prot_Ecto-sp13_S_contig1652.4695.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1652.4695.1
Unique Nameprot_Ecto-sp13_S_contig1652.4695.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length217
Homology
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: D8LH74_ECTSI (Mitochondrial import inner membrane translocase subunit TIM17 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH74_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 1.090e-117
Identity = 207/216 (95.83%), Postives = 209/216 (96.76%), Query Frame = 0
Query:    1 MTYCRLLLQGLLLFVALGCNALPGWSRNAVGAAVQPHRGLAWTSRTPRTRTIRRQFPVAAAVASTSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVADVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFALPSGQDDELDVVDIPVDAPKKR 216
            M YCRLLLQGLLL VALGCNALPGWSRN+VGAAVQPH GLAWTSRTP TRT+RRQFPVAAAVASTSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRV DVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFA PSGQDDELDVVDIPVDAPK R
Sbjct:    1 MAYCRLLLQGLLLSVALGCNALPGWSRNSVGAAVQPHHGLAWTSRTPTTRTLRRQFPVAAAVASTSHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVPDVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAFPSGQDDELDVVDIPVDAPKTR 216          
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A7S1T4X3_9RHOD (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T4X3_9RHOD)

HSP 1 Score: 59.3 bits (142), Expect = 1.880e-7
Identity = 27/85 (31.76%), Postives = 50/85 (58.82%), Query Frame = 0
Query:  132 NWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFALPSGQDDELDVVDIPVDAPKKR 216
            +WG +SA ++G  + +  IRG++D+++ + GACG+GA      GP+   QG A++ LF  +F +    + + + VD+   +  KR
Sbjct:   92 SWGGISAIYSGLQATARAIRGKDDRYNALAGACGSGAVFALGSGPRAALQGCASFALFGYVFDVMFYPNSKEEAVDMETGSDVKR 176          
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: L1JQE8_GUITC (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQE8_GUITC)

HSP 1 Score: 58.5 bits (140), Expect = 3.210e-7
Identity = 29/76 (38.16%), Postives = 39/76 (51.32%), Query Frame = 0
Query:  120 KSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAL 195
            K   +     G  WG +SAAF G   ++  IRG+ DKW+ ++GAC AG   N  KG   MA G   + + S I  L
Sbjct:   62 KGAMSNGFSTGTAWGSMSAAFCGVEVLAREIRGKTDKWNNMMGACSAGVVGNCGKGVGAMASGCVNFAVMSYIIDL 137          
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A5J4YNE8_PORPP (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNE8_PORPP)

HSP 1 Score: 57.8 bits (138), Expect = 9.110e-7
Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 0
Query:  119 LKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLI---FALPSGQDDEL 203
            LK    +A   G +WG + A + G  + +  IRG +D W+ VLGACG+G +L+  +G + MAQG  ++  F+ +   +  P  Q + L
Sbjct:  101 LKLALGEARSSGISWGGIGALYAGIQTAAKNIRGVDDTWNTVLGACGSGVYLSWGQGGRSMAQGCVSFAAFTYVVEKYLYPRNQQEPL 188          
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A1X6P919_PORUM (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P919_PORUM)

HSP 1 Score: 57.0 bits (136), Expect = 1.900e-6
Identity = 25/63 (39.68%), Postives = 41/63 (65.08%), Query Frame = 0
Query:  132 NWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKG--PQGMAQGAATYGLFSLI 192
            +WG +SA ++G  + + V R +ND+W+ V+GACG+GA  + A G  P+   QG  ++ LFS +
Sbjct:  123 SWGGVSAVYSGLQTAAKVARAKNDRWNNVIGACGSGAAFSCASGGGPRAAVQGCVSFALFSYV 185          
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A7S1H0Q5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H0Q5_HEMAN)

HSP 1 Score: 56.2 bits (134), Expect = 3.500e-6
Identity = 25/55 (45.45%), Postives = 34/55 (61.82%), Query Frame = 0
Query:  117 GWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLN 171
            G  K+     V+ G +WG +SAAF G   ++  IRG  DKW+ ++GACGAGA  N
Sbjct:  148 GGFKAAMANGVKTGNSWGIMSAAFCGLEVLAKEIRGTQDKWNNMVGACGAGACAN 202          
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Match: A0A7S0VK43_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VK43_9CRYP)

HSP 1 Score: 55.8 bits (133), Expect = 4.750e-6
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 0
Query:  117 GWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLN 171
            G  K+     V+ G +WG +SAAF G   ++  +RG  DKW+ ++GACGAGA  N
Sbjct:  148 GGFKAAMANGVKTGNSWGIMSAAFCGLEVLAREVRGTQDKWNNMVGACGAGACAN 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1652.4695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LH74_ECTSI1.090e-11795.83Mitochondrial import inner membrane translocase su... [more]
A0A7S1T4X3_9RHOD1.880e-731.76Mitochondrial import inner membrane translocase su... [more]
L1JQE8_GUITC3.210e-738.16Mitochondrial import inner membrane translocase su... [more]
A0A5J4YNE8_PORPP9.110e-734.09Mitochondrial import inner membrane translocase su... [more]
A0A1X6P919_PORUM1.900e-639.68Mitochondrial import inner membrane translocase su... [more]
A0A7S1H0Q5_HEMAN3.500e-645.45Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0VK43_9CRYP4.750e-643.64Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 87..190
e-value: 8.3E-13
score: 48.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..216
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.821

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1652contigEcto-sp13_S_contig1652:3280..5608 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1652.4695.1mRNA_Ecto-sp13_S_contig1652.4695.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1652 2886..5649 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1652.4695.1 ID=prot_Ecto-sp13_S_contig1652.4695.1|Name=mRNA_Ecto-sp13_S_contig1652.4695.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MTYCRLLLQGLLLFVALGCNALPGWSRNAVGAAVQPHRGLAWTSRTPRTR
TIRRQFPVAAAVASTSHLTTGRTASGVMENCMEACLTTMQSFIGGTIMGC
VIGGVMGGSFGRVADVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVI
RGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFALPSGQD
DELDVVDIPVDAPKKR*
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