mRNA_Ecto-sp13_S_contig1652.4697.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1652.4697.1
Unique NamemRNA_Ecto-sp13_S_contig1652.4697.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: D8LH72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH72_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 9.160e-75
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 1
Query:    4 AARMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIERRTT 357
            A RMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNRE GFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIERRTT
Sbjct:  259 ALRMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREDGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIERRTT 376          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A835Z355_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z355_9STRA)

HSP 1 Score: 134 bits (338), Expect = 9.470e-36
Identity = 69/115 (60.00%), Postives = 82/115 (71.30%), Query Frame = 1
Query:   25 PDMKETFLNGN--GVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREV-----GFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
            P++KE F +G   G HR LVWLL+ VAGE L HRQ+I SDPRQA  FL + R R +         D EDD   V+WAFNEAR LL+DNEG FEALR+RLE GGATVG+CVS+I+R
Sbjct:  254 PELKEAFQSGGAGGAHRTLVWLLSAVAGEHLTHRQLIVSDPRQATTFLLLARERGLLPSCGDAAADAEDDEMAVRWAFNEARELLRDNEGMFEALRQRLETGGATVGECVSLIDR 368          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A0G4G463_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G463_VITBC)

HSP 1 Score: 106 bits (264), Expect = 1.130e-24
Identity = 51/115 (44.35%), Postives = 78/115 (67.83%), Query Frame = 1
Query:    4 AARMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
            A +MA DP ++   L   G+ ++LVWLLAGVA E L H + I +DPRQ+ AF++++R+++    +D E  S RV+WAF++A  LL+ +    + LRRR+E   ATVGDCV+ +E+
Sbjct:  305 ALKMAEDPRIRMDLLTPAGIDKLLVWLLAGVAAENLQHPECIVADPRQSDAFVKLMRDKDYLKGVDDETASLRVKWAFHKATNLLRKHRRVHDELRRRMESKAATVGDCVTFLEK 419          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A7S1XSQ6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSQ6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.230e-20
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   16 AADPDMKETF-LNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREV-GFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIE 345
            A D  M+E    N   V+R+LVWLLA VAGE   + Q++ASDPRQA AFL +VR R V G    P++  + V+WA+ EAR L++ NE   + +  R+E    +VGDC +I +
Sbjct:  185 AEDAAMQEALPRNAATVNRLLVWLLAPVAGEDTKYSQLLASDPRQAAAFLSLVRARGVDGAAYSPDEAGDMVKWAYGEARKLVRTNEVLIDRISERMETMQGSVGDCAAICD 296          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A7S2YG07_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YG07_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.750e-19
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   43 FLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVR-----NREVGFEL--------DPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
            FL+  G+ R+L+WLLA VA E   +  +I+SDPR+A  FL  +      N  V   L        D ++ ++ +QWAF E   LL+DN    + L  RLEGG AT+GDC++++ER
Sbjct:    1 FLSDLGLVRLLMWLLAPVAAEAAQYPTLISSDPREATGFLDRLEQLSPSNPAVAEALWWIQDGAIDEKERNDLLQWAFAETNVLLRDNRKTVQELAERLEGGAATIGDCIAVMER 115          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A4D9D6H3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6H3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.730e-18
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    4 AARMAAD-PDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIE 345
            A RM A  P   ET  +  G++R+LV+LLA VA E   + Q++ASD RQA A LQ+   R      +  ++   + WA+ EA+ LL+ +    E L++R+E GGATVGDCV+++E
Sbjct:  256 AVRMTAQVPAFAETLSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVYMGRGEARGQEGREEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALLE 370          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: W7U4H7_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U4H7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.060e-18
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    4 AARMAAD-PDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIE 345
            A RM A  P   ET  +  G++R+LV+LLA VA E   + Q++ASD RQA A LQ+   R      +  ++   + WA+ EA+ LL+ +    E L++R+E GGATVGDCV+++E
Sbjct:  387 AVRMTAQVPAFAETLSSTAGLNRLLVYLLAPVAVEEANYAQLMASDARQARALLQVFMGRGEARGQEGREEEVLLPWAYEEAKRLLRSHSALLERLKQRMESGGATVGDCVALLE 501          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A7S3L5Z2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L5Z2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.950e-17
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 IAARMAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRN---------REVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
            + A  + D +  ++ L+ NG+ R+LVWL+A VA E       I SDPR+A  FL+ + +          E+ +  D  +  + ++WA+ EA  L++ N    + L  RLEGG ATVGDCV+++ER
Sbjct:  375 VLAVESRDSEDLDSLLSSNGIMRLLVWLMAPVAAESAQFPVCIMSDPREAEGFLERLESVAENSPPVAAELWWLNDATEREDLLKWAYTEADLLIRTNRKVVDRLAERLEGGAATVGDCVALLER 499          
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Match: A0A8J2WW41_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WW41_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.830e-14
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   16 AADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFLQMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGGATVGDCVSIIER 348
            AA+  + +  ++ N V  +LVWL A VA E   HR+++ASDPRQA AFL ++R R  G   D   + +  +WA  +A  LL+    + E L    E G AT GD V+ +ER
Sbjct:  254 AANAAVVDGSVDENRVRALLVWLCAPVACERRKHRKLLASDPRQAVAFLTLLRGR--GQFTDVNSNEDNARWALGDAARLLESRTRSVEELADFFESGVATAGDVVARLER 362          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1652.4697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LH72_ECTSI9.160e-7598.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z355_9STRA9.470e-3660.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4G463_VITBC1.130e-2444.35Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S1XSQ6_9STRA5.230e-2044.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2YG07_9STRA3.750e-1940.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A4D9D6H3_9STRA1.730e-1841.74Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U4H7_9STRA3.060e-1841.74Uncharacterized protein n=3 Tax=Nannochloropsis ga... [more]
A0A7S3L5Z2_9STRA6.950e-1736.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A8J2WW41_9STRA4.830e-1439.64Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1652contigEcto-sp13_S_contig1652:15126..15750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score233.8
Seed ortholog evalue4.1e-59
Seed eggNOG ortholog2880.D8LH72
Model size360
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2DR9F@1,2S6DN@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_000800.1
Cds size348
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.7322145-CDS-Ecto-sp13_S_contig1652:15125..153061681462868.7322145-CDS-Ecto-sp13_S_contig1652:15125..15306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1652 15126..15306 -
1681462868.7425938-CDS-Ecto-sp13_S_contig1652:15571..157381681462868.7425938-CDS-Ecto-sp13_S_contig1652:15571..15738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1652 15572..15738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.7526996-UTR-Ecto-sp13_S_contig1652:15738..157501681462868.7526996-UTR-Ecto-sp13_S_contig1652:15738..15750Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1652 15739..15750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1652.4697.1prot_Ecto-sp13_S_contig1652.4697.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1652 15126..15738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1652.4697.1

>prot_Ecto-sp13_S_contig1652.4697.1 ID=prot_Ecto-sp13_S_contig1652.4697.1|Name=mRNA_Ecto-sp13_S_contig1652.4697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MAADPDMKETFLNGNGVHRILVWLLAGVAGEGLVHRQMIASDPRQAFAFL
QMVRNREVGFELDPEDDSERVQWAFNEARALLKDNEGAFEALRRRLEGGG
ATVGDCVSIIERRTT*
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mRNA from alignment at Ecto-sp13_S_contig1652:15126..15750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1652.4697.1 ID=mRNA_Ecto-sp13_S_contig1652.4697.1|Name=mRNA_Ecto-sp13_S_contig1652.4697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1652:15126..15750- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGCTGCTAGGATGGCCGCCGATCCTGACATGAAGGAGACGTTTTTGAA TGGCAACGGCGTGCACCGCATTCTGGTTTGGCTTCTGGCTGGGGTAGCGG GCGAAGGGCTGGTTCACCGACAAATGATTGCTAGCGATCCTCGTCAAGCC TTCGCGTTTCTGCAGATGGTTCGGAATAGGTGAGCATCATGTATGCCGGA TGAGGTGTTGCAGCAGAGGGGGAAACATACTAGGCTGATGGCCCATGATA TGCATATGTAGCGGCATTTTGCCAATGTCATGGCGGTTGGTGGGATCCTG TGACCGAGGTCTTGGTACCTCATGAATTTTCAAAATAATTTTCAAATTTG GTACTCCTAAGTGGCTCACACGATTTGCACGGTCCTAGTATTAATCGGAC GATTGTTTTACGCCAGCCTTACTTCGTGTTTTCTTTCATCCTAGGGAGGT TGGGTTCGAACTGGACCCTGAAGACGATTCTGAACGAGTACAGTGGGCTT TTAACGAGGCCAGAGCACTGCTCAAGGACAACGAAGGCGCGTTTGAGGCG TTGCGACGGAGACTAGAGGGTGGTGGAGCAACGGTTGGCGATTGTGTGTC CATCATCGAGAGAAGGACAACCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1652:15126..15750-

>mRNA_Ecto-sp13_S_contig1652.4697.1 ID=mRNA_Ecto-sp13_S_contig1652.4697.1|Name=mRNA_Ecto-sp13_S_contig1652.4697.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1652:15126..15750- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGCCGATCCTGACATGAAGGAGACGTTTTTGAATGGCAACGGCGT
GCACCGCATTCTGGTTTGGCTTCTGGCTGGGGTAGCGGGCGAAGGGCTGG
TTCACCGACAAATGATTGCTAGCGATCCTCGTCAAGCCTTCGCGTTTCTG
CAGATGGTTCGGAATAGGGAGGTTGGGTTCGAACTGGACCCTGAAGACGA
TTCTGAACGAGTACAGTGGGCTTTTAACGAGGCCAGAGCACTGCTCAAGG
ACAACGAAGGCGCGTTTGAGGCGTTGCGACGGAGACTAGAGGGTGGTGGA
GCAACGGTTGGCGATTGTGTGTCCATCATCGAGAGAAGGACAACCTGA
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