mRNA_Ecto-sp13_S_contig16451.4653.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16451.4653.1
Unique NamemRNA_Ecto-sp13_S_contig16451.4653.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: D7G6E6_ECTSI (Eukaryotic translation initiation factor 3 subunit M n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6E6_ECTSI)

HSP 1 Score: 405 bits (1041), Expect = 1.040e-139
Identity = 205/212 (96.70%), Postives = 210/212 (99.06%), Query Frame = 1 
Query:    1 QFLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERYQQQSFLKGD 636
            +FLMKYLATYDGAT+AELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAV QL+ DPKYSAVHELLHIFSVEKLGEY+AFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERYQQQSF+KGD
Sbjct:  195 KFLMKYLATYDGATTAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVTQLKADPKYSAVHELLHIFSVEKLGEYMAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERYQQQSFMKGD 406
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A835Z3J7_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J7_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.240e-70
Identity = 122/205 (59.51%), Postives = 151/205 (73.66%), Query Frame = 1 
Query:    4 FLMKYLATYDG-----ATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNE 603
            FLMKYL T+D       TSA+  EV+AAA RG +GAVK+PIVSF E HNLLGM+AV +L  DP+Y+ V+ELL IF  EKL  Y+AF + N   L  + I HD CV +MRLLSLCSL +E +E+PY V+++TLQV  +D VE+WVLQA Q GLMEA+MDQ+++VV+I RCT RVFG  QW +LQ KLG W ANV  LL  IQ+SNE
Sbjct:  195 FLMKYLVTFDNDAEGSKTSAK--EVRAAAARGAVGAVKAPIVSFMEHHNLLGMSAVQELRNDPEYAQVYELLRIFGEEKLETYLAFAKANQALLEKHGISHDECVGNMRLLSLCSLGSEAQEVPYSVISETLQVDPED-VEEWVLQATQAGLMEARMDQLEKVVLISRCTCRVFGKEQWLSLQAKLGQWKANVSGLLQTIQRSNE 396
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A7S2CTT4_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTT4_9STRA)

HSP 1 Score: 198 bits (503), Expect = 1.260e-58
Identity = 105/199 (52.76%), Postives = 143/199 (71.86%), Query Frame = 1 
Query:    1 QFLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKS 597
            QFL++YLAT+D  TS  +   KAA  +G IGA++ PI+ F E+HNLLGM A+ QLE D +Y  ++ELL IFSV KL EY+ F+E    T+    ++H+ C+++MRLLSLCSLATEHEEIPY  +A+TL+V  + EVE WV+      LM+AKMDQ+Q+VV+I RCT+RVF  +QWK L  +L TW  NV+ +L  IQ++
Sbjct:  184 QFLIRYLATFDD-TSDAVDTSKAA--QGAIGAIRKPILCFMERHNLLGMTAMQQLENDAEYGKLYELLRIFSVGKLREYLNFYEAEKGTMERYGLEHEECIANMRLLSLCSLATEHEEIPYAAIAETLEVPLE-EVEYWVVATTTAKLMDAKMDQLQQVVMISRCTHRVFEHSQWKQLAERLTTWKINVRNILETIQRT 378
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A067FZM4_CITSI (Eukaryotic translation initiation factor 3 subunit M n=5 Tax=Citrus TaxID=2706 RepID=A0A067FZM4_CITSI)

HSP 1 Score: 169 bits (429), Expect = 2.400e-47
Identity = 94/202 (46.53%), Postives = 132/202 (65.35%), Query Frame = 1 
Query:    1 QFLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNE 603
            +FL KYLAT+ G  +  + E K  AVR  I  VKSP +    Q +LL M A+ QLE D KY++V++LL IF  ++L  Y+ F   N+  L    + H+ C++ MRL+SL  L + E  +IPY ++ DTLQ++ D EVE WV++A    LM+ KMDQM +VV++RRCT RVFG  QW+TL+ KL TW ANV  ++S IQ +N+
Sbjct:  199 KFLTKYLATFSGEDAHTMDEAKEEAVRTIIEFVKSPDMF---QCDLLDMPAIGQLENDAKYASVYQLLKIFLTQRLDGYLEFQAGNSALLKSYGLVHEDCIAKMRLMSLVDLGSNESGQIPYGLIKDTLQINND-EVEKWVVKARTAKLMDCKMDQMNQVVIVRRCTERVFGQHQWQTLRTKLSTWRANVANVISTIQATNK 396
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A5D2NYP3_GOSTO (PCI domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5D2NYP3_GOSTO)

HSP 1 Score: 165 bits (418), Expect = 2.550e-47
Identity = 91/198 (45.96%), Postives = 129/198 (65.15%), Query Frame = 1 
Query:    1 QFLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLA-TEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 591
            +FL KYLAT+ G  S  ++E K  AVR  I  VK+P +    Q +LL + AVAQLE D KY+ V++LL IF  +KL  Y+ F   N+  +    + H+ C++ MRL+SL  L   E  +IPY ++ DTL+++ DDEVE WV++AI   LM+ KMDQM +VV++ RC+  +FGP QW +L+ KL TW  NV +L+S IQ
Sbjct:   52 KFLTKYLATFSGEDSYIISEAKEEAVRSVIEFVKAPDMF---QCDLLDIPAVAQLEKDSKYALVYQLLKIFLTQKLDAYLEFQAANSTLMKSYGLVHEDCITKMRLISLVDLGLNESGQIPYALIKDTLRIN-DDEVELWVVKAITAKLMDCKMDQMNQVVIVSRCSEHIFGPHQWLSLRSKLATWRGNVASLISTIQ 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A7S2MXL1_9STRA (Eukaryotic translation initiation factor 3 subunit M n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MXL1_9STRA)

HSP 1 Score: 169 bits (427), Expect = 5.610e-47
Identity = 85/182 (46.70%), Postives = 117/182 (64.29%), Query Frame = 1 
Query:   58 EVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNE 603
            E   AA    +GA++ P+  FTEQ  +L M A+  L  +P    +H LL IF   KL +Y AF   N+ TL +  + +D CV +MRLLSLCSLA EHEEIPY  +A TL V  D+EVE WV+ A+ +GL+ AKMDQ+Q+VV++ RC  R FG  QWK LQ++L  W  NV+ +L  +++S +
Sbjct:  236 EALTAAKEASVGAIQDPVTLFTEQRGMLVMPAIVALGKNPATKPLHSLLTIFQEGKLQDYDAFVTTNSPTLTEYGLSNDDCVRNMRLLSLCSLAAEHEEIPYSAIASTLHVK-DEEVESWVIAAVSSGLLSAKMDQLQQVVMVERCAVRKFGMDQWKVLQVRLNDWKKNVKGVLDGLKQSQQ 416
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A2I4EC20_JUGRE (Eukaryotic translation initiation factor 3 subunit M n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4EC20_JUGRE)

HSP 1 Score: 168 bits (426), Expect = 6.240e-47
Identity = 92/198 (46.46%), Postives = 130/198 (65.66%), Query Frame = 1 
Query:    1 QFLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHE-EIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 591
            +FL+KYLAT+ G  +  ++E K  AVR  +  VK+P +    Q +LL M AV QLE D KY+ V++LL IF  ++L  Y+ FH  N+  L    + H+ C++ MRL+SL  LA++   +IPY V+ DTL V+ DDEVE WV++AI   L++ KMDQM +VV++ RCT RVFG  QW+TL  KL TW  N+  ++S IQ
Sbjct:  199 KFLVKYLATFSGEDAYTMSEAKEEAVRAIVEFVKAPDMF---QCDLLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFHAANSTLLKSCGLVHEDCITKMRLMSLVDLASDDSGQIPYAVIRDTLGVN-DDEVELWVVKAITVKLIDCKMDQMNQVVIVSRCTERVFGQHQWETLGTKLATWRGNIANVISTIQ 392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A7J8YCU5_GOSAI (PCI domain-containing protein n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8YCU5_GOSAI)

HSP 1 Score: 162 bits (410), Expect = 2.250e-46
Identity = 87/198 (43.94%), Postives = 127/198 (64.14%), Query Frame = 1 
Query:    1 QFLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLAT-EHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 591
            +FL KYLAT+ G  S  + E K  AVR  I  VK+P   + +   LL M AV QLE D KY+ V++LL IF  ++L  Y+ F   N+  +    + H+ C++ MRL+SL  L + E  +IPY ++ D L+++ DDEVE W+++AI   L++ KMDQM +VV++ RCT R+FG  QW +L++KL TW  NV +L+S IQ
Sbjct:   31 KFLTKYLATFSGEDSYVIGEAKEEAVRAVIEFVKAPDTFWCD---LLDMPAVGQLEKDAKYALVYQLLKIFLTQRLDAYLEFQAANSTLMKSYGLVHEDCITKMRLMSLVDLGSNESGQIPYALIKDALRIN-DDEVELWIVKAITAKLIDCKMDQMNQVVIVSRCTERIFGQHQWHSLRLKLATWRGNVASLISTIQ 224
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: A0A7N2RF70_QUELO (Eukaryotic translation initiation factor 3 subunit M n=7 Tax=Fagaceae TaxID=3503 RepID=A0A7N2RF70_QUELO)

HSP 1 Score: 167 bits (422), Expect = 2.440e-46
Identity = 89/198 (44.95%), Postives = 133/198 (67.17%), Query Frame = 1 
Query:    1 QFLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHE-EIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 591
            +FL KYLAT+ G  +  ++E K  AVR  +  VK+P +    Q +LL M AV QLE D KY++V++LL IF  ++L  Y+ F   N+ +L    + H+ C++ MRL+SL  LA++   +IPY ++ DTL+++ DDEVE WV++AI   L++ KMDQM +VV++ RCT RVFG  QW+TL+ KL TW  N+ +++S IQ
Sbjct:  199 KFLTKYLATFSGEDAHIMSEAKEEAVRTIVEFVKAPDMF---QCDLLDMPAVGQLEKDAKYASVYQLLKIFLTQRLDAYLEFQAANSTSLKSYGLVHEDCITKMRLMSLVDLASDESGQIPYALIRDTLRIN-DDEVELWVVKAISAKLIDCKMDQMNQVVIVSRCTERVFGQNQWQTLKSKLSTWRGNIASVISTIQ 392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Match: UPI001CC61758 (eukaryotic translation initiation factor 3 subunit M-like n=2 Tax=Proteaceae TaxID=4328 RepID=UPI001CC61758)

HSP 1 Score: 166 bits (421), Expect = 3.350e-46
Identity = 87/196 (44.39%), Postives = 125/196 (63.78%), Query Frame = 1 
Query:    4 FLMKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVAQLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSSMRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKMDQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQ 591
            FL KYL T+ G  +  ++E K  AVR  +  VK+P +    Q +LL M AV QLE D KYS V++LL IF   +L  Y+ FH  N+  L    + H+ C++ MRL++L  L + H EIPY ++ DTL+V+ DDEVE WV++AI   L++ KMDQM +VV++ RCT RVFG  QW  L+ KL +W  N+  +++ +Q
Sbjct:  200 FLTKYLTTFSGEDAYTMSEAKEEAVRAIVEFVKAPDMF---QSDLLDMPAVGQLEKDGKYSLVYQLLKIFLTHRLDAYLDFHAANSTLLKSYGLVHEDCIAKMRLMTLADLGSNHGEIPYDLIKDTLRVN-DDEVELWVVKAITVKLLDCKMDQMNQVVIVNRCTERVFGLHQWLALRSKLTSWRGNIANVINTVQ 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16451.4653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E6_ECTSI1.040e-13996.70Eukaryotic translation initiation factor 3 subunit... [more]
A0A835Z3J7_9STRA1.240e-7059.51Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2CTT4_9STRA1.260e-5852.76Eukaryotic translation initiation factor 3 subunit... [more]
A0A067FZM4_CITSI2.400e-4746.53Eukaryotic translation initiation factor 3 subunit... [more]
A0A5D2NYP3_GOSTO2.550e-4745.96PCI domain-containing protein n=2 Tax=Gossypium Ta... [more]
A0A7S2MXL1_9STRA5.610e-4746.70Eukaryotic translation initiation factor 3 subunit... [more]
A0A2I4EC20_JUGRE6.240e-4746.46Eukaryotic translation initiation factor 3 subunit... [more]
A0A7J8YCU5_GOSAI2.250e-4643.94PCI domain-containing protein n=1 Tax=Gossypium ar... [more]
A0A7N2RF70_QUELO2.440e-4644.95Eukaryotic translation initiation factor 3 subunit... [more]
UPI001CC617583.350e-4644.39eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16451contigEcto-sp13_S_contig16451:587..3775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score401.4
Seed ortholog evalue2.7e-109
Seed eggNOG ortholog2880.D7G6E6
Preferred nameEIF3M
Model size639
KEGG koko:K15030
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001732,GO:0002020,GO:0002181,GO:0002183,GO:0002790,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005852,GO:0005856,GO:0006412,GO:0006413,GO:0006508,GO:0006518,GO:0006807,GO:0006810,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009306,GO:0009653,GO:0009893,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016282,GO:0016485,GO:0019222,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030162,GO:0031323,GO:0031325,GO:0031369,GO:0031638,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032991,GO:0033036,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043280,GO:0043281,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045862,GO:0046677,GO:0046903,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051604,GO:0051704,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070864,GO:0070865,GO:0070887,GO:0070993,GO:0071236,GO:0071310,GO:0071396,GO:0071541,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0089720,GO:0097202,GO:0097305,GO:0097306,GO:0097307,GO:0097308,GO:1900117,GO:1900119,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1990904,GO:2000116,GO:2001056,GO:2001270,GO:2001272
Exons6
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG2753@1,KOG2753@2759
Ec32 ortholog descriptionProteasome component (PCI) domain
Ec32 orthologEc-10_001570.1
Cds size630
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16451.4653.1prot_Ecto-sp13_S_contig16451.4653.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16451 596..3775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.2138948-UTR-Ecto-sp13_S_contig16451:586..5951681462865.2138948-UTR-Ecto-sp13_S_contig16451:586..595Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16451 587..595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.2271576-CDS-Ecto-sp13_S_contig16451:595..7151681462865.2271576-CDS-Ecto-sp13_S_contig16451:595..715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16451 596..715 +
1681462865.2375398-CDS-Ecto-sp13_S_contig16451:1418..15411681462865.2375398-CDS-Ecto-sp13_S_contig16451:1418..1541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16451 1419..1541 +
1681462865.2476301-CDS-Ecto-sp13_S_contig16451:1950..20641681462865.2476301-CDS-Ecto-sp13_S_contig16451:1950..2064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16451 1951..2064 +
1681462865.268522-CDS-Ecto-sp13_S_contig16451:2506..26681681462865.268522-CDS-Ecto-sp13_S_contig16451:2506..2668Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16451 2507..2668 +
1681462865.278221-CDS-Ecto-sp13_S_contig16451:2996..30731681462865.278221-CDS-Ecto-sp13_S_contig16451:2996..3073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16451 2997..3073 +
1681462865.2872322-CDS-Ecto-sp13_S_contig16451:3741..37751681462865.2872322-CDS-Ecto-sp13_S_contig16451:3741..3775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16451 3742..3775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16451.4653.1

>prot_Ecto-sp13_S_contig16451.4653.1 ID=prot_Ecto-sp13_S_contig16451.4653.1|Name=mRNA_Ecto-sp13_S_contig16451.4653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MKYLATYDGATSAELAEVKAAAVRGCIGAVKSPIVSFTEQHNLLGMAAVA
QLEVDPKYSAVHELLHIFSVEKLGEYIAFHEKNAKTLADNKIDHDSCVSS
MRLLSLCSLATEHEEIPYQVVADTLQVSGDDEVEDWVLQAIQTGLMEAKM
DQMQRVVVIRRCTNRVFGPAQWKTLQMKLGTWSANVQTLLSAIQKSNERY
QQQSFLKGD*
back to top

mRNA from alignment at Ecto-sp13_S_contig16451:587..3775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16451.4653.1 ID=mRNA_Ecto-sp13_S_contig16451.4653.1|Name=mRNA_Ecto-sp13_S_contig16451.4653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16451:587..3775+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTCTGATGAAGTACTTGGCCACGTACGACGGTGCGACCTCCGCGGA
GTTGGCCGAGGTTAAAGCGGCGGCGGTGAGGGGCTGCATCGGCGCCGTCA
AGTCCCCAATCGTCAGCTTTACAGAGCAGGTGTGACGTGGAAAATGGCAC
GGATGTGGCATCAATTGCGGTATATGTCCTTTGGTTGGGATCAATATTCG
GCGACGCGGAGATCATGGGAACTGGCAATGGCGCTCTCTGAGAATGCTTG
CTTGACTTTGACCTGTGTCGAGTCTCTCCTTCTCAACGGCTCAGACGCGC
GACTTCGTGTGTATTCTACTAACCTCCGTTTGAAGCGAGCGTGCTACGTT
TCTGGGTGCCGTCGTGCGTCTGATACAGTATGGCGTTGGTGTAGCACAGC
TATGCTTGTCAATGGTATCAATGTAAACTCTACGTACACAACAGCAGAGT
CACCGTAGCGCAGAATCACCTTCGTAGCGCAGAAGGCTAATCAGCAATGT
AGTTGTAGGGTTGGCAGGTTTTTTGGTTGTCTGGTAAATTCTCGTGCTAT
GGTCACCGTTTTTGTATACGGAGTACATGCATACTCCGTTCGGGGGCGTA
GGTTTGAGTTATTCCGCACTGCAGCAGAATTGGAACCAGACCTTCCAACC
ACCCACCCATTGAAATATGCATATGTGCTGTAGGTGAAGACGTGGTGTGT
ACAAAGCTTGGTGGCAGAAGCCACGACTGCCTTGTCCCAAACGAATGTGC
GCAGGTCGTGAGCACCCTTTGCGATGACTTGATCCCTCCGTTTCGTCTTG
TCCCTCGTCGCCACTACATACCTCGGCAACAGCACAACCTGCTGGGAATG
GCCGCTGTGGCGCAGCTGGAGGTTGACCCCAAATACTCGGCAGTTCACGA
GCTGCTGCACATTTTTTCGGTGGAGAAGCTTGGGGAGTACATTGCTTTCC
ATGAGGTGTGTGCATGTTTAGGTGTTTGGTTTTATCACGACAGTCCTACG
GCTGATGAACGGCAGGACGTAGACCTTCCTGAGAAAAAAACGCCAAACGC
CTTCTAGTCCACGGGGTTGCAGTGGATACTGAAGTACTTCTACACTTATG
CGGCAGTAGGCTAGTACGAAGCTAGCTTTTCTCACAGTACTTCGTATGTG
GGAAGGGATTGCTAGTGGCATCGCCTTGGACAGCACGTGTATCCATCAGT
CTGTCTGTCAGAGTAGACTGCCACCTTGTTGCCATATCGGTCCACGTGTG
GTAAAATATCGCTCGATCCTTCACCTTTCGTCAGGCAATTGTCGCTCACT
TATACATCTCGTGCCCCCGTATTTTTCCCCACTCGACCACCCTGCCCTCG
CCCTATTGCCGTAGAAAAACGCAAAGACTCTTGCTGACAACAAGATCGAC
CACGACAGCTGCGTGTCCAGCATGCGACTCCTGTCGCTATGCTCGCTTGC
CACGGAACACGAAGAAATTCCCTACCAGGTATATCTTGACGCTGGGCCAC
GTACATAGCGGCGGTGAACGGCGATGTTGAGCTTAACCTCCCATCCCATG
AAGCGCGCAACAAGAACATCACGCTATGTTGTCCTGCCCGTTTGGTGACG
TGGACGTAAGAAACACTGACATGCCTTTGGACGCGATAGTCGGTCGCCAA
GGAATCTAGCATCCCGGTTGTTTTCCAAGCCTTCAACATGTTCGATCCAC
CAGTGCACCGGTGAGGCAGCACAACAACGGCTCGTCGGGTCTAAAATATT
TCCTTGCCGCGCTGTGCGGTGCCATGCGGGCGTACGTTGGGTTTACACGT
TTAACATCCTTGCCTAGAAGACTCGTCGCAGGTTCCCTTTGATCTGACCC
AGGGCCGCTACAACGTTACACATTAGACTCCCCCGACCGTTTCGTCGTGC
CCTCGAAAACGCATCGGAAGGTGGTGGCCGACACTCTGCAGGTTTCCGGG
GACGACGAGGTGGAGGACTGGGTACTGCAGGCAATCCAGACGGGCCTGAT
GGAGGCCAAGATGGACCAGATGCAGCGAGTCGTTGTGATCAGGCGATGCA
CAAACCGCGTCTTCGGACCTGCACAGTGGAAGGTGACCGGACGTTTTACT
CTTGGGGCGATGCCGCTCCCTCAACGGGGGCGTTGTTTTGGACAGGGTGA
AGGAGCGGCGACGTTGACCGTTTTTGCCCAAAGGCTTGTGACTTATGCCG
AAAATCGTGTGTGTGATGCGTGCACATTGTGGAAAAGATGGCATGCCATC
CTTAAGGGGTGATAAGTGTAAAAACATTATTCGGTCCTCTGGCATGTATA
GAAGAACAGTCTTTCCGCCACTCAATCGCGTACGTTGTAACCCCGAAAGC
GACCCCTTTCCTTCCTCCGTGACACCTTCGTTTTCGGTGGTACCTCCTCG
ACCTTCGCAGACCTTGCAAATGAAGCTCGGGACGTGGAGTGCGAACGTTC
AAACACTCCTGTCGGCGATCCAGAAGAGCAATGAGCGGTAAGCGGTACCT
ATGCTTGAGGGAGGAGGGTACTCACAAAGCTCGCTGTATCGCAAGTCGCG
CCAAGTTTTTTTCTTGGCCAGAGCTCTGTCTCAACGGAGAGGATTTCGGT
TGCACAAAAGGGGGCGCCTTTGGATATATACTGGCGAGAGCTTGCGAACG
CAGGCCTTCGACACGGTAGCCAGGATTGAAATTGGGAGTTCTTGTGTAGT
TGCTAGTCTGCGAGAACCCTACAAGTGTTTGCAAACTACGTACACACCTT
GCAACTTGTGTCTACCCCTATGCCACACGTGGCGAACTGTTGACAGGGAA
GCAGTTGTATTTGCTGCTACACATGCTCCGTGGCACTGGCACCACCTTTT
TTCATTGCCATACGTTCGAGGGTACCGGTAATTGTGGGATGAATCACGAT
CGAAACAGTGCAGGTTTTCTGGAGTCCTCCTTTGTGCTTGTTTGATTATT
TCTTGGCCACAAATCGCTAATGCTTGGCTGATTTGGAGGTAGGTGTATCG
CCCAAACCTACTAAATTCCAGTTGTGTTTCGGCCCGTGTGTGCTACCGCT
GTAAATTACCCCTCGCACGATGCATGCCTGCAAACAACACGGGAGTATCG
ACGCTCCGCCCTAATACTTTTTCCGTTGTGTCAATGTCGTTGCACTTGGC
GGCAGGTACCAGCAGCAGAGCTTCTTGAAGGGGGACTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16451:587..3775+

>mRNA_Ecto-sp13_S_contig16451.4653.1 ID=mRNA_Ecto-sp13_S_contig16451.4653.1|Name=mRNA_Ecto-sp13_S_contig16451.4653.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16451:587..3775+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTACTTGGCCACGTACGACGGTGCGACCTCCGCGGAGTTGGCCGA
GGTTAAAGCGGCGGCGGTGAGGGGCTGCATCGGCGCCGTCAAGTCCCCAA
TCGTCAGCTTTACAGAGCAGCACAACCTGCTGGGAATGGCCGCTGTGGCG
CAGCTGGAGGTTGACCCCAAATACTCGGCAGTTCACGAGCTGCTGCACAT
TTTTTCGGTGGAGAAGCTTGGGGAGTACATTGCTTTCCATGAGAAAAACG
CAAAGACTCTTGCTGACAACAAGATCGACCACGACAGCTGCGTGTCCAGC
ATGCGACTCCTGTCGCTATGCTCGCTTGCCACGGAACACGAAGAAATTCC
CTACCAGGTGGTGGCCGACACTCTGCAGGTTTCCGGGGACGACGAGGTGG
AGGACTGGGTACTGCAGGCAATCCAGACGGGCCTGATGGAGGCCAAGATG
GACCAGATGCAGCGAGTCGTTGTGATCAGGCGATGCACAAACCGCGTCTT
CGGACCTGCACAGTGGAAGACCTTGCAAATGAAGCTCGGGACGTGGAGTG
CGAACGTTCAAACACTCCTGTCGGCGATCCAGAAGAGCAATGAGCGGTAC
CAGCAGCAGAGCTTCTTGAAGGGGGACTAA
back to top