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Homology
BLAST of mRNA_Ecto-sp13_S_contig16468.4661.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI) HSP 1 Score: 333 bits (853), Expect = 3.480e-94 Identity = 383/749 (51.13%), Postives = 407/749 (54.34%), Query Frame = 1
Query: 70 VPPLRPSNGQDTPAAAPAVGMKKPIPP--ATGTKRKGKLRLPSAKTKGVSGKGGXXXXXXXGQDAAPAVATLAADXXXXXXXXXXXXXXXXXXXXXXXXGCGADQTPSTESKKTKKK-QASVWEGCGFTGVGEPPSVASAPVDAADDDEDAATGASAAGTVAADIATGSRDVVGAA--DDAADSPAADDDVADGGAKVGPGREETSDLSSPCPVKPSSTGWKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------GGMPAVSERRVPSDEVPAKQNDDLGGEGSDAAVPGAAXXXXXXXXXXXXXXXXXXXXXXTEPTVAEAVTQEVEPRASDTETGGAGRGRKHGDDVPVAADPWTPESTPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAVAPVASNVGTAAVASPLGRVSKRVAARAAEQAKXXXXXXXXXXXXXXXXLEAKARRKEXXXXXXXXXXXXXXXXXXXXXXIISGDFPPVVSGDSLPASHKKGVTIGMTTPTEGVPHGPKTRVILGNIPPAAGTAGKPAKLASIFLPRAGGLGSAAPAAGPKLAPLFMPKRKASPETIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRKEASLPSSAAPPSIEV 2283
VPPLRP+NGQDTPAA ATGTK+KGKLRLPS +TKG +GKGG G+ AAPA AT XXXXXXXXXXXXXXXXXXXXXXXXGCGA P+TESK QASVWEGCGFTGVGEP S ASAP DAA DD+DAATGASA+G VAA DDAA+SPAA+DDVADGGAKVGPG+EETS+LSSPCPV+PSSTG KR XXXXXXX XXXXXXXXXX GGMPAVSER V S VPAKQNDDLG +G DAAVPGAA XXXXX EP V EAVT++ PRASDTE +++G DVPVAADP TPESTPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IISGD P VVSGD LP SHKKG GMTT EGVPH PKTRVI GNIPPAAGTAGKPAKLASIFLPRAGG G AAPAAGPKLAPLF+PKRKASPET+ XXXXXXXXXXXXXXXXX SGRK+ASLPSS +PPSIE+
Sbjct: 70 VPPLRPNNGQDTPAAXXXXXXXXXXXXXXATGTKKKGKLRLPSRRTKGGAGKGG-------GEGAAPAAATSXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGAALAPTTESKXXXXXXQASVWEGCGFTGVGEPLSAASAPADAAGDDKDAATGASASGAVAAXXXXXXXXXXXXXXXDDAAESPAANDDVADGGAKVGPGQEETSELSSPCPVEPSSTGQKRXXXXXXXXHAESARSETPGGCARXXXXXXXXXXPPLEGDDDGGMPAVSERLVLSATVPAKQNDDLGVDGGDAAVPGAAAITAAXXXXXEGAAPLAVAAI--EPAVGEAVTEQAVPRASDTE-------KENGGDVPVAADPGTPESTPVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IISGDCPTVVSGDPLPTSHKKGAATGMTTSAEGVPHAPKTRVIPGNIPPAAGTAGKPAKLASIFLPRAGGWGGAAPAAGPKLAPLFVPKRKASPETVSDVGGXXXXXXXXXXXXXXXXX---------SGRKKASLPSSVSPPSIEI 599
BLAST of mRNA_Ecto-sp13_S_contig16468.4661.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE) HSP 1 Score: 182 bits (461), Expect = 6.020e-44 Identity = 153/183 (83.61%), Postives = 156/183 (85.25%), Query Frame = 1
Query: 1759 KARRKEXXXXXXXXXXXXXXXXXXXXXXIISGDFPPVVSGDSLPASHKKGVTIGMTTPTEGVPHGPKTRVILGNIPPAAGTAGKPAKLASIFLPRAGGLGSAAPAAGPKLAPLFMPKRKASPETIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------SGRKEASLPSSAAPPSIEV 2283
KARRKEXXXXXXXXXXXXXXXX IISGD PPVVSGDSLPASHKKGVT GMTT TEGVPHGPKTRVI GNIPPAAGTAG PAKLASIFLPRAGG G AAPAAGPKLAPLFMPKRK SPET G XXXXXXXXXXXXXXXXXXXXXXXXXXXX SGRK+ASLPS+ PPSIE+
Sbjct: 161 KARRKEXXXXXXXXXXXXXXXXVAATTTIISGDSPPVVSGDSLPASHKKGVTTGMTTSTEGVPHGPKTRVIPGNIPPAAGTAGNPAKLASIFLPRAGGWGGAAPAAGPKLAPLFMPKRKPSPETFSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRKKASLPSAVTPPSIEI 343
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 0 |
| Seed ortholog score | 341.7 |
| Seed ortholog evalue | 9.1e-91 |
| Seed eggNOG ortholog | 2880.D7FH97 |
| Model size | 2289 |
| KEGG ko | ko:K10754 |
| KEGG Pathway | ko03030,ko03420,ko03430,map03030,map03420,map03430 |
| KEGG Module | M00289,M00295 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| EggNOG free text desc. | DNA clamp loader activity |
| EggNOG OGs | COG5275@1,KOG1968@2759 |
| Cds size | 2289 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko03032,ko03400 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462865.7950594-CDS-Ecto-sp13_S_contig16468:221..604 | 1681462865.7950594-CDS-Ecto-sp13_S_contig16468:221..604 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig16468 222..604 - |
| 1681462865.8122144-CDS-Ecto-sp13_S_contig16468:1167..3073 | 1681462865.8122144-CDS-Ecto-sp13_S_contig16468:1167..3073 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig16468 1168..3073 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16468.4661.1 >prot_Ecto-sp13_S_contig16468.4661.1 ID=prot_Ecto-sp13_S_contig16468.4661.1|Name=mRNA_Ecto-sp13_S_contig16468.4661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=763bp
GSGTGPAAAPPTPGITGTAGSSGVPPLRPSNGQDTPAAAPAVGMKKPIPP ATGTKRKGKLRLPSAKTKGVSGKGGGGAGKGGGQDAAPAVATLAADAAAA KSPKSATVRSPKARAARSPKGCGADQTPSTESKKTKKKQASVWEGCGFTG VGEPPSVASAPVDAADDDEDAATGASAAGTVAADIATGSRDVVGAADDAA DSPAADDDVADGGAKVGPGREETSDLSSPCPVKPSSTGWKRRAAGGGGGH ADSARSETPGEGAAAAAATTTEDDNDGGMPAVSERRVPSDEVPAKQNDDL GGEGSDAAVPGAAAVAVAAAATAAAEGAAPPAVAATEPTVAEAVTQEVEP RASDTETGGAGRGRKHGDDVPVAADPWTPESTPVPPPPLAAAADGDDPEI TTTAVAGDGSVAGAATAGDSVVSDAGVALAAAAAAAAAAAAAAAAAGSSK ACSPGSGGSDGGVPGGGGAGAAPPAAGAAPPAARGGGAAAPPATAAAPPP AAAAAGACAGSGAAPPAAVDDTVAASSGASAAGAVAPVASNVGTAAVASP LGRVSKRVAARAAEQAKAAAAAAEAEAELAAAALEAKARRKEAAAAAKKS KKKASKAAAAATTTIISGDFPPVVSGDSLPASHKKGVTIGMTTPTEGVPH GPKTRVILGNIPPAAGTAGKPAKLASIFLPRAGGLGSAAPAAGPKLAPLF MPKRKASPETIGGGSGGGGGGGGGGGGRRSGGGGEKEKEKEKSGRKEASL PSSAAPPSIEVR* back to topmRNA from alignment at Ecto-sp13_S_contig16468:222..3073- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig16468.4661.1 ID=mRNA_Ecto-sp13_S_contig16468.4661.1|Name=mRNA_Ecto-sp13_S_contig16468.4661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16468:222..3073- (Ectocarpus species13 EcNAP12_S_4_19m) GGAAGCGGGACAGGGCCAGCGGCAGCACCACCAACACCCGGCATCACCGG
CACCGCCGGCAGCAGCGGCGTCCCCCCCCTCCGGCCTAGCAACGGGCAGG
ACACCCCCGCCGCCGCCCCCGCCGTTGGCATGAAAAAGCCTATACCACCA
GCAACAGGCACCAAGAGAAAGGGAAAGCTCCGCCTACCGTCCGCGAAAAC
GAAGGGCGTCTCCGGTAAGGGCGGGGGCGGTGCCGGGAAGGGCGGGGGTC
AGGACGCCGCGCCAGCGGTGGCGACCTTAGCCGCCGATGCAGCAGCAGCG
AAATCTCCCAAATCTGCGACGGTGAGATCTCCGAAGGCTAGGGCGGCGAG
ATCTCCGAAAGGGTGCGGCGCGGACCAGACCCCCTCTACGGAGAGCAAGA
AGACGAAGAAGAAGCAGGCGAGCGTGTGGGAAGGGTGTGGGTTTACCGGC
GTGGGGGAACCTCCCAGCGTTGCATCGGCTCCCGTCGACGCTGCTGATGA
TGATGAGGACGCCGCTACGGGCGCTTCCGCTGCGGGTACCGTGGCTGCTG
ATATCGCTACGGGTTCTCGCGATGTGGTAGGTGCTGCTGATGATGCTGCG
GATTCTCCCGCTGCGGATGATGATGTTGCTGATGGGGGCGCTAAGGTTGG
CCCAGGACGGGAGGAGACCAGCGACTTATCGTCACCATGCCCGGTGAAGC
CATCGTCAACGGGTTGGAAGAGGCGAGCAGCGGGCGGGGGGGGGGGACAC
GCGGATAGTGCCCGCTCCGAGACACCGGGGGAGGGTGCTGCTGCTGCTGC
TGCTACTACTACCGAGGACGACAATGACGGCGGCATGCCGGCCGTATCGG
AGCGCCGTGTCCCTTCGGACGAAGTGCCCGCAAAGCAGAACGACGACCTC
GGAGGCGAAGGCAGCGATGCTGCCGTGCCGGGCGCAGCAGCGGTAGCGGT
AGCGGCGGCGGCGACGGCGGCGGCGGAAGGAGCGGCACCGCCAGCGGTGG
CAGCGACAGAACCGACGGTAGCGGAGGCGGTGACGCAGGAGGTGGAACCG
AGAGCCTCGGACACGGAGACAGGAGGAGCGGGCCGGGGCCGAAAGCACGG
CGACGACGTGCCCGTCGCGGCGGATCCATGGACACCCGAATCGACACCGG
TTCCGCCGCCTCCTTTGGCGGCCGCTGCAGACGGAGATGACCCTGAGATT
ACTACCACTGCTGTGGCTGGGGATGGGAGTGTCGCCGGTGCCGCCACCGC
CGGTGATTCGGTTGTCAGCGATGCTGGGGTTGCCCTTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTAGTAGTAAA
GCTTGTTCTCCTGGAAGCGGCGGCAGTGATGGCGGCGTACCTGGTGGTGG
TGGTGCTGGTGCTGCTCCTCCTGCCGCTGGTGCTGCTCCTCCTGCTGCTC
GTGGTGGTGGTGCTGCTGCTCCCCCTGCTACTGCTGCTGCTCCTCCCCCT
GCTGCTGCTGCTGCTGGTGCTTGTGCTGGTTCTGGTGCTGCTCCTCCTGC
TGCTGTTGATGATACTGTTGCTGCTAGTTCTGGTGCTAGTGCTGCTGGTG
CTGTCGCTCCTGTCGCCAGCAACGTAGGAACGGCGGCGGTGGCGTCTCCC
CTAGGCCGGGTGTCCAAGCGCGTCGCCGCCCGGGCGGCAGAGCAGGCCAA
GGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGAGCTGGCGGCGGCGGCCC
TGGAAGCGAAGGCGCGCCGCAAAGAGGCCGCCGCCGCGGCTAAGAAGAGC
AAGAAGAAGGCTTCCAAGGCGGCGGCGGCGGCGACGACGACGATCATCTC
CGGAGATTTCCCACCGGTGGTCTCCGGAGATTCCCTCCCAGCGTCACACA
AGAAAGGTATGTTTTGGGCGAACTCGATGCAGATATCCAGAGATACCCCA
ACGGTGGTCTCTGGAGATTCCCTCCCAACGCCACGCAAGAGAGGTGTGTG
TGGGGTGATAGTGCCTGCTACGACATTGGAGGAGGCATGGCAAGCCGAAA
TCACTCTTTTGTATCCGTACTTTTCCTTTTGCCGGTTCTCTTTTGCCGTA
GCCGGCACTGCTGTGTACTCGGCCCTCTCGATACGGATCTAGCGGGTTCC
GGGTATAAGTCATTGGTGGTATTACTATGTTACGCGTTTGTGGAAGGGGG
CAATCCCGCTCCTGCGTGCATTCCTGTTGCTCTGCGTTTCGGACCACCCC
CCGCCACGGGGGGGGAGAATGTACAACAGCCTACCATGGACGAGCAAGCC
CTGCTTTCTCTCTCCAACTCTCTCTCTCTGAACAATACCTCTTGCTCTGC
GCTTCTGACAACATGCCGCCATCGGCATGCATGCCCGGCGTACTGTTTCT
TACCTGCTCTCTCTGAACAATACCTTTTGCTCTGCGCTTCTGACCAACAA
CCTCCCCGCCTACCGTCAGGGGTCACCATCGGTATGACTACTCCCACGGA
AGGCGTTCCGCATGGCCCCAAGACGCGCGTCATATTGGGGAACATACCGC
CGGCTGCTGGAACGGCGGGGAAGCCCGCCAAGCTAGCCTCGATCTTCCTT
CCCAGGGCGGGCGGCTTGGGGAGCGCGGCGCCTGCGGCGGGTCCGAAGCT
GGCGCCGCTCTTCATGCCCAAGAGGAAGGCTAGCCCTGAGACCATTGGCG
GCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTCGTCGT
AGTGGCGGTGGTGGGGAGAAAGAGAAAGAGAAAGAAAAGAGCGGACGGAA
AGAGGCTTCTCTTCCTTCTTCGGCGGCTCCTCCGAGCATCGAGGTGCGCT
AA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig16468:222..3073- >mRNA_Ecto-sp13_S_contig16468.4661.1 ID=mRNA_Ecto-sp13_S_contig16468.4661.1|Name=mRNA_Ecto-sp13_S_contig16468.4661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16468:222..3073- (Ectocarpus species13 EcNAP12_S_4_19m) GGAAGCGGGACAGGGCCAGCGGCAGCACCACCAACACCCGGCATCACCGG CACCGCCGGCAGCAGCGGCGTCCCCCCCCTCCGGCCTAGCAACGGGCAGG ACACCCCCGCCGCCGCCCCCGCCGTTGGCATGAAAAAGCCTATACCACCA GCAACAGGCACCAAGAGAAAGGGAAAGCTCCGCCTACCGTCCGCGAAAAC GAAGGGCGTCTCCGGTAAGGGCGGGGGCGGTGCCGGGAAGGGCGGGGGTC AGGACGCCGCGCCAGCGGTGGCGACCTTAGCCGCCGATGCAGCAGCAGCG AAATCTCCCAAATCTGCGACGGTGAGATCTCCGAAGGCTAGGGCGGCGAG ATCTCCGAAAGGGTGCGGCGCGGACCAGACCCCCTCTACGGAGAGCAAGA AGACGAAGAAGAAGCAGGCGAGCGTGTGGGAAGGGTGTGGGTTTACCGGC GTGGGGGAACCTCCCAGCGTTGCATCGGCTCCCGTCGACGCTGCTGATGA TGATGAGGACGCCGCTACGGGCGCTTCCGCTGCGGGTACCGTGGCTGCTG ATATCGCTACGGGTTCTCGCGATGTGGTAGGTGCTGCTGATGATGCTGCG GATTCTCCCGCTGCGGATGATGATGTTGCTGATGGGGGCGCTAAGGTTGG CCCAGGACGGGAGGAGACCAGCGACTTATCGTCACCATGCCCGGTGAAGC CATCGTCAACGGGTTGGAAGAGGCGAGCAGCGGGCGGGGGGGGGGGACAC GCGGATAGTGCCCGCTCCGAGACACCGGGGGAGGGTGCTGCTGCTGCTGC TGCTACTACTACCGAGGACGACAATGACGGCGGCATGCCGGCCGTATCGG AGCGCCGTGTCCCTTCGGACGAAGTGCCCGCAAAGCAGAACGACGACCTC GGAGGCGAAGGCAGCGATGCTGCCGTGCCGGGCGCAGCAGCGGTAGCGGT AGCGGCGGCGGCGACGGCGGCGGCGGAAGGAGCGGCACCGCCAGCGGTGG CAGCGACAGAACCGACGGTAGCGGAGGCGGTGACGCAGGAGGTGGAACCG AGAGCCTCGGACACGGAGACAGGAGGAGCGGGCCGGGGCCGAAAGCACGG CGACGACGTGCCCGTCGCGGCGGATCCATGGACACCCGAATCGACACCGG TTCCGCCGCCTCCTTTGGCGGCCGCTGCAGACGGAGATGACCCTGAGATT ACTACCACTGCTGTGGCTGGGGATGGGAGTGTCGCCGGTGCCGCCACCGC CGGTGATTCGGTTGTCAGCGATGCTGGGGTTGCCCTTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTAGTAGTAAA GCTTGTTCTCCTGGAAGCGGCGGCAGTGATGGCGGCGTACCTGGTGGTGG TGGTGCTGGTGCTGCTCCTCCTGCCGCTGGTGCTGCTCCTCCTGCTGCTC GTGGTGGTGGTGCTGCTGCTCCCCCTGCTACTGCTGCTGCTCCTCCCCCT GCTGCTGCTGCTGCTGGTGCTTGTGCTGGTTCTGGTGCTGCTCCTCCTGC TGCTGTTGATGATACTGTTGCTGCTAGTTCTGGTGCTAGTGCTGCTGGTG CTGTCGCTCCTGTCGCCAGCAACGTAGGAACGGCGGCGGTGGCGTCTCCC CTAGGCCGGGTGTCCAAGCGCGTCGCCGCCCGGGCGGCAGAGCAGGCCAA GGCGGCGGCGGCGGCGGCGGAGGCGGAGGCGGAGCTGGCGGCGGCGGCCC TGGAAGCGAAGGCGCGCCGCAAAGAGGCCGCCGCCGCGGCTAAGAAGAGC AAGAAGAAGGCTTCCAAGGCGGCGGCGGCGGCGACGACGACGATCATCTC CGGAGATTTCCCACCGGTGGTCTCCGGAGATTCCCTCCCAGCGTCACACA AGAAAGGGGTCACCATCGGTATGACTACTCCCACGGAAGGCGTTCCGCAT GGCCCCAAGACGCGCGTCATATTGGGGAACATACCGCCGGCTGCTGGAAC GGCGGGGAAGCCCGCCAAGCTAGCCTCGATCTTCCTTCCCAGGGCGGGCG GCTTGGGGAGCGCGGCGCCTGCGGCGGGTCCGAAGCTGGCGCCGCTCTTC ATGCCCAAGAGGAAGGCTAGCCCTGAGACCATTGGCGGCGGCAGCGGCGG CGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTCGTCGTAGTGGCGGTGGTG GGGAGAAAGAGAAAGAGAAAGAAAAGAGCGGACGGAAAGAGGCTTCTCTT CCTTCTTCGGCGGCTCCTCCGAGCATCGAGGTGCGCTAA back to top
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