTGGTCCTGC TTCATCGCGAAGTTGAAGTGCAGGAGGATGGTGCCCTCCACGAACCGGAG CTCCTCGGTGCTGTTGGCTCCGAGCCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1664:2754..3081+

>mRNA_Ecto-sp13_S_contig1664.4759.1 ID=mRNA_Ecto-sp13_S_contig1664.4759.1|Name=mRNA_Ecto-sp13_S_contig1664.4759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1664:2754..3081+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCGCCCCCCCCGTGCCGCCTCTTCCTCGCTCTCCAGCCACGCGGAGC
CCTCCCTGAGGTGGTCGTACACCAGGCAGTCGGACACGATCTCCTCGACC
AGGTCCAGGACCGGCTGCTGGAACCGCTGGATGCGAGAGAGGGAGAGCAG
GAGCGCGAGGCGGAACGGAGTGAAGGCGCGACCGACCTCCGCCGCGGCGG
CCCTCCTCTGGAAACCTTTGAGCACGCAGCTCGCAAGGCTGTGGTCCTGC
TTCATCGCGAAGTTGAAGTGCAGGAGGATGGTGCCCTCCACGAACCGGAG
CTCCTCGGTGCTGTTGGCTCCGAGCCC
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