mRNA_Ecto-sp13_S_contig16495.4678.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16495.4678.1
Unique NamemRNA_Ecto-sp13_S_contig16495.4678.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16495.4678.1 vs. uniprot
Match: D8LQP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQP5_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 2.540e-154
Identity = 277/326 (84.97%), Postives = 283/326 (86.81%), Query Frame = 3 
Query:  237 GNKLHTVMSVRAEDERTMALLRKECDQLMVTSMEAKLKEKQAMTLVSGLQADIEALQAQVGVLQSALWLEKERASAAVRASRGATGPPTRGVTSKAALTMLSSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGRSEKRRNGIPLKRIGERGGRGRPATSPAQDTQALRGKLPRGNAGGLFGRKKPWGGGAGGNCSDQHLDGSRGFPASERGGGAGIPDGTTATDGSFTDAWASNDYFHGXXXXXXEKSPQGHQQERSIEQFVLDLDGRRGYGGXXXXXXXXPIGEVESGGGGQTTITPFQRWKRERGIVSLGVAEMFGEQGCCS 1214
            GNKLHTVMSVRAEDERTMALLRKECDQ MVTSMEAK+KEKQAMTLVSGLQADIEALQ QVGVLQSALWLEKERASAAVRASRGA GP TRG  SKAALTM  SA XXXXXXXXXXXXXXXXXXXXXXXXXXXX G S KRRNGIPLKRIGERGGR RPAT+PA+DTQALRGKLP GNAG L+GR KP GGG GGNCS QHL G  GF ASE+GGGAG PDGTTATDGSFTDAWASNDYFHG      EKSPQG+QQERSIEQFVLDLDGRRGY G          GEVESGGGGQTTITPFQRWKRERGIVS GVAEMFG QGCCS
Sbjct:    9 GNKLHTVMSVRAEDERTMALLRKECDQSMVTSMEAKIKEKQAMTLVSGLQADIEALQTQVGVLQSALWLEKERASAAVRASRGAIGPSTRGGVSKAALTMTGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGPSGKRRNGIPLKRIGERGGRRRPATAPAKDTQALRGKLPHGNAGDLYGRNKPRGGGVGGNCSSQHLGGGLGFLASEQGGGAGSPDGTTATDGSFTDAWASNDYFHGAGAGAGEKSPQGYQQERSIEQFVLDLDGRRGYAGGGGSGTG---GEVESGGGGQTTITPFQRWKRERGIVSPGVAEMFGGQGCCS 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16495.4678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQP5_ECTSI2.540e-15484.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16495contigEcto-sp13_S_contig16495:278..3163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1217
Hectar predicted targeting categoryother localisation
Exons6
Cds size1137
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16495.4678.1prot_Ecto-sp13_S_contig16495.4678.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16495 358..3163 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.2495165-UTR-Ecto-sp13_S_contig16495:277..3571681462867.2495165-UTR-Ecto-sp13_S_contig16495:277..357Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16495 278..357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462867.2653813-CDS-Ecto-sp13_S_contig16495:357..4171681462867.2653813-CDS-Ecto-sp13_S_contig16495:357..417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16495 358..417 +
1681462867.2732284-CDS-Ecto-sp13_S_contig16495:614..6771681462867.2732284-CDS-Ecto-sp13_S_contig16495:614..677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16495 615..677 +
1681462867.2810183-CDS-Ecto-sp13_S_contig16495:1223..12571681462867.2810183-CDS-Ecto-sp13_S_contig16495:1223..1257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16495 1224..1257 +
1681462867.289047-CDS-Ecto-sp13_S_contig16495:1663..17311681462867.289047-CDS-Ecto-sp13_S_contig16495:1663..1731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16495 1664..1731 +
1681462867.2976773-CDS-Ecto-sp13_S_contig16495:2094..22021681462867.2976773-CDS-Ecto-sp13_S_contig16495:2094..2202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16495 2095..2202 +
1681462867.3067212-CDS-Ecto-sp13_S_contig16495:2359..31631681462867.3067212-CDS-Ecto-sp13_S_contig16495:2359..3163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16495 2360..3163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16495.4678.1

>prot_Ecto-sp13_S_contig16495.4678.1 ID=prot_Ecto-sp13_S_contig16495.4678.1|Name=mRNA_Ecto-sp13_S_contig16495.4678.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=379bp
MDQSFKLSDGYRNWAAFVEEFRRIEESLQESKRLERVLVAQCNQLKSELV
ASGNKLHTVMSVRAEDERTMALLRKECDQLMVTSMEAKLKEKQAMTLVSG
LQADIEALQAQVGVLQSALWLEKERASAAVRASRGATGPPTRGVTSKAAL
TMLSSASTASAAAAEATAVASAVLANSSSRGGGGGCGRSEKRRNGIPLKR
IGERGGRGRPATSPAQDTQALRGKLPRGNAGGLFGRKKPWGGGAGGNCSD
QHLDGSRGFPASERGGGAGIPDGTTATDGSFTDAWASNDYFHGGGGGGGE
KSPQGHQQERSIEQFVLDLDGRRGYGGGDGGGGGGPIGEVESGGGGQTTI
TPFQRWKRERGIVSLGVAEMFGEQGCCS*
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mRNA from alignment at Ecto-sp13_S_contig16495:278..3163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16495.4678.1 ID=mRNA_Ecto-sp13_S_contig16495.4678.1|Name=mRNA_Ecto-sp13_S_contig16495.4678.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16495:278..3163+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAATTATGCACCTGCCCGTGCGTTTCTGTGTCAAGCAGTCTTGAAGGTGT
GGATGCGTGAGGGGGATAGTGCGGCAGAGCATGGACCAATCGTTCAAACT
CTCCGACGGCTACAGGAATTGGGCTGCATTCGTCGAAGAGGTACCCATCT
GACGTCACGTTTTTTTCTCTGGCGCGATACTGTACAGTAGTTGTAGCATT
GAATATGTATTCTACGTACGGTATTGCATTACGGTGGTACTGCAGATATA
AGGTCTCATATCTCAAGGCGACCTTGTTGTGACCAAGATAGATTGTGCGT
TCAACTCCGACCCCGACTTGCTTGTGCGTTGCAACAGTTTCGTAGAATAG
AGGAATCGCTGCAGGAGTCCAAGCGATTGGAGCGGGTCCTCGTTGCCCAA
GTGAGTGCTTGAATCAGGGTTTGGCCACATGTACATGTTTTTTTATTGTT
CTCGTCGTTCTGCTGTTGGTGCATGGTTGCTGTTGTTGTTTGGTCCATTT
GTGTATCTTCGCAGTATACCACCCTGACAATCTCAGTGAGATGACACTCT
CAGACAGTGCCAACTGCGCTGCAGTAACAACCTCCCCCAGAAGAATCCAA
TGGTCAAGGGACTAATTGCGATGCATGCCACCCGTGGCGTAAGAACAGAA
ACAGCGCTGGTACAGTCCACGCAGTACGTTCAGAACGACCTTGCCATGCA
TCCTTGAAGGATTTACGTGAGGTTCGCTGGTTTACGGCAATGCTTCATCT
GGCATGCACGATGCCTGTGTTCAACCATGTGCATGTGAGGAAGGTTTTTA
GCCGGTCGGTGGGTTGGAGAAATAAAATGCTTACCGCTTATAGTAGCACG
GTTCACCTCGTACCCCCCTCCTGCTTGAACCTCTGACCTGAGAACGACTC
CATTCGTTCCGTGTGGCGCTGTCGTACTCTTCGCGGCGGCCTACAGTGCA
ATCAGCTAAAGTCCGAGCTTGTCGCCAGCGGTGAGTGCCTGACCACATGA
CCCCCAGCCGCAAACGTGATGAATGAATGACATTGACTTATGTTCCAGGT
GAGGTCTACCGCACGACGAGTTCGGTAAACACCGGCTACATCGTCATTTT
TTGTCGTTGTTGGTGGTGCTTCACATGCCGTTGGTATTGTTCGGTGGTGC
TGCTTGGTGGCGGGCCTGTCGGTGGTTATTTTTTGTTAGTTGGTGGCTTT
GGCCGTGGCGATCGTCACGCTCCACCGGAAAAAAGTAGTGTGCGCCCTGC
CGTACCTTCGCGCCCTCCGTTGTCGAGATTGCCAGGCGGTCACCCGATAA
GTGGTCGTGTATATGGATCTCCAAGCCCTCTTGCCTCGTCTACATGTTGT
CGTCCATGTCAAATTTCACTGGTTGCCGTTGGAAAGGCAACAAACTACAC
ACGGTGATGAGCGTGCGCGCAGAGGACGAAAGGACCATGGCTCTGCTGCG
AAAGGTACTCCATGAACTCACTAGAATTGCTGGGAGAAGCATAAGCTGGG
AGGAGGAGCTATGAATGCATGCTTGGGCCTACTGTAGATCATTCTACTGG
GGCAAAATCAAGCCCCACAGGAACCACGAGTGCATTCCTTCGAGGTAGGG
TTAGATTCCACTTCCTGAAAGCAATGGTCGGAATGTTGCCAGGATTTCTG
AGGAGACAAAGCGTATGTGTGTCGACCAACCAAATAGAAAGGCAGTGTTT
CACAACACTCCGGGGAATTCATTCTTGTGGACTAGCGACATCATGGCGTC
ACCGGCACAATGGTAGGTGTTTCACGACATGCGATCCGTTCGTTCTTTTG
GGCCACGCGCCCCGCAGGAGTGCGACCAATTGATGGTTACCTCGATGGAG
GCGAAATTAAAGGAAAAGCAGGCCATGACGCTCGTTTCGGGGCTACAGGC
GGACATCGAGGCCCTGCAAGCCCAGGTGATCCGATCGGCTGACTCGAGAT
CAGGAGACCGCCACATTCCTACAAAACCTATAACGGGGTCCACCCCGTAG
ACAGACACATGAAGTCTCAGAAACACCATCAACACGTGTCACCTCCTCAC
TACTGTGTCCCATCGTTGCCCACTGCCGAAAGGTTGGGGTCCTCCAGAGC
GCCCTCTGGTTAGAGAAGGAGCGAGCTAGCGCGGCTGTCAGAGCCAGCAG
GGGCGCGACCGGCCCGCCCACAAGAGGCGTGACGTCGAAGGCGGCACTGA
CGATGTTGAGCTCTGCCTCGACGGCGTCGGCAGCAGCGGCAGAGGCGACG
GCGGTCGCATCCGCGGTGCTGGCGAACAGCTCAAGCCGCGGAGGTGGTGG
AGGATGTGGCCGGTCAGAGAAACGAAGAAACGGCATCCCCTTGAAGCGGA
TAGGGGAACGAGGCGGCCGTGGTCGGCCAGCAACATCACCAGCGCAAGAC
ACACAAGCTCTTAGAGGGAAACTCCCTCGCGGCAACGCCGGCGGTCTCTT
TGGCAGGAAAAAGCCCTGGGGGGGAGGGGCGGGTGGCAACTGCAGCGACC
AGCATCTCGACGGTAGCCGTGGCTTTCCCGCCAGCGAGCGGGGGGGTGGT
GCGGGTATCCCAGACGGGACAACGGCGACTGACGGGTCGTTCACTGACGC
CTGGGCGTCCAACGACTACTTTCACGGTGGCGGCGGCGGCGGCGGCGAAA
AGAGCCCACAAGGCCACCAACAGGAGCGGAGTATAGAACAGTTCGTGCTC
GATCTCGACGGCCGCAGAGGATATGGTGGTGGAGATGGTGGTGGTGGTGG
TGGGCCGATTGGCGAGGTAGAAAGCGGTGGTGGGGGCCAAACCACGATCA
CCCCGTTCCAGAGATGGAAAAGAGAGCGAGGAATTGTCTCCCTGGGAGTT
GCCGAGATGTTTGGGGAGCAAGGGTGTTGTTCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16495:278..3163+

>mRNA_Ecto-sp13_S_contig16495.4678.1 ID=mRNA_Ecto-sp13_S_contig16495.4678.1|Name=mRNA_Ecto-sp13_S_contig16495.4678.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16495:278..3163+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCAATCGTTCAAACTCTCCGACGGCTACAGGAATTGGGCTGCATT
CGTCGAAGAGTTTCGTAGAATAGAGGAATCGCTGCAGGAGTCCAAGCGAT
TGGAGCGGGTCCTCGTTGCCCAATGCAATCAGCTAAAGTCCGAGCTTGTC
GCCAGCGGCAACAAACTACACACGGTGATGAGCGTGCGCGCAGAGGACGA
AAGGACCATGGCTCTGCTGCGAAAGGAGTGCGACCAATTGATGGTTACCT
CGATGGAGGCGAAATTAAAGGAAAAGCAGGCCATGACGCTCGTTTCGGGG
CTACAGGCGGACATCGAGGCCCTGCAAGCCCAGGTTGGGGTCCTCCAGAG
CGCCCTCTGGTTAGAGAAGGAGCGAGCTAGCGCGGCTGTCAGAGCCAGCA
GGGGCGCGACCGGCCCGCCCACAAGAGGCGTGACGTCGAAGGCGGCACTG
ACGATGTTGAGCTCTGCCTCGACGGCGTCGGCAGCAGCGGCAGAGGCGAC
GGCGGTCGCATCCGCGGTGCTGGCGAACAGCTCAAGCCGCGGAGGTGGTG
GAGGATGTGGCCGGTCAGAGAAACGAAGAAACGGCATCCCCTTGAAGCGG
ATAGGGGAACGAGGCGGCCGTGGTCGGCCAGCAACATCACCAGCGCAAGA
CACACAAGCTCTTAGAGGGAAACTCCCTCGCGGCAACGCCGGCGGTCTCT
TTGGCAGGAAAAAGCCCTGGGGGGGAGGGGCGGGTGGCAACTGCAGCGAC
CAGCATCTCGACGGTAGCCGTGGCTTTCCCGCCAGCGAGCGGGGGGGTGG
TGCGGGTATCCCAGACGGGACAACGGCGACTGACGGGTCGTTCACTGACG
CCTGGGCGTCCAACGACTACTTTCACGGTGGCGGCGGCGGCGGCGGCGAA
AAGAGCCCACAAGGCCACCAACAGGAGCGGAGTATAGAACAGTTCGTGCT
CGATCTCGACGGCCGCAGAGGATATGGTGGTGGAGATGGTGGTGGTGGTG
GTGGGCCGATTGGCGAGGTAGAAAGCGGTGGTGGGGGCCAAACCACGATC
ACCCCGTTCCAGAGATGGAAAAGAGAGCGAGGAATTGTCTCCCTGGGAGT
TGCCGAGATGTTTGGGGAGCAAGGGTGTTGTTCCTGA
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