mRNA_Ecto-sp13_S_contig1652.4697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: D8LH72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH72_ECTSI) HSP 1 Score: 235 bits (599), Expect = 9.160e-75 Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 1
Query: 4 AARMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIERRTT 357
A RMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNRE GFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIERRTT
Sbjct: 259 ALRMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREDGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIERRTT 376
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A835Z355_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z355_9STRA) HSP 1 Score: 134 bits (338), Expect = 9.470e-36 Identity = 69/115 (60.00%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 25 PDMKETFLNGN--GVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREV-----GFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
P++KE F +G G HR LVWLL+ VAGE L HRQ+I SDPRQA FL + R R + D EDD V+WAFNEAR LL+DNEG FEALR+RLE GGATVG+CVS+I+R
Sbjct: 254 PELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDR 368
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A0G4G463_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G463_VITBC) HSP 1 Score: 106 bits (264), Expect = 1.130e-24 Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 4 AARMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
A +MA DP ++ L G+ ++LVWLLAGVA E L H + I +DPRQ+ AF++++R+++ +D E S RV+WAF++A LL+ + + LRRR+E ATVGDCV+ +E+
Sbjct: 305 ALKMAEDPRIRMDLLTPAGIDKLLVWLLAGVAAENLQHPECIVADPRQSDAFVKLMRDKDYLKGVDDETASLRVKWAFHKATNLLRKHRRVHDELRRRMESKAATVGDCVTFLEK 419
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A7S1XSQ6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSQ6_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 5.230e-20 Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 16 AADPDMKETF-LNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREV-GFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIE 345
A D M+E N V+R+LVWLLA VAGE + Q++ASDPRQA AFL +VR R V G P++ + V+WA+ EAR L++ NE + + R+E +VGDC +I +
Sbjct: 185 AEDAAMQEALPRNAATVNRLLVWLLAPVAGEDTKYSQLLASDPRQAAAFLSLVRARGVDGAAYSPDEAGDMVKWAYGEARKLVRTNEVLIDRISERMETMQGSVGDCAAICD 296
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A7S2YG07_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YG07_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 3.750e-19 Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 43 FLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVR-----NREVGFEL--------DPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
FL+ G+ R+L+WLLA VA E + +I+SDPR+A FL + N V L D ++ ++ +QWAF E LL+DN + L RLEGG AT+GDC++++ER
Sbjct: 1 FLSDLGLVRLLMWLLAPVAAEAAQYPTLISSDPREATGFLDRLEQLSPSNPAVAEALWWIQDGAIDEKERNDLLQWAFAETNVLLRDNRKTVQELAERLEGGAATIGDCIAVMER 115
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A4D9D6H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6H3_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.730e-18 Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 4 AARMAAD-PDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIE 345
A RM A P ET + G++R+LV+LLA VA E + Q++ASD RQA A LQ+ R + ++ + WA+ EA+ LL+ + E L++R+E GGATVGDCV+++E
Sbjct: 256 AVRMTAQVPAFAETLSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVYMGRGEARGQEGREEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALLE 370
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: W7U4H7_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4H7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.060e-18 Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 4 AARMAAD-PDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIE 345
A RM A P ET + G++R+LV+LLA VA E + Q++ASD RQA A LQ+ R + ++ + WA+ EA+ LL+ + E L++R+E GGATVGDCV+++E
Sbjct: 387 AVRMTAQVPAFAETLSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVFMGRGEARGQEGREEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALLE 501
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A7S3L5Z2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5Z2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 6.950e-17 Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 1 IAARMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRN---------REVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
+ A + D + ++ L+ NG+ R+LVWL+A VA E I SDPR+A FL+ + + E+ + D + + ++WA+ EA L++ N + L RLEGG ATVGDCV+++ER
Sbjct: 375 VLAVESRDSEDLDSLLSSNGIMRLLVWLMAPVAAESAQFPVCIMSDPREAEGFLERLESVAENSPPVAAELWWLNDATEREDLLKWAYTEADLLIRTNRKVVDRLAERLEGGAATVGDCVALLER 499
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A8J2WW41_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WW41_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 4.830e-14 Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 16 AADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
AA+ + + ++ N V +LVWL A VA E HR+++ASDPRQA AFL ++R R G D + + +WA +A LL+ + E L E G AT GD V+ +ER
Sbjct: 254 AANAAVVDGSVDENRVRALLVWLCAPVACERRKHRKLLASDPRQAVAFLTLLRGR--GQFTDVNSNEDNARWALGDAARLLESRTRSVEELADFFESGVATAGDVVARLER 362 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1652.4697.1 >prot_Ecto-sp13_S_contig1652.4697.1 ID=prot_Ecto-sp13_S_contig1652.4697.1|Name=mRNA_Ecto-sp13_S_contig1652.4697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp MAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLback to top mRNA from alignment at Ecto-sp13_S_contig1652:15126..15750- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1652.4697.1 ID=mRNA_Ecto-sp13_S_contig1652.4697.1|Name=mRNA_Ecto-sp13_S_contig1652.4697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1652:15126..15750- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1652:15126..15750- >mRNA_Ecto-sp13_S_contig1652.4697.1 ID=mRNA_Ecto-sp13_S_contig1652.4697.1|Name=mRNA_Ecto-sp13_S_contig1652.4697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1652:15126..15750- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |