mRNA_Ecto-sp13_S_contig1646.4657.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1646.4657.1
Unique NamemRNA_Ecto-sp13_S_contig1646.4657.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0A6H5KTD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 4.980e-40
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 1
Query:    4 VVRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDS 258
            VVRTLLIEGADPDSFDS GRTPLYLACLLGKVAVARALLAAGA+VS RV+KEPKDAPLDAAATEGHAEVMRLLVERGAV  AVD+
Sbjct:   66 VVRTLLIEGADPDSFDSNGRTPLYLACLLGKVAVARALLAAGAHVS-RVVKEPKDAPLDAAATEGHAEVMRLLVERGAVEPAVDA 149          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: D8LTQ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ8_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 7.280e-17
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1
Query:  130 ANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFA 285
            ANVSLRVLKE K APLD AA +GHAE MRLLVERGAVVTAVDSKGRTALHFA
Sbjct:  157 ANVSLRVLKEAKYAPLDVAAAQGHAEGMRLLVERGAVVTAVDSKGRTALHFA 208          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0A812ICP3_9DINO (Kidins220 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812ICP3_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 2.010e-9
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    7 VRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGA 237
            VRTLL +  DPD  D++GRT LYLA   G   + + LL A A+ +L V    +  PL AAAT GH E  RLL+  GA
Sbjct:  102 VRTLLEKPQDPDGEDARGRTALYLAAHTGNEGITKLLLEAAADANLTVKDRGETPPLLAAATTGHVEAARLLINSGA 178          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0A7X3XUE7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XUE7_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 1.820e-7
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    7 VRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFA 285
            VR LL +GAD ++  S G T L+ A     +A+A+ALL AGA       +     PL  A+  GHAEV RL++E GA    + S G TA+HFA
Sbjct:   60 VRALLRQGADVNTAQSDGMTALHWAASNNDIAIAKALLYAGATYRATT-RIGGYTPLHLASRGGHAEVARLILEDGADPDILTSTGVTAMHFA 151          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0A7S3UV44_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV44_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 5.210e-7
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    4 VVRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVS----------LRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALH 279
            VV  LL  GADP+  +S   TPL   C  G   +AR L+ AGA V              L+ P  APL  AA  G AE++RLL++RGA     ++ G TALH
Sbjct:  184 VVEELLAAGADPNVENSLTWTPLLECCHRGFTHLARVLVDAGARVDHLPDAEVCARAPFLRAPPQAPLAEAARVGAAEIVRLLLDRGADKDRTNALGWTALH 285          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0A8H6FEC1_9LECA (ZZ-type domain-containing protein n=1 Tax=Letharia lupina TaxID=560253 RepID=A0A8H6FEC1_9LECA)

HSP 1 Score: 57.8 bits (138), Expect = 6.420e-7
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1
Query:   16 LLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFA 285
            LL +  D D  D +G+TPL+ A  LGK  + R LL  GANV           PL  +A + +  ++  L+E GA V A++SKG TAL++A
Sbjct:  183 LLQQQVDVDRPDEEGKTPLFHASTLGKAFIVRRLLDTGANVHCTA---GSVTPLHVSAEKNYTSIVDYLLEAGADVNALNSKGNTALYWA 269          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0L850_MAGMM (Ankyrin repeat-like protein n=1 Tax=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) TaxID=156889 RepID=A0L850_MAGMM)

HSP 1 Score: 57.0 bits (136), Expect = 1.230e-6
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    4 VVRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAG-ANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFA 285
            +V+ LL  GAD    D  G TPL+ A +  ++A A ALL +G  +V  R   E     L+ A  +GH E+++LL+E+GA  T  D  G T LH A
Sbjct:  902 MVKLLLAVGADATLADEFGNTPLHNAAINNELACAEALLGSGKGDVDARA--EHILTALNMAVIQGHVEMVKLLLEKGADATLADEDGNTPLHVA 994          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0A8K1CNB4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNB4_PYTOL)

HSP 1 Score: 56.6 bits (135), Expect = 1.690e-6
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    4 VVRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFA 285
            +V  LL  GAD ++   +G T LYLA   G V++ + L+ AGA V   V  E +  PL AA    HA+V+ LL++RGAV+   +S  +TALH+A
Sbjct:   54 IVAFLLACGADTEAH-KEGPTALYLAATRGYVSIIKRLVDAGATVDTTVT-EKQVTPLLAATMFRHADVVELLLDRGAVLDRQNSDLQTALHWA 145          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: A0A6I6AIJ7_9PLAN (Ankyrin repeat domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AIJ7_9PLAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.980e-6
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    4 VVRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVSLRVLKEPKD-APLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFA 285
            +V+ L+  GAD +    +  TP+Y A   G   + R L+  G   SL    E K+  PL  AA EG  E+ RLL+E GA + ++DSKGRT L  A
Sbjct:   96 IVKLLVESGADINHL-CRCYTPIYGAVCSGNPEIVRYLIQRGVTKSLNYKCEWKENTPLQRAAYEGLIEIARLLIEAGADINSIDSKGRTPLDLA 189          
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Match: I0IFW9_PHYMF (Uncharacterized protein n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) TaxID=1142394 RepID=I0IFW9_PHYMF)

HSP 1 Score: 54.7 bits (130), Expect = 2.070e-6
Identity = 43/102 (42.16%), Postives = 54/102 (52.94%), Query Frame = 1
Query:    7 VRTLLIEGADPDSFDSK------GRTPLYLA---CLLGKVAVARALLAAGANVSLRVLKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFA 285
            VRTLL  G  PD  + K      G TPL+ A    L G + VA  LLAAGA V+ R   E    PL  AA+ GH ++++ L+E GA  T  D +GRT    A
Sbjct:   33 VRTLLDSGVSPDLPNRKEPNGDGGNTPLWFAVQGALGGGMPVADVLLAAGAEVNGRC--EYGTTPLHMAASWGHLDMVKCLIEHGADPTTPDDEGRTPRQMA 132          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1646.4657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTD7_9PHAE4.980e-4091.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTQ8_ECTSI7.280e-1788.46Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A812ICP3_9DINO2.010e-948.05Kidins220 protein n=1 Tax=Symbiodinium natans TaxI... [more]
A0A7X3XUE7_9BACT1.820e-743.01Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
A0A7S3UV44_HETAK5.210e-741.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8H6FEC1_9LECA6.420e-740.00ZZ-type domain-containing protein n=1 Tax=Letharia... [more]
A0L850_MAGMM1.230e-640.00Ankyrin repeat-like protein n=1 Tax=Magnetococcus ... [more]
A0A8K1CNB4_PYTOL1.690e-642.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6I6AIJ7_9PLAN1.980e-640.00Ankyrin repeat domain-containing protein n=2 Tax=G... [more]
I0IFW9_PHYMF2.070e-642.16Uncharacterized protein n=1 Tax=Phycisphaera mikur... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1646contigEcto-sp13_S_contig1646:10722..11159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score86.7
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D8LTQ8
Model size438
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size438
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.517715-CDS-Ecto-sp13_S_contig1646:10721..111591681462865.517715-CDS-Ecto-sp13_S_contig1646:10721..11159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1646 10722..11159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1646.4657.1prot_Ecto-sp13_S_contig1646.4657.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1646 10722..11159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1646.4657.1

>prot_Ecto-sp13_S_contig1646.4657.1 ID=prot_Ecto-sp13_S_contig1646.4657.1|Name=mRNA_Ecto-sp13_S_contig1646.4657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
LVVRTLLIEGADPDSFDSKGRTPLYLACLLGKVAVARALLAAGANVSLRV
LKEPKDAPLDAAATEGHAEVMRLLVERGAVVTAVDSKGRTALHFAAERGQ
VAAIEYLAETTADLNATDTDGHTPLLIAALRGQESAVDALCVAGAD
back to top

mRNA from alignment at Ecto-sp13_S_contig1646:10722..11159-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1646.4657.1 ID=mRNA_Ecto-sp13_S_contig1646.4657.1|Name=mRNA_Ecto-sp13_S_contig1646.4657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1646:10722..11159- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGTCGTGCGAACGCTGCTAATCGAAGGGGCGGATCCTGATTCGTTCGA CAGCAAAGGAAGAACGCCACTCTACCTGGCATGTCTCCTCGGTAAGGTGG CGGTGGCGAGAGCTCTCTTGGCCGCCGGGGCAAATGTTTCATTACGGGTT CTCAAGGAGCCCAAAGACGCCCCTTTGGACGCCGCAGCGACCGAAGGCCA TGCAGAGGTGATGAGGCTGCTAGTCGAGCGTGGGGCGGTGGTAACAGCGG TGGATAGCAAAGGTCGCACGGCTCTCCATTTTGCTGCTGAACGCGGACAG GTAGCTGCCATTGAGTACCTCGCAGAGACCACAGCTGATCTCAACGCCAC CGATACCGATGGGCACACACCTCTCTTGATCGCAGCGTTACGAGGCCAGG AGTCAGCTGTGGACGCCCTCTGTGTTGCAGGGGCCGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1646:10722..11159-

>mRNA_Ecto-sp13_S_contig1646.4657.1 ID=mRNA_Ecto-sp13_S_contig1646.4657.1|Name=mRNA_Ecto-sp13_S_contig1646.4657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1646:10722..11159- (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGTCGTGCGAACGCTGCTAATCGAAGGGGCGGATCCTGATTCGTTCGA
CAGCAAAGGAAGAACGCCACTCTACCTGGCATGTCTCCTCGGTAAGGTGG
CGGTGGCGAGAGCTCTCTTGGCCGCCGGGGCAAATGTTTCATTACGGGTT
CTCAAGGAGCCCAAAGACGCCCCTTTGGACGCCGCAGCGACCGAAGGCCA
TGCAGAGGTGATGAGGCTGCTAGTCGAGCGTGGGGCGGTGGTAACAGCGG
TGGATAGCAAAGGTCGCACGGCTCTCCATTTTGCTGCTGAACGCGGACAG
GTAGCTGCCATTGAGTACCTCGCAGAGACCACAGCTGATCTCAACGCCAC
CGATACCGATGGGCACACACCTCTCTTGATCGCAGCGTTACGAGGCCAGG
AGTCAGCTGTGGACGCCCTCTGTGTTGCAGGGGCCGAC
back to top