prot_Ecto-sp13_S_contig16601.4737.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16601.4737.1
Unique Nameprot_Ecto-sp13_S_contig16601.4737.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length109
Homology
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.390e-62
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 103
            +RASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLL DFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKK+
Sbjct:  115 KRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLGDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKI 217          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.040e-32
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 103
            RRASRF  I SER M  AEALYQRG++SYPRTET+ F RE D+  L+ +FR N   G Y   LLD G F WPREG  +D+AHPPIHPT SVDP +L  DE+ V
Sbjct:  132 RRASRFLRIPSERAMAAAEALYQRGVLSYPRTETDAFSRETDLAGLVGEFRGNAALGAYAAALLDGGAFEWPREGTNNDNAHPPIHPTASVDPATLHGDERGV 234          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A7S3NGU7_9STRA (DNA topoisomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NGU7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.830e-26
Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDN------GGFLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 103
            +R+SR+  +SS  TM +AE+LYQRG +SYPRT+T+ FK   D+  L+   R +PR+GN+   LLD       G F WPR+G  DD AHPPIHPTKS  PN  Q A EKKV
Sbjct:  227 KRSSRWLKLSSAETMDIAESLYQRGYLSYPRTDTDIFKSSCDLRALIDLQRTDPRWGNFAAALLDTVPETAPGAFKWPRQGNRDDEAHPPIHPTKSAGPNEFQHAREKKV 336          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: D0NZ98_PHYIT (DNA topoisomerase n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NZ98_PHYIT)

HSP 1 Score: 111 bits (277), Expect = 3.410e-26
Identity = 61/105 (58.10%), Postives = 74/105 (70.48%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGG-LLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSL-QADEKKV 103
            +RASR+  ISSE TM  AE+LY +G+ISYPRTET KFK   D+ +L+R    + ++GNYV   LLD G +  PR G  DD AHPPIHPTKSVD N+L   DEKKV
Sbjct:  310 KRASRWLRISSEATMKAAESLYNKGLISYPRTETSKFKEGTDLMSLVRAHETHQQWGNYVTRQLLDGGKYEAPRHGNSDDQAHPPIHPTKSVDLNTLPDPDEKKV 414          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: F0XZ97_AURAN (DNA topoisomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ97_AURAN)

HSP 1 Score: 109 bits (272), Expect = 1.470e-25
Identity = 58/108 (53.70%), Postives = 69/108 (63.89%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLD-----NGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 103
            +RASR+  + S  TM VAEALYQRG +SYPRTETE F+   D+  L+   R + RFG +   LLD        FLWPR+G  DD AHPPIHPTK+V  N LQ  E KV
Sbjct:  316 KRASRWLKLGSAETMEVAEALYQRGYVSYPRTETELFRDTCDVRELVDRQRPDGRFGTFAAQLLDLPPDDRRAFLWPRQGAKDDEAHPPIHPTKAVAANELQGKEAKV 423          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A2U1IVV6_SMIAN (DNA topoisomerase n=1 Tax=Smittium angustum TaxID=133377 RepID=A0A2U1IVV6_SMIAN)

HSP 1 Score: 108 bits (270), Expect = 2.990e-25
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 0
Query:    5 RFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 103
            R+  + S++TM VAE LY +G ISYPRTET+ F + FD+ +L+    ++P +G +   L++ GGF WPR G+ +D AHPPIHPT  V  N L +DEKK+
Sbjct:    7 RYLKMDSQKTMKVAEQLYNKGFISYPRTETDMFDKTFDLKSLISKQTEDPTWGGFAKKLIEGGGFEWPRNGKNNDKAHPPIHPTSYVSGNMLSSDEKKL 105          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A329SW77_9STRA (DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SW77_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.010e-25
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGG-LLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 103
            +RASR+  ISSE TM  AE+LY +G+ISYPRTET KFK   D+ +L+R    + ++GNYV   LLD G +  PR G  DD AHPPIHPTKSVD N+L   +EKKV
Sbjct:  308 KRASRWLRISSEATMKAAESLYNKGLISYPRTETSKFKEGTDLMSLVRLHETHQQWGNYVTRKLLDGGKYEAPRHGNSDDQAHPPIHPTKSVDLNTLSDPNEKKV 412          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A6A3T5P8_9STRA (DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3T5P8_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.010e-25
Identity = 60/105 (57.14%), Postives = 74/105 (70.48%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGG-FLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 103
            +RASR+  ISSE TM  AE+LY +G ISYPRTET KFK   D+ +L+R   ++ ++GNYV   L NGG +  PR G  DD AHPPIHPTKSVD N+L   +EKKV
Sbjct:  308 KRASRWLRISSEATMKAAESLYNKGFISYPRTETSKFKEGTDLMSLVRLHENHQQWGNYVTQQLLNGGKYEAPRHGNSDDQAHPPIHPTKSVDANTLSDPNEKKV 412          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: A0A2T9YBU5_9FUNG (DNA topoisomerase n=1 Tax=Furculomyces boomerangus TaxID=61424 RepID=A0A2T9YBU5_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 3.040e-25
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 0
Query:    5 RFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADEKKV 103
            R+  + S++TM VAE LY +G ISYPRTET+ F + FD+ +L+    ++P +G +   L++ GGF WPR G+ +D AHPPIHPT  V  N L +DEKK+
Sbjct:  308 RYLKMDSQKTMKVAEQLYNKGFISYPRTETDMFDKTFDLKSLISKQTEDPTWGGFAKKLIEGGGFEWPRNGKNNDKAHPPIHPTSYVSGNMLSSDEKKL 406          
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Match: H3G7Y5_PHYRM (DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 RepID=H3G7Y5_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 3.770e-25
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 0
Query:    1 RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDFRDNPRFGNYVGG-LLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQ-ADEKKV 103
            +RASR+  ISSE TM  AE+LY +G ISYPRTET KFK   D+ +L+R    + ++GNYV   LLD G +  PR G  DD AHPPIHPTKS+D N+L+  +EKKV
Sbjct:  307 KRASRWLRISSEMTMKAAESLYNKGFISYPRTETSKFKEGTDLMSLVRLHETHQQWGNYVTRQLLDGGKYEAPRHGNSDDQAHPPIHPTKSIDVNTLRDPNEKKV 411          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16601.4737.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI3.390e-6297.09DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YM61_9STRA2.040e-3261.17DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A7S3NGU7_9STRA1.830e-2652.73DNA topoisomerase n=1 Tax=Aureoumbra lagunensis Ta... [more]
D0NZ98_PHYIT3.410e-2658.10DNA topoisomerase n=2 Tax=Phytophthora infestans T... [more]
F0XZ97_AURAN1.470e-2553.70DNA topoisomerase (Fragment) n=1 Tax=Aureococcus a... [more]
A0A2U1IVV6_SMIAN2.990e-2548.48DNA topoisomerase n=1 Tax=Smittium angustum TaxID=... [more]
A0A329SW77_9STRA3.010e-2557.14DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 ... [more]
A0A6A3T5P8_9STRA3.010e-2557.14DNA topoisomerase n=4 Tax=Phytophthora TaxID=4783 ... [more]
A0A2T9YBU5_9FUNG3.040e-2548.48DNA topoisomerase n=1 Tax=Furculomyces boomerangus... [more]
H3G7Y5_PHYRM3.770e-2556.19DNA topoisomerase n=2 Tax=Phytophthora TaxID=4783 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 2..103
e-value: 2.1E-19
score: 69.9
IPR013826DNA topoisomerase, type IA, central region, subdomain 3GENE3D1.10.290.10coord: 2..103
e-value: 1.2E-31
score: 111.6
NoneNo IPR availablePANTHERPTHR11390:SF21DNA TOPOISOMERASE 3-ALPHAcoord: 1..103
IPR000380DNA topoisomerase, type IAPANTHERPTHR11390PROKARYOTIC DNA TOPOISOMERASEcoord: 1..103
IPR023406DNA topoisomerase, type IA, active sitePROSITEPS00396TOPOISOMERASE_I_PROKcoord: 19..33
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 2..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16601contigEcto-sp13_S_contig16601:359..1330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16601.4737.1mRNA_Ecto-sp13_S_contig16601.4737.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16601 359..1330 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16601.4737.1 ID=prot_Ecto-sp13_S_contig16601.4737.1|Name=mRNA_Ecto-sp13_S_contig16601.4737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
RRASRFCHISSERTMHVAEALYQRGIISYPRTETEKFKREFDINTLLRDF
RDNPRFGNYVGGLLDNGGFLWPREGRGDDSAHPPIHPTKSVDPNSLQADE
KKVDPHKW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013497Topo_IA_cen
IPR013826Topo_IA_cen_sub3
IPR000380Topo_IA
IPR023406Topo_IA_AS
IPR023405Topo_IA_core_domain