mRNA_Ecto-sp13_S_contig1652.4695.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1652.4695.1
Unique NamemRNA_Ecto-sp13_S_contig1652.4695.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: D8LH74_ECTSI (Mitochondrial import inner membrane translocase subunit TIM17 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH74_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 8.780e-116
Identity = 207/216 (95.83%), Postives = 209/216 (96.76%), Query Frame = 3 
Query:   42 MTYCRLLLQGLLLFVALGCNALPGWSRNAVGAAVQPHRGLAWTSRTPRTRTIRRQFPVAAAVASTSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVADVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFALPSGQDDELDVVDIPVDAPKKR 689
            M YCRLLLQGLLL VALGCNALPGWSRN+VGAAVQPH GLAWTSRTP TRT+RRQFPVAAAVASTSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRV DVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFA PSGQDDELDVVDIPVDAPK R
Sbjct:    1 MAYCRLLLQGLLLSVALGCNALPGWSRNSVGAAVQPHHGLAWTSRTPTTRTLRRQFPVAAAVASTSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVPDVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAFPSGQDDELDVVDIPVDAPKTR 216
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BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A7S1T4X3_9RHOD (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4X3_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 3.840e-7
Identity = 27/85 (31.76%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:  435 NWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFALPSGQDDELDVVDIPVDAPKKR 689
            +WG +SA ++G  + +  IRG++D+++ + GACG+GA      GP+   QG A++ LF  +F +    + + + VD+   +  KR
Sbjct:   92 SWGGISAIYSGLQATARAIRGKDDRYNALAGACGSGAVFALGSGPRAALQGCASFALFGYVFDVMFYPNSKEEAVDMETGSDVKR 176
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BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: L1JQE8_GUITC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQE8_GUITC)

HSP 1 Score: 58.5 bits (140), Expect = 1.160e-6
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 3 
Query:  399 KSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAL 626
            K   +     G  WG +SAAF G   ++  IRG+ DKW+ ++GAC AG   N  KG   MA G   + + S I  L
Sbjct:   62 KGAMSNGFSTGTAWGSMSAAFCGVEVLAREIRGKTDKWNNMMGACSAGVVGNCGKGVGAMASGCVNFAVMSYIIDL 137
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BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A5J4YNE8_PORPP (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNE8_PORPP)

HSP 1 Score: 57.8 bits (138), Expect = 3.310e-6
Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 3 
Query:  396 LKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLI---FALPSGQDDEL 650
            LK    +A   G +WG + A + G  + +  IRG +D W+ VLGACG+G +L+  +G + MAQG  ++  F+ +   +  P  Q + L
Sbjct:  101 LKLALGEARSSGISWGGIGALYAGIQTAAKNIRGVDDTWNTVLGACGSGVYLSWGQGGRSMAQGCVSFAAFTYVVEKYLYPRNQQEPL 188
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BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A1X6P919_PORUM (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P919_PORUM)

HSP 1 Score: 57.0 bits (136), Expect = 6.800e-6
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:  435 NWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKG--PQGMAQGAATYGLFSLI 617
            +WG +SA ++G  + + V R +ND+W+ V+GACG+GA  + A G  P+   QG  ++ LFS +
Sbjct:  123 SWGGVSAVYSGLQTAAKVARAKNDRWNNVIGACGSGAAFSCASGGGPRAAVQGCVSFALFSYV 185
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BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A7S1H0Q5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H0Q5_HEMAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.210e-5
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 3 
Query:  390 GWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLN 554
            G  K+     V+ G +WG +SAAF G   ++  IRG  DKW+ ++GACGAGA  N
Sbjct:  148 GGFKAAMANGVKTGNSWGIMSAAFCGLEVLAKEIRGTQDKWNNMVGACGAGACAN 202
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BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A7S0VK43_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VK43_9CRYP)

HSP 1 Score: 55.8 bits (133), Expect = 1.620e-5
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 3 
Query:  390 GWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLN 554
            G  K+     V+ G +WG +SAAF G   ++  +RG  DKW+ ++GACGAGA  N
Sbjct:  148 GGFKAAMANGVKTGNSWGIMSAAFCGLEVLAREVRGTQDKWNNMVGACGAGACAN 202
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LH74_ECTSI8.780e-11695.83Mitochondrial import inner membrane translocase su... [more]
A0A7S1T4X3_9RHOD3.840e-731.76Mitochondrial import inner membrane translocase su... [more]
L1JQE8_GUITC1.160e-638.16Mitochondrial import inner membrane translocase su... [more]
A0A5J4YNE8_PORPP3.310e-634.09Mitochondrial import inner membrane translocase su... [more]
A0A1X6P919_PORUM6.800e-639.68Mitochondrial import inner membrane translocase su... [more]
A0A7S1H0Q5_HEMAN1.210e-545.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0VK43_9CRYP1.620e-543.64Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1652contigEcto-sp13_S_contig1652:2886..5649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score345.5
Seed ortholog evalue1.8e-92
Seed eggNOG ortholog2880.D8LH74
Model size1086
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.Tim17/Tim22/Tim23/Pmp24 family
EggNOG OGs2E7AM@1,2SDXE@2759
Ec32 ortholog descriptionTim22-like protein
Ec32 orthologEc-24_000820.1
Cds size651
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1652.4695.1prot_Ecto-sp13_S_contig1652.4695.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1652 3280..5608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.4197316-UTR-Ecto-sp13_S_contig1652:2885..32791681462868.4197316-UTR-Ecto-sp13_S_contig1652:2885..3279Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1652 2886..3279 -
1681462868.5021677-UTR-Ecto-sp13_S_contig1652:5608..56491681462868.5021677-UTR-Ecto-sp13_S_contig1652:5608..5649Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1652 5609..5649 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462868.43491-CDS-Ecto-sp13_S_contig1652:3279..34151681462868.43491-CDS-Ecto-sp13_S_contig1652:3279..3415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1652 3280..3415 -
1681462868.4510522-CDS-Ecto-sp13_S_contig1652:3956..40131681462868.4510522-CDS-Ecto-sp13_S_contig1652:3956..4013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1652 3957..4013 -
1681462868.464785-CDS-Ecto-sp13_S_contig1652:4332..44941681462868.464785-CDS-Ecto-sp13_S_contig1652:4332..4494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1652 4333..4494 -
1681462868.480321-CDS-Ecto-sp13_S_contig1652:4736..48711681462868.480321-CDS-Ecto-sp13_S_contig1652:4736..4871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1652 4737..4871 -
1681462868.4902625-CDS-Ecto-sp13_S_contig1652:5447..56081681462868.4902625-CDS-Ecto-sp13_S_contig1652:5447..5608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1652 5448..5608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1652.4695.1

>prot_Ecto-sp13_S_contig1652.4695.1 ID=prot_Ecto-sp13_S_contig1652.4695.1|Name=mRNA_Ecto-sp13_S_contig1652.4695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MTYCRLLLQGLLLFVALGCNALPGWSRNAVGAAVQPHRGLAWTSRTPRTR
TIRRQFPVAAAVASTSHLTTGRTASGVMENCMEACLTTMQSFIGGTIMGC
VIGGVMGGSFGRVADVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVI
RGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFALPSGQD
DELDVVDIPVDAPKKR*
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mRNA from alignment at Ecto-sp13_S_contig1652:2886..5649-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1652.4695.1 ID=mRNA_Ecto-sp13_S_contig1652.4695.1|Name=mRNA_Ecto-sp13_S_contig1652.4695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1652:2886..5649- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTCGGACACTCAACCATCACACGGGTCAGTTGATTGAACATGACGTAC
TGTCGGCTGTTGCTTCAAGGCTTGCTGCTTTTTGTGGCATTGGGGTGCAA
TGCTCTGCCAGGCTGGAGTAGGAACGCAGTCGGCGCTGCGGTTCAACCAC
ACCGTGGCTTGGCGTGGACATCTCGTACACCCAGAACACGAACAATACGA
AGGTGCGGCGGTATCACCCGCACGCCGCGACGCATGCAGCGGGCTTACCG
TCTGTCATTTTCTTTATGAGTCCTTTGATGGTGGGCAACGCAGCAGTTGC
ACCTGGTTCAACTCCTTGTGTGCAACTAAGCTACCGAATGGTGGGCAACG
CAGCAGTTGTGCCTGTTGAACTCTTGTCTACAACTACAGCTGTCTTCGGC
AACCTACTGGCGTCGACCACGGTGTGTAGTGTGTATGCATCAGGGGGTGG
TTGCTGTGGAGCGGAAGAGTATCATCTCGCCCCCCACTACTGCGGCGATC
GAATGAGTAAGACTATTCATGATTCCTTGAAACACATTTGACTTGTGGAA
ATGGTGCTGTGCATGTGGGTTCGTGAGGCAATAGTGACAGCAGCTCGAAA
ACAAGACTATTCCGACAAATGAGTAAAGGAGCATCCATTGTTGGTTCCGT
TGCACAACCGCGCCAGCGCGCCAAGAGTTTCAAGAGGATGGCGCCAATGC
ATTGCTAATGCGCGCGTGTATGCTCAAAGGCGTAGCCGGTTGGCCACTTA
CACCAAGCCGCTCCTGTGTTACAAACAGGCAGTTTCCCGTGGCAGCTGCT
GTTGCTTCCACCTCGCACTTGACAACGGGAAGGACGGCGTCCGGCGTAAT
GGAGAACTGTATGGAGGCGTGCTTGACAACGATGCAATCTTTCATCGGAG
GCACCATCATGGGGTGTGTACAGCAGAATGCGGGGCGTTGTGTATCGTGA
TGCAGCATATACGACAGCTTCGTAATCAAGAATGAGTTTCCGATACGGCG
TGTTCCTTTGGCGGTATTCCAGGTGGTGTTCCATTCCGCAGGAACTCAAG
CGCGCTTTATGTGTTTATTACCTTTCTTCTAGCAACTCCTTGAATCCATG
GTAGATGCTCGAAGTTCATCGCAATTCTCTGCCTCCACTCCGTGCATGCA
TTCAGGTGTGTGATCGGAGGGGTCATGGGTGGAAGCTTTGGAAGAGTCGC
GGACGTGGGCTGGCTTAAAAGCGTGCAGACAAAAGCAGTCGAGATGGGTG
GCAACTGGGGGCAGTTGTCGGCCGCATTCACCGGGTTCACATCGATATCC
ACGGTCATACGGGGAAGGTACGCAACATTTCCGTTTCAACACTGGCAAGT
CGTGGCAAGCATCCACGAACGTGTGTACATTGTAGCGCTCTTTTGTTGAG
TTTGTTCGGAAACGGAAACCCTGTGCCCCCGAGTTTACCGTGTCTGCTGT
GGCGCCCGTTGGGACAAATATGAATGCGAGGGGAACACTGCTACTCCTTC
CTCATCCACTGGCGTACTGGCCGATAGGCGGCAGTATCTCGGACTTCTGC
TCTAGCGAGCTTCTGATGCAGCCGAGTATCAGATGCACCATTTATTTAAT
TGTAGAAGTCTTGACAAAGTTTCCCGGTTTCTCCAGGAATGACAAATGGG
ACCAGGTGCTGGGGGCTTGTGGGGCTGGCGCCTTCTTGAACAGGTCAGCA
CCGCACTCACATCCTCGTATACGAAGTACTCAAATAGCAATGCACAAAGC
TGCTTGAGGTTTTTTCGCGTGACCTCCGCAAAGAAACAAGATTTCGAGAC
CCACTTTGTCAGAGCAAACGGGTGGTTATTCCCACCTTTGTCCTCTTCCC
TGAATTATTCACTTTTGTAGATGCCGAGTTACCCAGCGTCCTGCTACCGG
AAGAAAAAGGCTATCGCTCGGTGAAAGTCCAATCAAGTTATGCAACGGTA
GAAGTACACACGTTGATTCGCTTTTTGTGTGTCCAAAGTACACAAAGAAC
GTGAAAGTACGGATGGTTCCAAGAGTAAAACTGAAGTACATGGTCACCTT
GAAGGCACAAACGACGCTGTTCGACTCATGGCTACATTGAGCACTCCTAG
TCGATTACATCTACAGTAGTACTGCTGTTTACCAGTATCGATCGACCGTA
CACGACCGCTTGCCGTGTGGTGGCTGAAAAAAATTCAATCTCCGTTTCGC
CTGCTCCTGTTGCCTCGTGCGCGTTAATGAACAGAGCTAAGGGGCCACAA
GGCATGGCTCAAGGGGCCGCAACTTACGGACTTTTCTCACTCATCTTTGC
TTTGCCTTCAGGCCAGGATGACGAGTTGGATGTTGTCGATATCCCTGTAG
ACGCACCGAAGAAGAGGTGACGAGGTACCACACTTGTCGATAACGTTCAC
GGAGGCTTTGGGAAGGACGGTTGAACGACGTGGAGCCGTTTGACCCGTGT
GGCCGGTGCTCACCATTATGCTTACGTACAACATGGTCTTTTTTGTTGTT
GGAAATTGCTTGTTGCTTGGGGGAGTGCGCAGTATGTAGACAGCATCGCA
CACCTTCGGTTGTTGTTGGCGCACGGAACGCCCGCGTCCGGTGCGGCTCG
TTTTGTAGTATCTGGTTGACTGTGCAACGCGTTGATGGCTGCGGAAGCTA
TGCAATGGTGCAGGAAGGTTGGGACTGTTGTGAGTACCGATTGACGGTTT
ACAACCCACTTTGATCCTTGAATTTGTTGGATTTCATTTATGCATATTTT
TGACTGCTTAATAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1652:2886..5649-

>mRNA_Ecto-sp13_S_contig1652.4695.1 ID=mRNA_Ecto-sp13_S_contig1652.4695.1|Name=mRNA_Ecto-sp13_S_contig1652.4695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1652:2886..5649- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTACTGTCGGCTGTTGCTTCAAGGCTTGCTGCTTTTTGTGGCATT
GGGGTGCAATGCTCTGCCAGGCTGGAGTAGGAACGCAGTCGGCGCTGCGG
TTCAACCACACCGTGGCTTGGCGTGGACATCTCGTACACCCAGAACACGA
ACAATACGAAGGCAGTTTCCCGTGGCAGCTGCTGTTGCTTCCACCTCGCA
CTTGACAACGGGAAGGACGGCGTCCGGCGTAATGGAGAACTGTATGGAGG
CGTGCTTGACAACGATGCAATCTTTCATCGGAGGCACCATCATGGGGTGT
GTGATCGGAGGGGTCATGGGTGGAAGCTTTGGAAGAGTCGCGGACGTGGG
CTGGCTTAAAAGCGTGCAGACAAAAGCAGTCGAGATGGGTGGCAACTGGG
GGCAGTTGTCGGCCGCATTCACCGGGTTCACATCGATATCCACGGTCATA
CGGGGAAGGAATGACAAATGGGACCAGGTGCTGGGGGCTTGTGGGGCTGG
CGCCTTCTTGAACAGAGCTAAGGGGCCACAAGGCATGGCTCAAGGGGCCG
CAACTTACGGACTTTTCTCACTCATCTTTGCTTTGCCTTCAGGCCAGGAT
GACGAGTTGGATGTTGTCGATATCCCTGTAGACGCACCGAAGAAGAGGTG
A
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