mRNA_Ecto-sp13_S_contig16549.4707.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16549.4707.1
Unique NamemRNA_Ecto-sp13_S_contig16549.4707.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 389 bits (999), Expect = 3.340e-121
Identity = 210/234 (89.74%), Postives = 219/234 (93.59%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSLAAPPSPSSASP--SDAALIAATDGNSPENEESST-PRDAQSSILSRIIAFN 693
            QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQ+GQ  EG  G +ARFSWCDGVFLSALKAG+WVLLDELNLATQ VLEGLNACLDHRAEVYIPELGRSFKCP TFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPL+PDDLLYIAVNKFPSLAAPPSPSS SP  SDAALIAATDGNS +NE+SS  P DA +S+LSR+IAFN
Sbjct: 1275 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQTGQPTEGSAGNNARFSWCDGVFLSALKAGRWVLLDELNLATQSVLEGLNACLDHRAEVYIPELGRSFKCPPTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLTPDDLLYIAVNKFPSLAAPPSPSS-SPVSSDAALIAATDGNSQDNEKSSCIPCDA-ASMLSRMIAFN 1506          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 4.400e-89
Identity = 150/162 (92.59%), Postives = 152/162 (93.83%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKV 486
            QIRKAVLLEGSPGVGKTSLISALAAA GHELVRINLSEQTDVSDLFGSDLPVP TDSGE SGQQ EG G  SARF+WCDGVFLSALKAGKWVLLDELNLA Q VLEGLNACLDHRAEVYIPELGRSF+CP TFKVFAAQNPLGQGGGRKGLPRSFLSRFTKV
Sbjct:   93 QIRKAVLLEGSPGVGKTSLISALAAAAGHELVRINLSEQTDVSDLFGSDLPVPGTDSGELSGQQTEGSGATSARFTWCDGVFLSALKAGKWVLLDELNLAPQSVLEGLNACLDHRAEVYIPELGRSFRCPPTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKV 254          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 264 bits (674), Expect = 1.500e-77
Identity = 131/184 (71.20%), Postives = 152/184 (82.61%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSLA 552
            Q+RKAVLLEGSPGVGKT+L++ALAAA GH LVRINLSEQTD+SDL GSDLPV  +D                  F+WCDGVFL AL+AG WVLLDELNLA+Q VLEGLNACLDHRAEV++PELGR+F+CP TF+VFAAQNPL QGGGRKGLP+SFL+RFTKV+VD L PDDL++IA  +FP+LA
Sbjct: 1416 QLRKAVLLEGSPGVGKTALVTALAAAAGHPLVRINLSEQTDLSDLMGSDLPVAASDXXXXXXXXX------GPAFAWCDGVFLRALRAGHWVLLDELNLASQAVLEGLNACLDHRAEVFVPELGRAFRCPPTFRVFAAQNPLSQGGGRKGLPKSFLNRFTKVFVDALGPDDLMHIASGRFPALA 1593          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: A0A662XM65_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XM65_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.010e-76
Identity = 128/186 (68.82%), Postives = 154/186 (82.80%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSLAAP 558
            Q+ + ++LEGSPGVGKTSLISALAAA+GH LVRINLSEQTD+SDLFGSDLP   + + ++  +Q +GG  +S  F WCDGVFL ALKAG WVLLDELNLA+Q VLEGLN+CLDHR  VYIPEL R F+CPSTF+VFAAQNPL QGGGRKGLP+SFL+RFT+V+V+ L   DL++IA + +PSL  P
Sbjct:  882 QVSRPIILEGSPGVGKTSLISALAAASGHRLVRINLSEQTDISDLFGSDLPAASSSTNDEGKEQADGGN-SSGMFEWCDGVFLRALKAGDWVLLDELNLASQSVLEGLNSCLDHRGSVYIPELDREFECPSTFRVFAAQNPLRQGGGRKGLPKSFLNRFTRVFVETLHEQDLIHIASSMYPSLHRP 1066          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: G4ZMS6_PHYSP (VWFA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZMS6_PHYSP)

HSP 1 Score: 259 bits (662), Expect = 6.510e-76
Identity = 138/233 (59.23%), Postives = 168/233 (72.10%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPD--TDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSLAAPPSPSSASPSDAALIAATDGNSPENEESSTPRDAQSSILSRIIAFN 693
            Q+ + ++LEGSPGVGKTSLISALAAA+GH LVRINLSEQTD+SDLFGSDLP     TD  + +  +   GGG+S  F WCDGVFL ALKAG WVLLDELNLA+Q VLEGLN+CLDHR  VYIPEL R F+CP TF+VFAAQNPL QGGGRKGLP+SFL+RFT+V+V+ L   DL++IA + +P+L    + +  S SD+AL+  T                   +L R+I FN
Sbjct: 1914 QVSRPIILEGSPGVGKTSLISALAAASGHRLVRINLSEQTDISDLFGSDLPAASSPTDETDDNSSKPSQGGGSSGMFEWCDGVFLRALKAGDWVLLDELNLASQSVLEGLNSCLDHRGSVYIPELDREFECPPTFRVFAAQNPLRQGGGRKGLPKSFLNRFTRVFVETLHEQDLIHIASSMYPTLHC--AVTETSMSDSALVGQT-------------------LLERMIGFN 2125          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: D0NH58_PHYIT (Midasin n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NH58_PHYIT)

HSP 1 Score: 258 bits (660), Expect = 1.210e-75
Identity = 126/183 (68.85%), Postives = 151/183 (82.51%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSL 549
            Q+ + ++LEGSPGVGKTSLISALAAA+GH LVRINLSEQTD+SDLFGSDLP   +   ++ G +  GGG +S  F WCDGVFL ALKAG WVLLDELNLA+Q VLEGLN+CLDHR  VYIPEL R F+CP TF+VFAAQNPL QGGGRKGLP+SFL+RFT+V+V+ L   DL++IA + +P+L
Sbjct: 1909 QVSRPIILEGSPGVGKTSLISALAAASGHRLVRINLSEQTDISDLFGSDLPAASSPDEDKDGNKANGGG-SSGMFEWCDGVFLRALKAGDWVLLDELNLASQSVLEGLNSCLDHRGSVYIPELDREFECPPTFRVFAAQNPLRQGGGRKGLPKSFLNRFTRVFVETLHEQDLIHIASSMYPTL 2090          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: W2Q5P2_PHYPN (VWFA domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2Q5P2_PHYPN)

HSP 1 Score: 258 bits (658), Expect = 2.240e-75
Identity = 141/234 (60.26%), Postives = 167/234 (71.37%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPV---PDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSLAAPPSPSSASPSDAALIAATDGNSPENEESSTPRDAQSSILSRIIAFN 693
            Q+ + ++LEGSPGVGKTSLISALAAA+GH LVRINLSEQTD+SDLFGSDLP    PD +  ++ G+   GG  +S  F WCDGVFL ALKAG WVLLDELNLA+Q VLEGLN+CLDHR  VYIPEL R F+CP TF+VFAAQNPL QGGGRKGLP+SFL+RFT+V+V+ L   DL++IA + +P+L    S   A  SDAAL   T                   +L RII FN
Sbjct: 1919 QVSRPIILEGSPGVGKTSLISALAAASGHRLVRINLSEQTDISDLFGSDLPAASSPDDNVDDKDGKHTNGGS-SSGMFEWCDGVFLRALKAGDWVLLDELNLASQSVLEGLNSCLDHRGSVYIPELDREFECPPTFRVFAAQNPLRQGGGRKGLPKSFLNRFTRVFVETLHEQDLIHIASSMYPTLHC--SVEEADMSDAALSGKT-------------------LLERIIGFN 2130          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: A0A6A3UTY1_9STRA (Midasin n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UTY1_9STRA)

HSP 1 Score: 257 bits (657), Expect = 3.060e-75
Identity = 139/234 (59.40%), Postives = 170/234 (72.65%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPV---PDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSLAAPPSPSSASPSDAALIAATDGNSPENEESSTPRDAQSSILSRIIAFN 693
            Q+ + ++LEGSPGVGKTSLISALAAA+GH LVRINLSEQTD+SDLFGSDLP    P  D+ ++ G+  + GG AS  F WCDGVFL ALKAG WVLLDELNLA+Q VLEGLN+CLDHR  VYIPEL R F+CP TF+VFAAQNPL QGGGRKGLP+SFL+RFT+V+V+ L   DL++IA + +P+L    + +  S SD+AL+  T                   +L R+I FN
Sbjct: 1939 QVSRPIILEGSPGVGKTSLISALAAASGHRLVRINLSEQTDISDLFGSDLPAASSPADDTDDKGGKASQEGG-ASGMFEWCDGVFLRALKAGDWVLLDELNLASQSVLEGLNSCLDHRGSVYIPELDREFECPPTFRVFAAQNPLRQGGGRKGLPKSFLNRFTRVFVETLHEQDLIHIASSMYPTLHC--AVTETSMSDSALVGQT-------------------LLERMIGFN 2150          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: A0A7R9VCY6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VCY6_9STRA)

HSP 1 Score: 234 bits (598), Expect = 8.130e-75
Identity = 112/165 (67.88%), Postives = 138/165 (83.64%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPVPDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVD 495
            Q++K +LLEGSPGVGKTSLISALA+ +GH+LVRINLSEQTD+SDL G+DLP+PD  S ++  + +     +   F WCDGV L A+K G WVLLDELNLA+Q VLEGLN+CLDHRA ++IPELG++F CP TF++FAAQNPL QGGGRKGLP+SFL+RFTKVYV+
Sbjct:   57 QLKKPILLEGSPGVGKTSLISALASVSGHKLVRINLSEQTDISDLMGTDLPLPDESSYDE--ESVTETSPSKGNFRWCDGVLLKAIKRGDWVLLDELNLASQSVLEGLNSCLDHRANLFIPELGQTFDCPRTFRIFAAQNPLAQGGGRKGLPKSFLNRFTKVYVE 219          
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Match: A0A225WMG0_9STRA (Midasin-like protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMG0_9STRA)

HSP 1 Score: 256 bits (653), Expect = 1.050e-74
Identity = 128/186 (68.82%), Postives = 150/186 (80.65%), Query Frame = 1
Query:    1 QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDLPV---PDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLATQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKGLPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSL 549
            Q+ + ++LEGSPGVGKTSLISALAAA+GH LVRINLSEQTD+SDLFGSDLP    P  D G  +G+      GA + F WCDGVFL ALKAG WVLLDELNLA+Q VLEGLN+CLDHR  VYIPEL R F+CPSTF+VFAAQNPL QGGGRKGLP+SFL+RFT+V+V+ L   DL++IA + +P L
Sbjct: 1885 QVSRPIILEGSPGVGKTSLISALAAASGHRLVRINLSEQTDISDLFGSDLPAASSPGDDEGNNAGEDE----GARSMFEWCDGVFLRALKAGDWVLLDELNLASQSVLEGLNSCLDHRGSVYIPELDREFECPSTFRVFAAQNPLRQGGGRKGLPKSFLNRFTRVFVETLHEQDLIHIASSMYPRL 2066          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16549.4707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL28_ECTSI3.340e-12189.74Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE4.400e-8992.59Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
A0A835Z947_9STRA1.500e-7771.20P-loop containing nucleoside triphosphate hydrolas... [more]
A0A662XM65_9STRA1.010e-7668.82Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
G4ZMS6_PHYSP6.510e-7659.23VWFA domain-containing protein n=8 Tax=Phytophthor... [more]
D0NH58_PHYIT1.210e-7568.85Midasin n=2 Tax=Phytophthora infestans TaxID=4787 ... [more]
W2Q5P2_PHYPN2.240e-7560.26VWFA domain-containing protein n=9 Tax=Phytophthor... [more]
A0A6A3UTY1_9STRA3.060e-7559.40Midasin n=6 Tax=Phytophthora fragariae TaxID=53985... [more]
A0A7R9VCY6_9STRA8.130e-7567.88Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A225WMG0_9STRA1.050e-7468.82Midasin-like protein n=1 Tax=Phytophthora megakary... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16549contigEcto-sp13_S_contig16549:2054..3588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score391.0
Seed ortholog evalue4e-106
Seed eggNOG ortholog2880.D7FL28
Model size695
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
Cds size693
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462869.368766-CDS-Ecto-sp13_S_contig16549:2053..21431681462869.368766-CDS-Ecto-sp13_S_contig16549:2053..2143Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16549 2054..2143 +
1681462869.379136-CDS-Ecto-sp13_S_contig16549:2413..26311681462869.379136-CDS-Ecto-sp13_S_contig16549:2413..2631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16549 2414..2631 +
1681462869.3870838-CDS-Ecto-sp13_S_contig16549:2954..31291681462869.3870838-CDS-Ecto-sp13_S_contig16549:2954..3129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16549 2955..3129 +
1681462869.3953764-CDS-Ecto-sp13_S_contig16549:3376..35861681462869.3953764-CDS-Ecto-sp13_S_contig16549:3376..3586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16549 3377..3586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16549.4707.1prot_Ecto-sp13_S_contig16549.4707.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16549 2054..3586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16549.4707.1

>prot_Ecto-sp13_S_contig16549.4707.1 ID=prot_Ecto-sp13_S_contig16549.4707.1|Name=mRNA_Ecto-sp13_S_contig16549.4707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
QIRKAVLLEGSPGVGKTSLISALAAATGHELVRINLSEQTDVSDLFGSDL
PVPDTDSGEQSGQQMEGGGGASARFSWCDGVFLSALKAGKWVLLDELNLA
TQVVLEGLNACLDHRAEVYIPELGRSFKCPSTFKVFAAQNPLGQGGGRKG
LPRSFLSRFTKVYVDPLSPDDLLYIAVNKFPSLAAPPSPSSASPSDAALI
AATDGNSPENEESSTPRDAQSSILSRIIAFN
back to top

mRNA from alignment at Ecto-sp13_S_contig16549:2054..3588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16549.4707.1 ID=mRNA_Ecto-sp13_S_contig16549.4707.1|Name=mRNA_Ecto-sp13_S_contig16549.4707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16549:2054..3588+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATACGAAAGGCAGTCCTCCTGGAGGGCAGCCCTGGTGTAGGAAAGAC GAGCCTAATCTCGGCGCTGGCAGCGGCAACGGGACACGAGGTGCTGATTC GAACATATTTTCGGATGTTGCATGAATCGCTGAAAACAACAACAGCAGGT TGTAGGAGGTTCACCTCCCCTCCCCCCCCCCCGCGACAGACGGGTTGTGA AATTCAACCTCACCGTGCACATACATCTATGATGTGCGCTTTGAATTCCG CAAAACCTGCCCAGCGACTTTTGATTTGCCTAGGTGAGGTAGTCCATCGC AATGTAATCAGTTTCCCGAATTCGCCTTTACTCGGGTCGATCTGTTTGTT TCTTCTCAAGCTTGTGCGGATCAATCTCTCCGAGCAAACGGACGTGTCCG ATCTGTTCGGCTCGGACCTTCCGGTCCCTGATACGGACTCGGGCGAACAG AGTGGCCAACAGATGGAAGGAGGAGGCGGAGCTAGCGCTCGGTTTTCTTG GTGCGACGGGGTGTTCCTGAGCGCGCTGAAGGCCGGCAAATGGGTTCTGC TCGACGAGCTTAACTTGGCTACCCAGGTGTGCTCTTTATTTTTGGTGCAA CTTTGATGATTATATACGTTTTTTTGTTTGCCTGTGTTCCATAGTCGTCC GATTCCAATCCGCCCTCGTATGTACAACAGTCGTCTCATCATTTGTAGAT CAAAACGCTTGGGAAGGGGTTCGTATCAACAGTGCCTTGCCGTCGTGTCA ACAAGGAAGTGAGCTCGCGGCCGCAGCGTTTGCTCGGTTTTCACGGGTAC TGCAAGGCTCGCTGCCTGAACCACAGCCGTCAATGATCCGAATGATTGTT CGAGTTACTTTTCTGTTACCTGTTTCTTGTCGTGTTCCGGGATCCGCAGA GTGTGCTCGAGGGCCTTAACGCGTGCCTGGATCACCGCGCCGAGGTGTAC ATCCCTGAGCTCGGGCGTTCGTTCAAATGTCCTTCGACGTTCAAGGTGTT CGCGGCGCAGAATCCTCTAGGACAGGGTGGTGGCAGGAAGGGTCTTCCTA GATCTTTCCTTAGCCGCTTTACCAAGGTAAGTTTTACTAGTCGACTTTTG AAGAGTATCTTGTTGACCGTACAAAATACACTTGGGTTATCAGGGCGTGG TGAGTCTCCTGGGTTTCCTTGCACGTTTTGACGCACGAAACGTTCTTGTT TTAATTTGCAACCCCGCAGCAGCACCTCATACCCCTCCTTGTGTGTTTTT CCAATGCCCAATGAGTATCGCATCTACTGCTCAATATCTCTTCGGGCAAC GCTTTGTTTTTCTGTGTCGACAGGTGTATGTTGATCCACTTTCGCCGGAC GATCTGTTGTACATTGCGGTCAACAAGTTTCCTTCCCTCGCAGCACCGCC ATCGCCATCATCAGCATCACCATCCGACGCTGCTCTGATTGCGGCCACGG ACGGCAACAGTCCGGAGAACGAGGAGTCATCTACTCCTCGCGATGCGCAA TCGTCTATTCTCTCCCGCATAATCGCGTTCAATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16549:2054..3588+

>mRNA_Ecto-sp13_S_contig16549.4707.1 ID=mRNA_Ecto-sp13_S_contig16549.4707.1|Name=mRNA_Ecto-sp13_S_contig16549.4707.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16549:2054..3588+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATACGAAAGGCAGTCCTCCTGGAGGGCAGCCCTGGTGTAGGAAAGAC
GAGCCTAATCTCGGCGCTGGCAGCGGCAACGGGACACGAGCTTGTGCGGA
TCAATCTCTCCGAGCAAACGGACGTGTCCGATCTGTTCGGCTCGGACCTT
CCGGTCCCTGATACGGACTCGGGCGAACAGAGTGGCCAACAGATGGAAGG
AGGAGGCGGAGCTAGCGCTCGGTTTTCTTGGTGCGACGGGGTGTTCCTGA
GCGCGCTGAAGGCCGGCAAATGGGTTCTGCTCGACGAGCTTAACTTGGCT
ACCCAGGTTGTGCTCGAGGGCCTTAACGCGTGCCTGGATCACCGCGCCGA
GGTGTACATCCCTGAGCTCGGGCGTTCGTTCAAATGTCCTTCGACGTTCA
AGGTGTTCGCGGCGCAGAATCCTCTAGGACAGGGTGGTGGCAGGAAGGGT
CTTCCTAGATCTTTCCTTAGCCGCTTTACCAAGGTGTATGTTGATCCACT
TTCGCCGGACGATCTGTTGTACATTGCGGTCAACAAGTTTCCTTCCCTCG
CAGCACCGCCATCGCCATCATCAGCATCACCATCCGACGCTGCTCTGATT
GCGGCCACGGACGGCAACAGTCCGGAGAACGAGGAGTCATCTACTCCTCG
CGATGCGCAATCGTCTATTCTCTCCCGCATAATCGCGTTCAAT
back to top