mRNA_Ecto-sp13_S_contig10498.471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10498.471.1
Unique NamemRNA_Ecto-sp13_S_contig10498.471.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: D7FU47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU47_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.660e-52
Identity = 95/112 (84.82%), Postives = 96/112 (85.71%), Query Frame = 1
Query:  163 MSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAV----------GALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            MSITLEEALLLAET SQQSPPRD EFGVEGPA  VAAA A           GALADANVLRA+GARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS
Sbjct:    1 MSITLEEALLLAETASQQSPPRDGEFGVEGPAVTVAAAAAASGGWRAAERSGALADANVLRAHGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 112          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A1V9ZK10_9STRA (Inositol-3,4-bisphosphate 4-phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZK10_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.190e-37
Identity = 80/149 (53.69%), Postives = 104/149 (69.80%), Query Frame = 1
Query:   22 LSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAVGALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            L  L  AV+ +  A KNT ILLEA  AVRR+ GGRVT+CKSGKDRTAMS+TL++A LL +  +  +P     F V  P  A    V+   LA AN++R +G R++VA+KN+GRP YSFNALQR+ +PE+Y+PP  TIQD++TS   RDS
Sbjct:  983 LDPLMAAVQAENAAAKNTRILLEASDAVRRMNGGRVTYCKSGKDRTAMSVTLDQARLLFKRQASANP-----FLVTSPTHAPTDMVSADELAAANIMREHGVRIVVAKKNVGRPKYSFNALQRKLLPEIYRPPTSTIQDMVTSVTARDS 1126          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: T0QHN7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QHN7_SAPDV)

HSP 1 Score: 144 bits (362), Expect = 7.630e-37
Identity = 79/149 (53.02%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   22 LSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAVGALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            L  L   V+ +  A KNT ILLEA  AVRR+ GGRVT+CKSGKDRTAMS+TL++A +L +  + Q+P     F V  P  A    V+   LA AN++R YG R+ VA+KN+GRP YSFN++QR+ +PELY+PP  TIQD++TS   RDS
Sbjct:  994 LDPLMAVVQAENAAAKNTRILLEASDAVRRMNGGRVTYCKSGKDRTAMSVTLDQARVLFKRANVQNP-----FLVTSPTHASQEMVSSDELAAANLMREYGVRIAVAKKNVGRPKYSFNSIQRKLLPELYRPPTSTIQDMVTSVTARDS 1137          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A835ZA41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA41_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.070e-36
Identity = 87/152 (57.24%), Postives = 101/152 (66.45%), Query Frame = 1
Query:   13 HPALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAVGALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            H  L  LE AV   +   KNTA+LLE++ AV+ L GGRVTFCKSGKDRTAMS+TLEE+ +L +             GV G A A         L  ANVLRA+G R+ VAEKNIG PLYSFNA+QRQFIPELY+ P QTIQDV+TS   RDS
Sbjct: 1423 HMHLLRLEAAVMAQQHNQKNTAVLLESERAVQLLGGGRVTFCKSGKDRTAMSVTLEESFMLLDKHLD---------GVGGEARA---------LRVANVLRAHGTRIAVAEKNIGSPLYSFNAIQRQFIPELYRAPVQTIQDVLTSFQKRDS 1556          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A397A4G3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A4G3_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.570e-32
Identity = 74/158 (46.84%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   13 HPALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSP------PRDSEFGVEGPAGAVAAAVAVGALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            H  L  L   V+ +  A KNT ILLEA   VRRL GGRVT+CKSGKDRTAMS+TLE+A LL +  S  +P            G E              L  AN++R +G R+ +A KN+GR  YSFNA+QR+ +P++Y+PP  TIQD++TS   RDS
Sbjct:  339 HLLLDPLMAVVQSENAAAKNTRILLEASDVVRRLRGGRVTYCKSGKDRTAMSVTLEQARLLFKRVSGVNPLHLLGATEQLNIGAE-------------ELHAANIMREFGIRIEIANKNVGRYKYSFNAIQRKMLPDIYRPPMSTIQDIVTSVTARDS 483          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A7S3Y7E2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7E2_HETAK)

HSP 1 Score: 121 bits (304), Expect = 2.140e-32
Identity = 72/152 (47.37%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   13 HPALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAVGALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            H  L  L  AV     + KN  ILLEA+ A  RL GGR TFCKSGKDRTAM+ TLE+A+LL +      P    +F                 L  AN++RA G RL  A KN+GRP YSFN+ QRQF+P +Y+PP + I D+ITS L+RD+
Sbjct:   14 HFLLEGLARAVEAQSTSEKNVDILLEAERAAYRLGGGRCTFCKSGKDRTAMAATLEQAVLLEQ---HLGPGAGRDFDA--------------ILQRANLMRARGVRLANAHKNVGRPKYSFNSFQRQFMPAIYKPPIEVIDDMITSTLHRDT 148          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A397AYA6_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AYA6_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.270e-32
Identity = 74/158 (46.84%), Postives = 95/158 (60.13%), Query Frame = 1
Query:   13 HPALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSP------PRDSEFGVEGPAGAVAAAVAVGALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            H  L  L   V+ +  A KNT ILLEA   VRRL GGRVT+CKSGKDRTAMS+TLE+A LL +  S  +P            G E              L  AN++R +G R+ +A KN+GR  YSFNA+QR+ +P++Y+PP  TIQD++TS   RDS
Sbjct: 1010 HLLLDPLMAVVQSENAAAKNTRILLEASDVVRRLRGGRVTYCKSGKDRTAMSVTLEQARLLFKRVSGVNPLHLLGATEQLNIGAE-------------ELHAANIMREFGIRIEIANKNVGRYKYSFNAIQRKMLPDIYRPPMSTIQDIVTSVTARDS 1154          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A024U4Q3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4Q3_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.350e-31
Identity = 74/158 (46.84%), Postives = 96/158 (60.76%), Query Frame = 1
Query:   13 HPALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSP------PRDSEFGVEGPAGAVAAAVAVGALADANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            H  L  L   V+ +  A KNT ILLEA   VRRL GGRVT+CKSGKDRTAMS+TLE+A LL +  S  +P            G E              L  AN++R +G R+ +A+KN+GR  YSFNA+QR+ +P++Y+PP  TIQD++TS   RDS
Sbjct:  990 HLLLDPLMAVVQSENAAAKNTRILLEAADVVRRLRGGRVTYCKSGKDRTAMSVTLEQARLLFKRVSGVNPLHLMGATEQLSIGPE-------------ELQAANLMREFGIRIKIAKKNVGRYKYSFNAIQRKMLPDIYRPPVSTIQDIVTSVTARDS 1134          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A5D6YDX5_9STRA (Phosphatidylinositol-3,4-bisphosphate 4-phosphatase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDX5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.370e-31
Identity = 81/154 (52.60%), Postives = 101/154 (65.58%), Query Frame = 1
Query:   19 ALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAVGALAD----ANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            +L  L  +V  +  + KNT ILL A  AVR L GGR+TFCKSGKDRTAMS+TLE+A  L +   Q+      E G  G AGA   A A G L +    ANVLRA+G R+ +A KN+GR  YSFNALQR+ +PE+Y+PP  TIQD++TS   RDS
Sbjct: 1233 SLRHLRVSVEGESSSAKNTCILLHASDAVRSLRGGRLTFCKSGKDRTAMSVTLEQARRLVQR--QRHVLEAIEAG--GGAGAPTTAAA-GPLDEVQSVANVLRAFGVRMAIAHKNVGRFQYSFNALQRKLLPEIYRPPVATIQDMVTSVTARDS 1381          
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Match: A0A6G0XWA4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWA4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.830e-31
Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   13 HPALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRTAMSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAVGALAD----ANVLRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALNRDS 468
            H  L  L   V+ +  A KNT ILLEA   VRRL GGRVT+CKSGKDRTAMS+TLE+A LL +  S  +P              + A   +   AD    AN++R +G R+ +A+KN+GR  YSFNALQR+ +P++Y+PP  TIQD++TS   RDS
Sbjct:  948 HLLLDPLMAVVQSENAASKNTRILLEASDVVRRLNGGRVTYCKSGKDRTAMSVTLEQARLLFKRVSGVNPLH-----------LLGATEQLNISADELNAANLMREFGIRIKIAKKNVGRFKYSFNALQRKMLPDIYRPPVSTIQDMVTSVTARDS 1092          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10498.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU47_ECTSI3.660e-5284.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9ZK10_9STRA1.190e-3753.69Inositol-3,4-bisphosphate 4-phosphatase n=1 Tax=Ac... [more]
T0QHN7_SAPDV7.630e-3753.02Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A835ZA41_9STRA1.070e-3657.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A397A4G3_9STRA1.570e-3246.84Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S3Y7E2_HETAK2.140e-3247.37Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A397AYA6_9STRA7.270e-3246.84Uncharacterized protein n=13 Tax=Aphanomyces astac... [more]
A0A024U4Q3_9STRA1.350e-3146.84Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A5D6YDX5_9STRA1.370e-3152.60Phosphatidylinositol-3,4-bisphosphate 4-phosphatas... [more]
A0A6G0XWA4_9STRA1.830e-3148.08Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10498contigEcto-sp13_S_contig10498:3939..5114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score147.5
Seed ortholog evalue5.1e-33
Seed eggNOG ortholog112098.XP_008613333.1
Model size471
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity
EggNOG OGsKOG4428@1,KOG4428@2759
Cds size462
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462534.7544277-UTR-Ecto-sp13_S_contig10498:3938..39471681462534.7544277-UTR-Ecto-sp13_S_contig10498:3938..3947Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10498 3939..3947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462534.7657788-CDS-Ecto-sp13_S_contig10498:3947..40881681462534.7657788-CDS-Ecto-sp13_S_contig10498:3947..4088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10498 3948..4088 +
1681462534.774938-CDS-Ecto-sp13_S_contig10498:4763..48971681462534.774938-CDS-Ecto-sp13_S_contig10498:4763..4897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10498 4764..4897 +
1681462534.7843177-CDS-Ecto-sp13_S_contig10498:4927..51141681462534.7843177-CDS-Ecto-sp13_S_contig10498:4927..5114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10498 4928..5114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10498.471.1prot_Ecto-sp13_S_contig10498.471.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10498 3948..5114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10498.471.1

>prot_Ecto-sp13_S_contig10498.471.1 ID=prot_Ecto-sp13_S_contig10498.471.1|Name=mRNA_Ecto-sp13_S_contig10498.471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MHPALSELETAVRDDKVAHKNTAILLEAQVAVRRLCGGRVTFCKSGKDRT
AMSITLEEALLLAETTSQQSPPRDSEFGVEGPAGAVAAAVAVGALADANV
LRAYGARLLVAEKNIGRPLYSFNALQRQFIPELYQPPPQTIQDVITSALN
RDS*
back to top

mRNA from alignment at Ecto-sp13_S_contig10498:3939..5114+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10498.471.1 ID=mRNA_Ecto-sp13_S_contig10498.471.1|Name=mRNA_Ecto-sp13_S_contig10498.471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1176bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10498:3939..5114+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGTGGATGCACCCCGCTCTGTCGGAGCTGGAGACAGCTGTCCGAGA CGATAAGGTGGCCCACAAGAACACTGCTATCCTACTAGAGGCGCAGGTGG CGGTGCGGCGGCTGTGCGGCGGAAGGGTAACATTCTGCAAGTCCGGCAAG GTGTGTACGTGCGTGGCAGCTATGCGTGTGGCGTGTGGTGATCCGTATTT TTGGTCGGTTGTGACGACGGGCGCCAGCTGCTTTTGTCTTGAGGCGGGGG CGCATTTCTGGATAAATGTCAGGATGAATGATGTCACATGAAGAGCACAA ACAACAGCGACAGGGATGCGGAAGACGGTCAAGGTCCTCCACCGTCGGTG ATCTGATACATGAGTGGTGATGGCGTTGTTGCTTCGGCCGTCTTGAGAGG CGTGGCTGTGCCATTAAGTTTGTGGGGGTTTCCTTTAAGTAGGTTGTGTG TGAAAATGTCTTGAACGTTCTTGTGTTGGCCTAACAACTCCTCCCAAAAA TCGACGTTTAGAGAACAAGCGGCGAGTTACTTGCTACCCGCGGCGACCAT GATCATCTCGTTTCTCTCCTGCAACCGGCAACGGCATACAACTTCGAAGC ACCACCTTTCACCTCCCCCCCAAATACACACACGTCCGCCTGAGATGATC AATGGTCGAACAACTACGGCTTCAAAAGATGAGTTGTAGCAACTTAATAC GGGTTCAAAAGATGAGTTGTAACACCCCCACCTTATTTTGCATGGGTCAA TGGTCTAATCGCGAAGGCATGCAAAACATGAGCAACTCCCCCTCCCCCAC CCCTCACCCCCCTACCCCCCTTCAGGACCGAACGGCGATGTCCATCACTC TCGAAGAGGCGCTCCTCTTAGCGGAGACAACGTCGCAGCAATCCCCACCC CGAGATAGCGAATTCGGGGTCGAGGGGCCCGCCGGGGCGGTAGCAGCAGC AGTGGCAGTGTCGGGGGGGTGGAGAGCAGCCGAGAGGAGCGGAGCTTTGG CGGACGCGAACGTTTTGCGTGCGTACGGGGCCCGGCTGCTGGTGGCGGAG AAGAACATCGGGCGCCCGCTTTACTCGTTCAACGCCCTGCAGCGGCAGTT TATTCCGGAGCTGTACCAGCCCCCGCCGCAGACCATACAGGACGTCATCA CGTCCGCGCTCAACCGCGATTCTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10498:3939..5114+

>mRNA_Ecto-sp13_S_contig10498.471.1 ID=mRNA_Ecto-sp13_S_contig10498.471.1|Name=mRNA_Ecto-sp13_S_contig10498.471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10498:3939..5114+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCCCGCTCTGTCGGAGCTGGAGACAGCTGTCCGAGACGATAAGGT
GGCCCACAAGAACACTGCTATCCTACTAGAGGCGCAGGTGGCGGTGCGGC
GGCTGTGCGGCGGAAGGGTAACATTCTGCAAGTCCGGCAAGGACCGAACG
GCGATGTCCATCACTCTCGAAGAGGCGCTCCTCTTAGCGGAGACAACGTC
GCAGCAATCCCCACCCCGAGATAGCGAATTCGGGGTCGAGGGGCCCGCCG
GGGCGGTAGCAGCAGCAGTGGCAGTCGGAGCTTTGGCGGACGCGAACGTT
TTGCGTGCGTACGGGGCCCGGCTGCTGGTGGCGGAGAAGAACATCGGGCG
CCCGCTTTACTCGTTCAACGCCCTGCAGCGGCAGTTTATTCCGGAGCTGT
ACCAGCCCCCGCCGCAGACCATACAGGACGTCATCACGTCCGCGCTCAAC
CGCGATTCTTGA
back to top