mRNA_Ecto-sp13_S_contig16601.4737.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16601.4737.1
Unique NamemRNA_Ecto-sp13_S_contig16601.4737.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.390e-62
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 309
            +RASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLL DFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKK+
Sbjct:  115 KRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLGDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKI 217
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.040e-32
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 309
            RRASRF  I SER M  AEALYQRG++SYPRTET+ F RE D+  L+ +FR N   G Y   LLD G F WPREG  +D+AHPPIHPT SVDP +L  DE+ V
Sbjct:  132 RRASRFLRIPSERAMAAAEALYQRGVLSYPRTETDAFSRETDLAGLVGEFRGNAALGAYAAALLDGGAFEWPREGTNNDNAHPPIHPTASVDPATLHGDERGV 234
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A7S3NGU7_9STRA (DNA topoisomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGU7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.830e-26
Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDN------GGFLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 309
            +R+SR+  +SS  TM +AE+LYQRG +SYPRT+T+ FK   D+  L+   R +PR+GN+   LLD       G F WPR+G  DD AHPPIHPTKS  PN  Q A EKKV
Sbjct:  227 KRSSRWLKLSSAETMDIAESLYQRGYLSYPRTDTDIFKSSCDLRALIDLQRTDPRWGNFAAALLDTVPETAPGAFKWPRQGNRDDEAHPPIHPTKSAGPNEFQHAREKKV 336
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: D0NZ98_PHYIT (DNA topoisomerase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NZ98_PHYIT)

HSP 1 Score: 111 bits (277), Expect = 3.410e-26
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGG-LLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSL-QADEKKV 309
            +RASR+  ISSE TM  AE+LY +G+ISYPRTET KFK   D+ +L+R    + ++GNYV   LLD G +  PR G  DD AHPPIHPTKSVD N+L   DEKKV
Sbjct:  310 KRASRWLRISSEATMKAAESLYNKGLISYPRTETSKFKEGTDLMSLVRAHETHQQWGNYVTRQLLDGGKYEAPRHGNSDDQAHPPIHPTKSVDLNTLPDPDEKKV 414
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: F0XZ97_AURAN (DNA topoisomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ97_AURAN)

HSP 1 Score: 109 bits (272), Expect = 1.470e-25
Identity = 58/108 (53.70%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLD-----NGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 309
            +RASR+  + S  TM VAEALYQRG +SYPRTETE F+   D+  L+   R + RFG +   LLD        FLWPR+G  DD AHPPIHPTK+V  N LQ  E KV
Sbjct:  316 KRASRWLKLGSAETMEVAEALYQRGYVSYPRTETELFRDTCDVRELVDRQRPDGRFGTFAAQLLDLPPDDRRAFLWPRQGAKDDEAHPPIHPTKAVAANELQGKEAKV 423
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A2U1IVV6_SMIAN (DNA topoisomerase n=1 Tax=Smittium angustum TaxID=133377 RepID=A0A2U1IVV6_SMIAN)

HSP 1 Score: 108 bits (270), Expect = 2.990e-25
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   13 RFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 309
            R+  + S++TM VAE LY +G ISYPRTET+ F + FD+ +L+    ++P +G +   L++ GGF WPR G+ +D AHPPIHPT  V  N L +DEKK+
Sbjct:    7 RYLKMDSQKTMKVAEQLYNKGFISYPRTETDMFDKTFDLKSLISKQTEDPTWGGFAKKLIEGGGFEWPRNGKNNDKAHPPIHPTSYVSGNMLSSDEKKL 105
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A329SW77_9STRA (DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SW77_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.010e-25
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGG-LLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 309
            +RASR+  ISSE TM  AE+LY +G+ISYPRTET KFK   D+ +L+R    + ++GNYV   LLD G +  PR G  DD AHPPIHPTKSVD N+L   +EKKV
Sbjct:  308 KRASRWLRISSEATMKAAESLYNKGLISYPRTETSKFKEGTDLMSLVRLHETHQQWGNYVTRKLLDGGKYEAPRHGNSDDQAHPPIHPTKSVDLNTLSDPNEKKV 412
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A6A3T5P8_9STRA (DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T5P8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.010e-25
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGG-FLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 309
            +RASR+  ISSE TM  AE+LY +G ISYPRTET KFK   D+ +L+R   ++ ++GNYV   L NGG +  PR G  DD AHPPIHPTKSVD N+L   +EKKV
Sbjct:  308 KRASRWLRISSEATMKAAESLYNKGFISYPRTETSKFKEGTDLMSLVRLHENHQQWGNYVTQQLLNGGKYEAPRHGNSDDQAHPPIHPTKSVDANTLSDPNEKKV 412
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A2T9YBU5_9FUNG (DNA topoisomerase n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9YBU5_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 3.040e-25
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 1 
Query:   13 RFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 309
            R+  + S++TM VAE LY +G ISYPRTET+ F + FD+ +L+    ++P +G +   L++ GGF WPR G+ +D AHPPIHPT  V  N L +DEKK+
Sbjct:  308 RYLKMDSQKTMKVAEQLYNKGFISYPRTETDMFDKTFDLKSLISKQTEDPTWGGFAKKLIEGGGFEWPRNGKNNDKAHPPIHPTSYVSGNMLSSDEKKL 406
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BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: H3G7Y5_PHYRM (DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 RepID=H3G7Y5_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 3.770e-25
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGG-LLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 309
            +RASR+  ISSE TM  AE+LY +G ISYPRTET KFK   D+ +L+R    + ++GNYV   LLD G +  PR G  DD AHPPIHPTKS+D N+L+  +EKKV
Sbjct:  307 KRASRWLRISSEMTMKAAESLYNKGFISYPRTETSKFKEGTDLMSLVRLHETHQQWGNYVTRQLLDGGKYEAPRHGNSDDQAHPPIHPTKSIDVNTLRDPNEKKV 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI3.390e-6297.09DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YM61_9STRA2.040e-3261.17DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A7S3NGU7_9STRA1.830e-2652.73DNA topoisomerase n=1 Tax=Aureoumbra lagunensis Ta... [more]
D0NZ98_PHYIT3.410e-2658.10DNA topoisomerase n=2 Tax=Phytophthora infestans T... [more]
F0XZ97_AURAN1.470e-2553.70DNA topoisomerase (Fragment) n=1 Tax=Aureococcus a... [more]
A0A2U1IVV6_SMIAN2.990e-2548.48DNA topoisomerase n=1 Tax=Smittium angustum TaxID=... [more]
A0A329SW77_9STRA3.010e-2557.14DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 ... [more]
A0A6A3T5P8_9STRA3.010e-2557.14DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 ... [more]
A0A2T9YBU5_9FUNG3.040e-2548.48DNA topoisomerase n=1 Tax=Furculomyces boomerangus... [more]
H3G7Y5_PHYRM3.770e-2556.19DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16601contigEcto-sp13_S_contig16601:359..1330 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score212.2
Seed ortholog evalue1.2e-52
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
Model size327
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
Exons2
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
Cds size327
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462871.5071287-CDS-Ecto-sp13_S_contig16601:358..4891681462871.5071287-CDS-Ecto-sp13_S_contig16601:358..489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16601 359..489 +
1681462871.517695-CDS-Ecto-sp13_S_contig16601:1134..13301681462871.517695-CDS-Ecto-sp13_S_contig16601:1134..1330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16601 1135..1330 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16601.4737.1prot_Ecto-sp13_S_contig16601.4737.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16601 359..1330 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16601.4737.1

>prot_Ecto-sp13_S_contig16601.4737.1 ID=prot_Ecto-sp13_S_contig16601.4737.1|Name=mRNA_Ecto-sp13_S_contig16601.4737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDF
RDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADE
KKVDPHKW*
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mRNA from alignment at Ecto-sp13_S_contig16601:359..1330+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16601.4737.1 ID=mRNA_Ecto-sp13_S_contig16601.4737.1|Name=mRNA_Ecto-sp13_S_contig16601.4737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16601:359..1330+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGGGCATCGCGATTCTGCCACATCTCGTCCGAGAGAACGATGCACGT
CGCGGAGGCCTTGTACCAGAGGGGCATTATCAGCTACCCCAGGACGGAGA
CGGAGAAGTTTAAGCGGGAGTTTGACATCAAGTGAGGGCAGCCTGTGTAG
TTTGCGATGTTTATTTTTTGGCGTCCCATTTGTATAACGATGAGACTCCA
AACAAAGGGGAAATGTATCTACTTCTGCGCACTAGGCTGTGTATTGAAAA
ATTTTCCAGCGGGCAGTGTATGCCACCGCCGTTATTGCAATCCCACACCA
CGACCTGTTGCCCCCGTCAATTTTATGCGCGCTTTTGTGGCCTCCTTGAT
AACTGATCAACTGTTTCATAGCTCTCGACCCGGGTGTGCATGTGAGTTGG
GTTTCGAGACCCCCACGTCCTGGTCTACCGCTGTCACCCTGAACGCCGTC
ATCCACACTACGTCTCCTCTCGGCGGCGTTCCGCAATCACCGCCCTCTAG
CTGCGCAACACCAACACGTTTTCTCATTTGTTATTATATCAATTTTTCCG
CGCGTATTTTCATCATGTTTTTTTACGTTTCCACAACACGTGCCTTTTTT
TTCTTATTTTGCAGCGTCATTGCCCACGACCACTGCCGCTGCCACCCCCA
CATCCACCACCAGCGTCACCGCTGCATGCGTTGCCGTAGCTGTCGTTGTT
GTTGTTGTTGTTGCTGCTGCTGTTGTGTGGTTGTTGACGTGTGGTGTCCC
GACGCGTGTCCCCGCCTTATTTTCAGCACCCTGCTGCGAGACTTTCGGGA
CAATCCCCGCTTCGGAAACTACGTCGGGGGTTTGCTGGACAACGGAGGTT
TTCTGTGGCCGCGGGAGGGGAGGGGTGACGACAGCGCCCACCCCCCCATC
CACCCAACCAAGAGCGTGGACCCGAACTCCTTGCAGGCGGACGAGAAGAA
GGTGGACCCCCATAAGTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16601:359..1330+

>mRNA_Ecto-sp13_S_contig16601.4737.1 ID=mRNA_Ecto-sp13_S_contig16601.4737.1|Name=mRNA_Ecto-sp13_S_contig16601.4737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16601:359..1330+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAGGGCATCGCGATTCTGCCACATCTCGTCCGAGAGAACGATGCACGT
CGCGGAGGCCTTGTACCAGAGGGGCATTATCAGCTACCCCAGGACGGAGA
CGGAGAAGTTTAAGCGGGAGTTTGACATCAACACCCTGCTGCGAGACTTT
CGGGACAATCCCCGCTTCGGAAACTACGTCGGGGGTTTGCTGGACAACGG
AGGTTTTCTGTGGCCGCGGGAGGGGAGGGGTGACGACAGCGCCCACCCCC
CCATCCACCCAACCAAGAGCGTGGACCCGAACTCCTTGCAGGCGGACGAG
AAGAAGGTGGACCCCCATAAGTGGTAG
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