mRNA_Ecto-sp13_S_contig16468.4661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16468.4661.1
Unique NamemRNA_Ecto-sp13_S_contig16468.4661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16468.4661.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 3.480e-94
Identity = 383/749 (51.13%), Postives = 407/749 (54.34%), Query Frame = 1
Query:   70 VPPLRPSNGQDTPAAAPAVGMKKPIPP--ATGTKRKGKLRLPSAKTKGVSGKGGXXXXXXXGQDAAPAVATLAADXXXXXXXXXXXXXXXXXXXXXXXXGCGADQTPSTESKKTKKK-QASVWEGCGFTGVGEPPSVASAPVDAADDDEDAATGASAAGTVAADIATGSRDVVGAA--DDAADSPAADDDVADGGAKVGPGREETSDLSSPCPVKPSSTGWKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------GGMPAVSERRVPSDEVPAKQNDDLGGEGSDAAVPGAAXXXXXXXXXXXXXXXXXXXXXXTEPTVAEAVTQEVEPRASDTETGGAGRGRKHGDDVPVAADPWTPESTPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVAPVASNVGTAAVASPLGRVSKRVAARAAEQAKXXXXXXXXXXXXXXXXLEAKARRKEXXXXXXXXXXXXXXXXXXXXXXIISGDFPPVVSGDSLPASHKKGVTIGMTTPTEGVPHGPKTRVILGNIPPAAGTAGKPAKLASIFLPRAGGLGSAAPAAGPKLAPLFMPKRKASPETIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRKEASLPSSAAPPSIEV 2283
            VPPLRP+NGQDTPAA              ATGTK+KGKLRLPS +TKG +GKGG       G+ AAPA AT    XXXXXXXXXXXXXXXXXXXXXXXXGCGA   P+TESK      QASVWEGCGFTGVGEP S ASAP DAA DD+DAATGASA+G VAA               DDAA+SPAA+DDVADGGAKVGPG+EETS+LSSPCPV+PSSTG KR XXXXXXX               XXXXXXXXXX        GGMPAVSER V S  VPAKQNDDLG +G DAAVPGAA     XXXXX             EP V EAVT++  PRASDTE       +++G DVPVAADP TPESTPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                                                                                                                  IISGD P VVSGD LP SHKKG   GMTT  EGVPH PKTRVI GNIPPAAGTAGKPAKLASIFLPRAGG G AAPAAGPKLAPLF+PKRKASPET+     XXXXXXXXXXXXXXXXX         SGRK+ASLPSS +PPSIE+
Sbjct:   70 VPPLRPNNGQDTPAAXXXXXXXXXXXXXXATGTKKKGKLRLPSRRTKGGAGKGG-------GEGAAPAAATSXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGAALAPTTESKXXXXXXQASVWEGCGFTGVGEPLSAASAPADAAGDDKDAATGASASGAVAAXXXXXXXXXXXXXXXDDAAESPAANDDVADGGAKVGPGQEETSELSSPCPVEPSSTGQKRXXXXXXXXHAESARSETPGGCARXXXXXXXXXXPPLEGDDDGGMPAVSERLVLSATVPAKQNDDLGVDGGDAAVPGAAAITAAXXXXXEGAAPLAVAAI--EPAVGEAVTEQAVPRASDTE-------KENGGDVPVAADPGTPESTPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IISGDCPTVVSGDPLPTSHKKGAATGMTTSAEGVPHAPKTRVIPGNIPPAAGTAGKPAKLASIFLPRAGGWGGAAPAAGPKLAPLFVPKRKASPETVSDVGGXXXXXXXXXXXXXXXXX---------SGRKKASLPSSVSPPSIEI 599          
BLAST of mRNA_Ecto-sp13_S_contig16468.4661.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 6.020e-44
Identity = 153/183 (83.61%), Postives = 156/183 (85.25%), Query Frame = 1
Query: 1759 KARRKEXXXXXXXXXXXXXXXXXXXXXXIISGDFPPVVSGDSLPASHKKGVTIGMTTPTEGVPHGPKTRVILGNIPPAAGTAGKPAKLASIFLPRAGGLGSAAPAAGPKLAPLFMPKRKASPETIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------SGRKEASLPSSAAPPSIEV 2283
            KARRKEXXXXXXXXXXXXXXXX      IISGD PPVVSGDSLPASHKKGVT GMTT TEGVPHGPKTRVI GNIPPAAGTAG PAKLASIFLPRAGG G AAPAAGPKLAPLFMPKRK SPET  G XXXXXXXXXXXXXXXXXXXXXXXXXXXX        SGRK+ASLPS+  PPSIE+
Sbjct:  161 KARRKEXXXXXXXXXXXXXXXXVAATTTIISGDSPPVVSGDSLPASHKKGVTTGMTTSTEGVPHGPKTRVIPGNIPPAAGTAGNPAKLASIFLPRAGGWGGAAPAAGPKLAPLFMPKRKPSPETFSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRKKASLPSAVTPPSIEI 343          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16468.4661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH97_ECTSI3.480e-9451.13Similar to chromosome fragility associated gene 1 ... [more]
A0A6H5KGC2_9PHAE6.020e-4483.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16468contigEcto-sp13_S_contig16468:222..3073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score341.7
Seed ortholog evalue9.1e-91
Seed eggNOG ortholog2880.D7FH97
Model size2289
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
Cds size2289
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.7950594-CDS-Ecto-sp13_S_contig16468:221..6041681462865.7950594-CDS-Ecto-sp13_S_contig16468:221..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16468 222..604 -
1681462865.8122144-CDS-Ecto-sp13_S_contig16468:1167..30731681462865.8122144-CDS-Ecto-sp13_S_contig16468:1167..3073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16468 1168..3073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16468.4661.1prot_Ecto-sp13_S_contig16468.4661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16468 222..3073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16468.4661.1

>prot_Ecto-sp13_S_contig16468.4661.1 ID=prot_Ecto-sp13_S_contig16468.4661.1|Name=mRNA_Ecto-sp13_S_contig16468.4661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=763bp
GSGTGPAAAPPTPGITGTAGSSGVPPLRPSNGQDTPAAAPAVGMKKPIPP
ATGTKRKGKLRLPSAKTKGVSGKGGGGAGKGGGQDAAPAVATLAADAAAA
KSPKSATVRSPKARAARSPKGCGADQTPSTESKKTKKKQASVWEGCGFTG
VGEPPSVASAPVDAADDDEDAATGASAAGTVAADIATGSRDVVGAADDAA
DSPAADDDVADGGAKVGPGREETSDLSSPCPVKPSSTGWKRRAAGGGGGH
ADSARSETPGEGAAAAAATTTEDDNDGGMPAVSERRVPSDEVPAKQNDDL
GGEGSDAAVPGAAAVAVAAAATAAAEGAAPPAVAATEPTVAEAVTQEVEP
RASDTETGGAGRGRKHGDDVPVAADPWTPESTPVPPPPLAAAADGDDPEI
TTTAVAGDGSVAGAATAGDSVVSDAGVALAAAAAAAAAAAAAAAAAGSSK
ACSPGSGGSDGGVPGGGGAGAAPPAAGAAPPAARGGGAAAPPATAAAPPP
AAAAAGACAGSGAAPPAAVDDTVAASSGASAAGAVAPVASNVGTAAVASP
LGRVSKRVAARAAEQAKAAAAAAEAEAELAAAALEAKARRKEAAAAAKKS
KKKASKAAAAATTTIISGDFPPVVSGDSLPASHKKGVTIGMTTPTEGVPH
GPKTRVILGNIPPAAGTAGKPAKLASIFLPRAGGLGSAAPAAGPKLAPLF
MPKRKASPETIGGGSGGGGGGGGGGGGRRSGGGGEKEKEKEKSGRKEASL
PSSAAPPSIEVR*
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mRNA from alignment at Ecto-sp13_S_contig16468:222..3073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16468.4661.1 ID=mRNA_Ecto-sp13_S_contig16468.4661.1|Name=mRNA_Ecto-sp13_S_contig16468.4661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16468:222..3073- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGCGGGACAGGGCCAGCGGCAGCACCACCAACACCCGGCATCACCGG CACCGCCGGCAGCAGCGGCGTCCCCCCCCTCCGGCCTAGCAACGGGCAGG ACACCCCCGCCGCCGCCCCCGCCGTTGGCATGAAAAAGCCTATACCACCA GCAACAGGCACCAAGAGAAAGGGAAAGCTCCGCCTACCGTCCGCGAAAAC GAAGGGCGTCTCCGGTAAGGGCGGGGGCGGTGCCGGGAAGGGCGGGGGTC AGGACGCCGCGCCAGCGGTGGCGACCTTAGCCGCCGATGCAGCAGCAGCG AAATCTCCCAAATCTGCGACGGTGAGATCTCCGAAGGCTAGGGCGGCGAG ATCTCCGAAAGGGTGCGGCGCGGACCAGACCCCCTCTACGGAGAGCAAGA AGACGAAGAAGAAGCAGGCGAGCGTGTGGGAAGGGTGTGGGTTTACCGGC GTGGGGGAACCTCCCAGCGTTGCATCGGCTCCCGTCGACGCTGCTGATGA TGATGAGGACGCCGCTACGGGCGCTTCCGCTGCGGGTACCGTGGCTGCTG ATATCGCTACGGGTTCTCGCGATGTGGTAGGTGCTGCTGATGATGCTGCG GATTCTCCCGCTGCGGATGATGATGTTGCTGATGGGGGCGCTAAGGTTGG CCCAGGACGGGAGGAGACCAGCGACTTATCGTCACCATGCCCGGTGAAGC CATCGTCAACGGGTTGGAAGAGGCGAGCAGCGGGCGGGGGGGGGGGACAC GCGGATAGTGCCCGCTCCGAGACACCGGGGGAGGGTGCTGCTGCTGCTGC TGCTACTACTACCGAGGACGACAATGACGGCGGCATGCCGGCCGTATCGG AGCGCCGTGTCCCTTCGGACGAAGTGCCCGCAAAGCAGAACGACGACCTC GGAGGCGAAGGCAGCGATGCTGCCGTGCCGGGCGCAGCAGCGGTAGCGGT AGCGGCGGCGGCGACGGCGGCGGCGGAAGGAGCGGCACCGCCAGCGGTGG CAGCGACAGAACCGACGGTAGCGGAGGCGGTGACGCAGGAGGTGGAACCG AGAGCCTCGGACACGGAGACAGGAGGAGCGGGCCGGGGCCGAAAGCACGG CGACGACGTGCCCGTCGCGGCGGATCCATGGACACCCGAATCGACACCGG TTCCGCCGCCTCCTTTGGCGGCCGCTGCAGACGGAGATGACCCTGAGATT ACTACCACTGCTGTGGCTGGGGATGGGAGTGTCGCCGGTGCCGCCACCGC CGGTGATTCGGTTGTCAGCGATGCTGGGGTTGCCCTTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTAGTAGTAAA GCTTGTTCTCCTGGAAGCGGCGGCAGTGATGGCGGCGTACCTGGTGGTGG TGGTGCTGGTGCTGCTCCTCCTGCCGCTGGTGCTGCTCCTCCTGCTGCTC GTGGTGGTGGTGCTGCTGCTCCCCCTGCTACTGCTGCTGCTCCTCCCCCT GCTGCTGCTGCTGCTGGTGCTTGTGCTGGTTCTGGTGCTGCTCCTCCTGC TGCTGTTGATGATACTGTTGCTGCTAGTTCTGGTGCTAGTGCTGCTGGTG CTGTCGCTCCTGTCGCCAGCAACGTAGGAACGGCGGCGGTGGCGTCTCCC CTAGGCCGGGTGTCCAAGCGCGTCGCCGCCCGGGCGGCAGAGCAGGCCAA GGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGAGCTGGCGGCGGCGGCCC TGGAAGCGAAGGCGCGCCGCAAAGAGGCCGCCGCCGCGGCTAAGAAGAGC AAGAAGAAGGCTTCCAAGGCGGCGGCGGCGGCGACGACGACGATCATCTC CGGAGATTTCCCACCGGTGGTCTCCGGAGATTCCCTCCCAGCGTCACACA AGAAAGGTATGTTTTGGGCGAACTCGATGCAGATATCCAGAGATACCCCA ACGGTGGTCTCTGGAGATTCCCTCCCAACGCCACGCAAGAGAGGTGTGTG TGGGGTGATAGTGCCTGCTACGACATTGGAGGAGGCATGGCAAGCCGAAA TCACTCTTTTGTATCCGTACTTTTCCTTTTGCCGGTTCTCTTTTGCCGTA GCCGGCACTGCTGTGTACTCGGCCCTCTCGATACGGATCTAGCGGGTTCC GGGTATAAGTCATTGGTGGTATTACTATGTTACGCGTTTGTGGAAGGGGG CAATCCCGCTCCTGCGTGCATTCCTGTTGCTCTGCGTTTCGGACCACCCC CCGCCACGGGGGGGGAGAATGTACAACAGCCTACCATGGACGAGCAAGCC CTGCTTTCTCTCTCCAACTCTCTCTCTCTGAACAATACCTCTTGCTCTGC GCTTCTGACAACATGCCGCCATCGGCATGCATGCCCGGCGTACTGTTTCT TACCTGCTCTCTCTGAACAATACCTTTTGCTCTGCGCTTCTGACCAACAA CCTCCCCGCCTACCGTCAGGGGTCACCATCGGTATGACTACTCCCACGGA AGGCGTTCCGCATGGCCCCAAGACGCGCGTCATATTGGGGAACATACCGC CGGCTGCTGGAACGGCGGGGAAGCCCGCCAAGCTAGCCTCGATCTTCCTT CCCAGGGCGGGCGGCTTGGGGAGCGCGGCGCCTGCGGCGGGTCCGAAGCT GGCGCCGCTCTTCATGCCCAAGAGGAAGGCTAGCCCTGAGACCATTGGCG GCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTCGTCGT AGTGGCGGTGGTGGGGAGAAAGAGAAAGAGAAAGAAAAGAGCGGACGGAA AGAGGCTTCTCTTCCTTCTTCGGCGGCTCCTCCGAGCATCGAGGTGCGCT AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16468:222..3073-

>mRNA_Ecto-sp13_S_contig16468.4661.1 ID=mRNA_Ecto-sp13_S_contig16468.4661.1|Name=mRNA_Ecto-sp13_S_contig16468.4661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16468:222..3073- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGCGGGACAGGGCCAGCGGCAGCACCACCAACACCCGGCATCACCGG
CACCGCCGGCAGCAGCGGCGTCCCCCCCCTCCGGCCTAGCAACGGGCAGG
ACACCCCCGCCGCCGCCCCCGCCGTTGGCATGAAAAAGCCTATACCACCA
GCAACAGGCACCAAGAGAAAGGGAAAGCTCCGCCTACCGTCCGCGAAAAC
GAAGGGCGTCTCCGGTAAGGGCGGGGGCGGTGCCGGGAAGGGCGGGGGTC
AGGACGCCGCGCCAGCGGTGGCGACCTTAGCCGCCGATGCAGCAGCAGCG
AAATCTCCCAAATCTGCGACGGTGAGATCTCCGAAGGCTAGGGCGGCGAG
ATCTCCGAAAGGGTGCGGCGCGGACCAGACCCCCTCTACGGAGAGCAAGA
AGACGAAGAAGAAGCAGGCGAGCGTGTGGGAAGGGTGTGGGTTTACCGGC
GTGGGGGAACCTCCCAGCGTTGCATCGGCTCCCGTCGACGCTGCTGATGA
TGATGAGGACGCCGCTACGGGCGCTTCCGCTGCGGGTACCGTGGCTGCTG
ATATCGCTACGGGTTCTCGCGATGTGGTAGGTGCTGCTGATGATGCTGCG
GATTCTCCCGCTGCGGATGATGATGTTGCTGATGGGGGCGCTAAGGTTGG
CCCAGGACGGGAGGAGACCAGCGACTTATCGTCACCATGCCCGGTGAAGC
CATCGTCAACGGGTTGGAAGAGGCGAGCAGCGGGCGGGGGGGGGGGACAC
GCGGATAGTGCCCGCTCCGAGACACCGGGGGAGGGTGCTGCTGCTGCTGC
TGCTACTACTACCGAGGACGACAATGACGGCGGCATGCCGGCCGTATCGG
AGCGCCGTGTCCCTTCGGACGAAGTGCCCGCAAAGCAGAACGACGACCTC
GGAGGCGAAGGCAGCGATGCTGCCGTGCCGGGCGCAGCAGCGGTAGCGGT
AGCGGCGGCGGCGACGGCGGCGGCGGAAGGAGCGGCACCGCCAGCGGTGG
CAGCGACAGAACCGACGGTAGCGGAGGCGGTGACGCAGGAGGTGGAACCG
AGAGCCTCGGACACGGAGACAGGAGGAGCGGGCCGGGGCCGAAAGCACGG
CGACGACGTGCCCGTCGCGGCGGATCCATGGACACCCGAATCGACACCGG
TTCCGCCGCCTCCTTTGGCGGCCGCTGCAGACGGAGATGACCCTGAGATT
ACTACCACTGCTGTGGCTGGGGATGGGAGTGTCGCCGGTGCCGCCACCGC
CGGTGATTCGGTTGTCAGCGATGCTGGGGTTGCCCTTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTAGTAGTAAA
GCTTGTTCTCCTGGAAGCGGCGGCAGTGATGGCGGCGTACCTGGTGGTGG
TGGTGCTGGTGCTGCTCCTCCTGCCGCTGGTGCTGCTCCTCCTGCTGCTC
GTGGTGGTGGTGCTGCTGCTCCCCCTGCTACTGCTGCTGCTCCTCCCCCT
GCTGCTGCTGCTGCTGGTGCTTGTGCTGGTTCTGGTGCTGCTCCTCCTGC
TGCTGTTGATGATACTGTTGCTGCTAGTTCTGGTGCTAGTGCTGCTGGTG
CTGTCGCTCCTGTCGCCAGCAACGTAGGAACGGCGGCGGTGGCGTCTCCC
CTAGGCCGGGTGTCCAAGCGCGTCGCCGCCCGGGCGGCAGAGCAGGCCAA
GGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGAGCTGGCGGCGGCGGCCC
TGGAAGCGAAGGCGCGCCGCAAAGAGGCCGCCGCCGCGGCTAAGAAGAGC
AAGAAGAAGGCTTCCAAGGCGGCGGCGGCGGCGACGACGACGATCATCTC
CGGAGATTTCCCACCGGTGGTCTCCGGAGATTCCCTCCCAGCGTCACACA
AGAAAGGGGTCACCATCGGTATGACTACTCCCACGGAAGGCGTTCCGCAT
GGCCCCAAGACGCGCGTCATATTGGGGAACATACCGCCGGCTGCTGGAAC
GGCGGGGAAGCCCGCCAAGCTAGCCTCGATCTTCCTTCCCAGGGCGGGCG
GCTTGGGGAGCGCGGCGCCTGCGGCGGGTCCGAAGCTGGCGCCGCTCTTC
ATGCCCAAGAGGAAGGCTAGCCCTGAGACCATTGGCGGCGGCAGCGGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTCGTCGTAGTGGCGGTGGTG
GGGAGAAAGAGAAAGAGAAAGAAAAGAGCGGACGGAAAGAGGCTTCTCTT
CCTTCTTCGGCGGCTCCTCCGAGCATCGAGGTGCGCTAA
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