mRNA_Ecto-sp13_S_contig16463.4659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Match: D8LJJ2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ2_ECTSI) HSP 1 Score: 563 bits (1450), Expect = 1.450e-196 Identity = 296/306 (96.73%), Postives = 299/306 (97.71%), Query Frame = 1
Query: 1 GMMGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRKREQEEALLAKLREQSKCKVNWNFSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRRSLEDRFIEQTAAKVVWPRLMYDPFDDDYNMDDHDPATSVGSTSLSKSVGDNKSRGSSNKYNNNEPGDVSREPSARRRRRPKISASTAEFLAQIRK 918
GMMGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRR REQEEALL KLREQSKCKVNW+FSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRHRAD KEKNFR+ LEDRFIEQTAAKVVWPRLMYDPFDDDYNMDDHDPATSVGST+LSKSVGDNKSRG SN NNNEPGDVSREPSARRRRRPKISASTAEFLAQIRK
Sbjct: 152 GMMGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRNREQEEALLTKLREQSKCKVNWSFSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRHRADLKEKNFRQRLEDRFIEQTAAKVVWPRLMYDPFDDDYNMDDHDPATSVGSTTLSKSVGDNKSRGRSNNDNNNEPGDVSREPSARRRRRPKISASTAEFLAQIRK 457
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Match: A0A6H5KBB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB4_9PHAE) HSP 1 Score: 307 bits (786), Expect = 9.970e-100 Identity = 168/192 (87.50%), Postives = 169/192 (88.02%), Query Frame = 1
Query: 394 MKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTE-----------------LMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRRSLEDRFIEQTAAKVVWPRLMYDPFDDDYNMDDHDPATSVGSTSLSKSVGDNKSRGSSNKYNNNEPGDVSREPSARRRRRPKISASTAEFLAQIRK 918
MKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTE LMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRR LEDRFIEQTAAKV WPRLMYDPFD+DYNMDDHDPATSV STSLSKSVGDNKSRGSSN NNNE GDVSREPSARRRRRPKISASTAEFLAQIRK
Sbjct: 1 MKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTETFTLAADTYTREHARTKLMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRRRLEDRFIEQTAAKVEWPRLMYDPFDEDYNMDDHDPATSVRSTSLSKSVGDNKSRGSSNNDNNNETGDVSREPSARRRRRPKISASTAEFLAQIRK 192
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Match: A0A835YPN5_9STRA (EF-hand domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPN5_9STRA) HSP 1 Score: 144 bits (363), Expect = 7.050e-35 Identity = 83/233 (35.62%), Postives = 125/233 (53.65%), Query Frame = 1
Query: 7 MGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRKREQEEALLAKLREQSKCKVNWNFSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMGREERAKNLAEAERQRHRADTKEKNFRRSLEDRFIEQTAAKVVWPRLMYDPF 705
M T FREQL+ FGL+L+ E+G L+ F +D +F F L R A++ + ++E R ++ ++++L +VNW+ S+ L +A A+ YD+ R + + MD T F QL F +RL ELGA+F FD D +DG E ++ FF++GREERAK LAEAER R R + K + F SL+ R + ++ AKV WP + +DP+
Sbjct: 261 MSATVFREQLKMRFGLKLSPGELGALMQEFGREGGKSIDGAQFMGHFTQLGRHERYAQLQRQRRQDEALRXXXXRHQDEVVSRLGALVAARVNWSPSDAARATALNKVAKEAAHYDRDR-SIGLQNMLSGSMDVTGFNTQLRQGFGIRLSSAELGALFKVFDLDGGGTVDGAEFLNAFFKLGREERAKQLAEAERTRQRMEDKRRRFNESLQTRLVLRSTAKVEWPIMEFDPY 492
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Match: A0A6H5JI75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI75_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 3.380e-19 Identity = 67/183 (36.61%), Postives = 91/183 (49.73%), Query Frame = 1
Query: 7 MGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRKREQEEALLAKLREQSKCKVNWNFSEDELKRGLKMIAVAASTYDKARLGA-DINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMG 552
M P FREQLR +F ++LT AE+GG++ FD DG VD EF F + D + T ++R+ E EE A K+N ++SE + + I AA+ YDK A ++ +M+P FR QL F +RL P ELGA AFDKD I E + FFR+G
Sbjct: 415 MPPHVFREQLRKVFNIKLTPAELGGVMHRFDKDDDGTVDVVEFTKMFFKMGFDERNRR---------TKKKREAEAEERKNA-------LKINRSYSERHYQSAMAKITKAAARYDKNHPSAVSLDAFDGAQMEPHVFREQLKRAFGIRLTPPELGAAIHAFDKDGDGSISCPEFLRTFFRLG 581
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Match: D8LDZ3_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ3_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 4.470e-16 Identity = 60/183 (32.79%), Postives = 84/183 (45.90%), Query Frame = 1
Query: 7 MGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRKREQEEALLAKLREQSKCKVNWNFSEDELKRGLKMIAVAASTYDKARLGA-DINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMG 552
M P FREQLR +F ++LT AE+GG++ FD DG VD EF F + D + ++ K+N ++SE + + I AA+ YDK A ++ +M+P FR QL F ++L P ELGA AFDKD I E + FFR+G
Sbjct: 107 MPPHVFREQLRKVFNIKLTPAELGGVMHRFDKDDDGTVDVVEFTKMFFKMGFDERNRRTKXXXXXXXXXXXXXXXXXXXXXXXXXRKNALKINRSYSERHYQSAMAKITKAAARYDKNHPSAVSLDAFDGAQMEPHVFREQLKRAFGIQLTPPELGAAIHAFDKDGDGSISCPEFLRTFFRLG 289
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Match: A0A835Z644_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z644_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 4.040e-14 Identity = 62/186 (33.33%), Postives = 93/186 (50.00%), Query Frame = 1
Query: 7 MGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRKREQEEALL---AKLREQSKCKVNWNFSEDELKRGLKMIAVAASTYDKARLG-ADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNSKLIDGTELMHEFFRMG 552
M P F+EQL+ +F + LTR E+G L+ FD DG VD EF F + AA+ A + R AR R A+ +S V +F+E +L+ L +I AAS YD+ LG + +M P + QL +F++R P +LGA+ FD D S ++ E ++ FF++G
Sbjct: 606 MAPHVFKEQLKRVFNIVLTRPELGALMRHFDKDGDGSVDCAEFLLSFF---KTGFAARNAALERRRRAARARXXXXXXXXXXXXAEYEARSAAAVA-SFTERDLEEALDLILKAASRYDRQALGPGGLEGWCLYRMTPYQLKDQLHRSFQIRPTPPQLGAIMAMFDLDRSGTVEIPEFLNAFFKIG 787
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Match: A0A482SEP7_9ARCH (EF-hand domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEP7_9ARCH) HSP 1 Score: 80.1 bits (196), Expect = 6.000e-13 Identity = 57/215 (26.51%), Postives = 106/215 (49.30%), Query Frame = 1
Query: 4 MMGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTLARDSHAAKVAEGQARNETARRRKREQEEALLAKLREQSKCKVNWNFSEDELKRGLKMIAVAASTYDKARLGADINRIAQMKMDPTAFRAQLLMNFRVRLGPGELGAVFTAFDKDNS-KLIDGTELMHEFFRMGREERAKNLAEA-ERQRHRADTKEKNFRRSLE 642
+M P FRE +++IFG++ T E+G L+S +D + G + K+F +F + K E + + A + +++ E + +L E+S +V+ +F+ ++ K + V + YDK A + P +FR + F + L P E+GA+ F +N+ + DG + + F R+G + R+K E + QR A+ +K L+
Sbjct: 39 LMPPGVFRENIKSIFGVKATPKEIGYLMSVYDKDQCGSIHTKDFLIKFFAQGKTIRDDKRKESLIKQQEALKLAKQEAELKVLQLTEKSDYQVDQHFTLEDFYEAEKRMLVESEKYDKTHPSAPNLDGFNGPISPGSFRELMKRAFNIYLNPREVGAILQRFHAENNINIFDGKKFIIYFIRLGYDVRSKRKREVLKEQRETAEQMKKEXXXKLQ 253 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16463.4659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16463.4659.1 >prot_Ecto-sp13_S_contig16463.4659.1 ID=prot_Ecto-sp13_S_contig16463.4659.1|Name=mRNA_Ecto-sp13_S_contig16463.4659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp MMGPTTFREQLRTIFGLRLTRAEVGGLISAFDLHRDGMVDAKEFAFRFHTback to top mRNA from alignment at Ecto-sp13_S_contig16463:561..3639- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16463.4659.1 ID=mRNA_Ecto-sp13_S_contig16463.4659.1|Name=mRNA_Ecto-sp13_S_contig16463.4659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16463:561..3639- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16463:561..3639- >mRNA_Ecto-sp13_S_contig16463.4659.1 ID=mRNA_Ecto-sp13_S_contig16463.4659.1|Name=mRNA_Ecto-sp13_S_contig16463.4659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16463:561..3639- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |