prot_Ecto-sp13_S_contig16451.4653.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16451.4653.1
Unique Nameprot_Ecto-sp13_S_contig16451.4653.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length210
Homology
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 6.140e-138
Identity = 203/209 (97.13%), Postives = 207/209 (99.04%), Query Frame = 0
Query:    1 MKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERYQQQSFLKGD 209
            MKYLATYDGAT+AELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAV QL+ DPKYSAVHELLHIFSVEKLGEY+AFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERYQQQSF+KGD
Sbjct:  198 MKYLATYDGATTAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVTQLKADPKYSAVHELLHIFSVEKLGEYMAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERYQQQSFMKGD 406          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA)

HSP 1 Score: 226 bits (575), Expect = 4.960e-69
Identity = 120/203 (59.11%), Postives = 149/203 (73.40%), Query Frame = 0
Query:    1 MKYLATYDG-----ATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNE 198
            MKYL T+D       TSA+  EV+AAA RG +GAVK+PIVSF E HNLLGM+AV +L  DP+Y+ V+ELL IF  EKL  Y+AF + N   L  + I HD CV +MRLLSLCSL +E +E+PY V+++TLQV  +D VE+WVLQA Q GLMEA+MDQ+++VV+I RCT RVFG  QW +LQ KLG W ANV  LL  IQ+SNE
Sbjct:  197 MKYLVTFDNDAEGSKTSAK--EVRAAAARGAVGAVKAPIVSFMEHHNLLGMSAVQELRNDPEYAQVYELLRIFGEEKLETYLAFAKANQALLEKHGISHDECVGNMRLLSLCSLGSEAQEVPYSVISETLQVDPED-VEEWVLQATQAGLMEARMDQLEKVVLISRCTCRVFGKEQWLSLQAKLGQWKANVSGLLQTIQRSNE 396          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A7S2CTT4_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTT4_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.780e-56
Identity = 102/196 (52.04%), Postives = 140/196 (71.43%), Query Frame = 0
Query:    1 MKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKS 196
            ++YLAT+D  TS  +   KAA  +G IGA++ PI+ F E+HNLLGM A+ QLE D +Y  ++ELL IFSV KL EY+ F+E    T+    ++H+ C+++MRLLSLCSLATEHEEIPY  +A+TL+V  + EVE WV+      LM+AKMDQ+Q+VV+I RCT+RVF  +QWK L  +L TW  NV+ +L  IQ++
Sbjct:  187 IRYLATFDD-TSDAVDTSKAA--QGAIGAIRKPILCFMERHNLLGMTAMQQLENDAEYGKLYELLRIFSVGKLREYLNFYEAEKGTMERYGLEHEECIANMRLLSLCSLATEHEEIPYAAIAETLEVPLE-EVEYWVVATTTAKLMDAKMDQLQQVVMISRCTHRVFEHSQWKQLAERLTTWKINVRNILETIQRT 378          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A7S2MXL1_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXL1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 5.050e-47
Identity = 85/182 (46.70%), Postives = 117/182 (64.29%), Query Frame = 0
Query:   17 EVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNE 198
            E   AA    +GA++ P+  FTEQ  +L M A+  L  +P    +H LL IF   KL +Y AF   N+ TL +  + +D CV +MRLLSLCSLA EHEEIPY  +A TL V  D+EVE WV+ A+ +GL+ AKMDQ+Q+VV++ RC  R FG  QWK LQ++L  W  NV+ +L  +++S +
Sbjct:  236 EALTAAKEASVGAIQDPVTLFTEQRGMLVMPAIVALGKNPATKPLHSLLTIFQEGKLQDYDAFVTTNSPTLTEYGLSNDDCVRNMRLLSLCSLAAEHEEIPYSAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMDQWKVLQVRLNDWKKNVKGVLDGLKQSQQ 416          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A6S8Z843_9STRA (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8Z843_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.560e-46
Identity = 85/182 (46.70%), Postives = 115/182 (63.19%), Query Frame = 0
Query:   17 EVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNE 198
            E   AA    +GA++ P+  FTEQ  +L M A+  L  +P    +H LL IF   KL +Y AF   N+ TL +  + +D CV  MRLLSLCSLA EHEEIPY  +A TL V  D+EVE WV+ A+ +GL+ AKMDQ+Q+VV++ RC  R FG  QWK LQ +L  W  NV+ +L  +++S +
Sbjct:  225 EALTAAKDASVGAIQDPVALFTEQRGMLVMPAIVGLGNNPATKQLHALLQIFQEGKLQDYDAFVTNNSPTLTEYGLSNDDCVRYMRLLSLCSLAAEHEEIPYGAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMEQWKMLQTRLNDWKRNVKGVLDGLKQSQQ 405          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A067FZM4_CITSI (Eukaryotic translation initiation factor 3 subunit M n=5 Tax=Citrus TaxID=2706 RepID=A0A067FZM4_CITSI)

HSP 1 Score: 165 bits (418), Expect = 9.120e-46
Identity = 92/198 (46.46%), Postives = 129/198 (65.15%), Query Frame = 0
Query:    2 KYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNE 198
            KYLAT+ G  +  + E K  AVR  I  VKSP +    Q +LL M A+ QLE D KY++V++LL IF  ++L  Y+ F   N+  L    + H+ C++ MRL+SL  L + E  +IPY ++ DTLQ++ D EVE WV++A    LM+ KMDQM +VV++RRCT RVFG  QW+TL+ KL TW ANV  ++S IQ +N+
Sbjct:  203 KYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMF---QCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINND-EVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNK 396          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A5D2NYP3_GOSTO (PCI domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2NYP3_GOSTO)

HSP 1 Score: 161 bits (407), Expect = 1.030e-45
Identity = 89/194 (45.88%), Postives = 126/194 (64.95%), Query Frame = 0
Query:    2 KYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLA-TEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 194
            KYLAT+ G  S  ++E K  AVR  I  VK+P +    Q +LL + AVAQLE D KY+ V++LL IF  +KL  Y+ F   N+  +    + H+ C++ MRL+SL  L   E  +IPY ++ DTL+++ DDEVE WV++AI   LM+ KMDQM +VV++ RC+  +FGP QW +L+ KL TW  NV +L+S IQ
Sbjct:   56 KYLATFSGEDSYIISEAKEEAVRSVIEFVKAPDMF---QCDLLDIPAVAQLEKDSKYALVYQLLKIFLTQKLDAYLEFQAANSTLMKSYGLVHEDCITKMRLISLVDLGLNESGQIPYALIKDTLRIN-DDEVELWVVKAITAKLMDCKMDQMNQVVIVSRCSEHIFGPHQWLSLRSKLATWRGNVASLISTIQ 245          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A2I4EC20_JUGRE (Eukaryotic translation initiation factor 3 subunit M n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4EC20_JUGRE)

HSP 1 Score: 164 bits (414), Expect = 3.340e-45
Identity = 90/195 (46.15%), Postives = 127/195 (65.13%), Query Frame = 0
Query:    1 MKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHE-EIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 194
            +KYLAT+ G  +  ++E K  AVR  +  VK+P +    Q +LL M AV QLE D KY+ V++LL IF  ++L  Y+ FH  N+  L    + H+ C++ MRL+SL  LA++   +IPY V+ DTL V+ DDEVE WV++AI   L++ KMDQM +VV++ RCT RVFG  QW+TL  KL TW  N+  ++S IQ
Sbjct:  202 VKYLATFSGEDAYTMSEAKEEAVRAIVEFVKAPDMF---QCDLLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFHAANSTLLKSCGLVHEDCITKMRLMSLVDLASDDSGQIPYAVIRDTLGVN-DDEVELWVVKAITVKLIDCKMDQMNQVVIVSRCTERVFGQHQWETLGTKLATWRGNIANVISTIQ 392          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: UPI001CC61758 (eukaryotic translation initiation factor 3 subunit M-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC61758)

HSP 1 Score: 162 bits (411), Expect = 9.060e-45
Identity = 85/193 (44.04%), Postives = 123/193 (63.73%), Query Frame = 0
Query:    2 KYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 194
            KYL T+ G  +  ++E K  AVR  +  VK+P +    Q +LL M AV QLE D KYS V++LL IF   +L  Y+ FH  N+  L    + H+ C++ MRL++L  L + H EIPY ++ DTL+V+ DDEVE WV++AI   L++ KMDQM +VV++ RCT RVFG  QW  L+ KL +W  N+  +++ +Q
Sbjct:  203 KYLTTFSGEDAYTMSEAKEEAVRAIVEFVKAPDMF---QSDLLDMPAVGQLEKDGKYSLVYQLLKIFLTHRLDAYLDFHAANSTLLKSYGLVHEDCIAKMRLMTLADLGSNHGEIPYDLIKDTLRVN-DDEVELWVVKAITVKLLDCKMDQMNQVVIVNRCTERVFGLHQWLALRSKLTSWRGNIANVINTVQ 391          
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A7J8YCU5_GOSAI (PCI domain-containing protein n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8YCU5_GOSAI)

HSP 1 Score: 158 bits (399), Expect = 9.170e-45
Identity = 85/194 (43.81%), Postives = 124/194 (63.92%), Query Frame = 0
Query:    2 KYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 194
            KYLAT+ G  S  + E K  AVR  I  VK+P   + +   LL M AV QLE D KY+ V++LL IF  ++L  Y+ F   N+  +    + H+ C++ MRL+SL  L + E  +IPY ++ D L+++ DDEVE W+++AI   L++ KMDQM +VV++ RCT R+FG  QW +L++KL TW  NV +L+S IQ
Sbjct:   35 KYLATFSGEDSYVIGEAKEEAVRAVIEFVKAPDTFWCD---LLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFQAANSTLMKSYGLVHEDCITKMRLMSLVDLGSNESGQIPYALIKDALRIN-DDEVELWIVKAITAKLIDCKMDQMNQVVIVSRCTERIFGQHQWHSLRLKLATWRGNVASLISTIQ 224          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E6_ECTSI6.140e-13897.13Eukaryotic translation initiation factor 3 subunit... [more]
A0A835Z3J7_9STRA4.960e-6959.11Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2CTT4_9STRA2.780e-5652.04Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2MXL1_9STRA5.050e-4746.70Eukaryotic translation initiation factor 3 subunit... [more]
A0A6S8Z843_9STRA8.560e-4646.70Eukaryotic translation initiation factor 3 subunit... [more]
A0A067FZM4_CITSI9.120e-4646.46Eukaryotic translation initiation factor 3 subunit... [more]
A0A5D2NYP3_GOSTO1.030e-4545.88PCI domain-containing protein n=2 Tax=Gossypium Ta... [more]
A0A2I4EC20_JUGRE3.340e-4546.15Eukaryotic translation initiation factor 3 subunit... [more]
UPI001CC617589.060e-4544.04eukaryotic translation initiation factor 3 subunit... [more]
A0A7J8YCU5_GOSAI9.170e-4543.81PCI domain-containing protein n=1 Tax=Gossypium ar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 92..182
e-value: 1.3E-20
score: 84.5
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 60..160
e-value: 7.7E-15
score: 55.3
IPR000717Proteasome component (PCI) domainPROSITEPS50250PCIcoord: 1..164
score: 20.308
NoneNo IPR availableSMARTSM00753PINTcoord: 92..182
e-value: 1.3E-20
score: 84.5
NoneNo IPR availableGENE3D1.25.40.570coord: 9..173
e-value: 8.7E-24
score: 85.9
NoneNo IPR availablePANTHERPTHR15350COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17coord: 2..203
NoneNo IPR availablePANTHERPTHR15350:SF2EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Mcoord: 2..203
IPR040750eIF3 subunit M, C-terminal helix domainPFAMPF18005eIF3m_C_helixcoord: 165..193
e-value: 1.4E-9
score: 37.5
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 97..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16451contigEcto-sp13_S_contig16451:596..3775 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16451.4653.1mRNA_Ecto-sp13_S_contig16451.4653.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16451 587..3775 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16451.4653.1 ID=prot_Ecto-sp13_S_contig16451.4653.1|Name=mRNA_Ecto-sp13_S_contig16451.4653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVA
QLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSS
MRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKM
DQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERY
QQQSFLKGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR040750eIF3m_C_helix
IPR036390WH_DNA-bd_sf