mRNA_Ecto-sp13_S_contig16429.4637.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16429.4637.1
Unique NamemRNA_Ecto-sp13_S_contig16429.4637.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16429.4637.1 vs. uniprot
Match: A0A6H5L5H5_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H5_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 9.900e-98
Identity = 201/249 (80.72%), Postives = 207/249 (83.13%), Query Frame = 1 
Query:   10 ERRTTALASYLREESVRVEGGTGARTLSAGPGTSRIRRARDRPEGVGKEGDDDNGTEEKRAGNDAPRRSRYRQSGDXXXXXXXXXXXXXXXXXXXXXXGGMPSDSGEEDSLTMPGLGGVIVTQLTWGAGSGAWDAALKDAAGXXXXXXXXXXXXXXXXXXXASTAIETDRAGLVGTTSVAPPGNADVHGDDDLGTLATPPAEEDWDSSDAERRGGLERGAVETLDQLGEDEAERHRGDGSTRRSTFTEV 756
            ERRTTALASYLREESVRVEGGTGART  AGP TSRIRRA DRPE VGKEGDDDNGT EKRAG+DAPRR RYRQSGDXXXXXX                G +PSDSGEEDSLTMPGLGGVIVTQLTWGAGSGAWDAALKD   XXXXXXXXXXXXXXXXXXX  TAIETDR    GTTSVA PGNADVHGDDDLGT ATP  +EDW SSDAERRGG ERG V+TLDQ GE+EAE HRGDG+TRRSTFTEV
Sbjct:  211 ERRTTALASYLREESVRVEGGTGARTPIAGPDTSRIRRASDRPEEVGKEGDDDNGTNEKRAGDDAPRRLRYRQSGDXXXXXXQ---------------GEVPSDSGEEDSLTMPGLGGVIVTQLTWGAGSGAWDAALKDXXXXXXXXXXXXXXXXXXXXXXXXTAIETDR----GTTSVALPGNADVHGDDDLGTPATPLVDEDWGSSDAERRGGSERGTVQTLDQSGEEEAEGHRGDGNTRRSTFTEV 440
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16429.4637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5H5_9PHAE9.900e-9880.72Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16429contigEcto-sp13_S_contig16429:2618..3382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size765
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionIon transport domain
Ec32 orthologEc-10_000150.1
Cds size765
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.1447566-CDS-Ecto-sp13_S_contig16429:2617..33821681462864.1447566-CDS-Ecto-sp13_S_contig16429:2617..3382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16429 2618..3382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16429.4637.1prot_Ecto-sp13_S_contig16429.4637.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16429 2618..3382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16429.4637.1

>prot_Ecto-sp13_S_contig16429.4637.1 ID=prot_Ecto-sp13_S_contig16429.4637.1|Name=mRNA_Ecto-sp13_S_contig16429.4637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MLHERRTTALASYLREESVRVEGGTGARTLSAGPGTSRIRRARDRPEGVG
KEGDDDNGTEEKRAGNDAPRRSRYRQSGDGGGGGGQGEASATQQQQEEQG
QGGMPSDSGEEDSLTMPGLGGVIVTQLTWGAGSGAWDAALKDAAGDAAAE
GTGAATAAEAAVGAASTAIETDRAGLVGTTSVAPPGNADVHGDDDLGTLA
TPPAEEDWDSSDAERRGGLERGAVETLDQLGEDEAERHRGDGSTRRSTFT
EVCT*
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mRNA from alignment at Ecto-sp13_S_contig16429:2618..3382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16429.4637.1 ID=mRNA_Ecto-sp13_S_contig16429.4637.1|Name=mRNA_Ecto-sp13_S_contig16429.4637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16429:2618..3382+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCATGAGCGCCGAACGACCGCTCTCGCCTCCTACCTCCGTGAAGA
AAGCGTTCGGGTTGAGGGAGGGACAGGAGCAAGGACACTAAGCGCCGGCC
CCGGCACGAGTCGAATACGACGGGCGAGAGATAGGCCAGAGGGGGTGGGG
AAAGAAGGTGACGACGATAACGGTACGGAAGAGAAGAGGGCAGGGAACGA
CGCGCCGCGGAGATCGAGATACCGTCAGAGCGGAGACGGCGGCGGTGGCG
GTGGTCAAGGAGAGGCTTCCGCTACGCAGCAGCAGCAGGAGGAGCAGGGG
CAGGGTGGCATGCCCTCGGATAGCGGGGAGGAGGACTCCCTAACGATGCC
GGGGTTGGGCGGCGTTATTGTGACGCAGCTCACGTGGGGAGCCGGCAGCG
GTGCTTGGGACGCCGCACTGAAGGATGCGGCGGGGGACGCGGCGGCAGAA
GGGACAGGCGCAGCAACAGCAGCAGAAGCAGCAGTAGGTGCGGCATCAAC
AGCAATAGAAACGGACAGAGCAGGGCTTGTTGGCACCACTTCTGTCGCCC
CGCCAGGAAACGCAGACGTACACGGCGATGACGACCTCGGAACGCTTGCC
ACGCCGCCGGCAGAAGAAGACTGGGACTCATCAGATGCGGAGAGGAGGGG
GGGCTTGGAGCGGGGTGCGGTGGAGACGTTAGACCAGTTAGGAGAAGATG
AGGCAGAGAGACACCGCGGTGATGGTAGCACGCGAAGGTCTACCTTTACG
GAGGTGTGTACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16429:2618..3382+

>mRNA_Ecto-sp13_S_contig16429.4637.1 ID=mRNA_Ecto-sp13_S_contig16429.4637.1|Name=mRNA_Ecto-sp13_S_contig16429.4637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16429:2618..3382+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCATGAGCGCCGAACGACCGCTCTCGCCTCCTACCTCCGTGAAGA
AAGCGTTCGGGTTGAGGGAGGGACAGGAGCAAGGACACTAAGCGCCGGCC
CCGGCACGAGTCGAATACGACGGGCGAGAGATAGGCCAGAGGGGGTGGGG
AAAGAAGGTGACGACGATAACGGTACGGAAGAGAAGAGGGCAGGGAACGA
CGCGCCGCGGAGATCGAGATACCGTCAGAGCGGAGACGGCGGCGGTGGCG
GTGGTCAAGGAGAGGCTTCCGCTACGCAGCAGCAGCAGGAGGAGCAGGGG
CAGGGTGGCATGCCCTCGGATAGCGGGGAGGAGGACTCCCTAACGATGCC
GGGGTTGGGCGGCGTTATTGTGACGCAGCTCACGTGGGGAGCCGGCAGCG
GTGCTTGGGACGCCGCACTGAAGGATGCGGCGGGGGACGCGGCGGCAGAA
GGGACAGGCGCAGCAACAGCAGCAGAAGCAGCAGTAGGTGCGGCATCAAC
AGCAATAGAAACGGACAGAGCAGGGCTTGTTGGCACCACTTCTGTCGCCC
CGCCAGGAAACGCAGACGTACACGGCGATGACGACCTCGGAACGCTTGCC
ACGCCGCCGGCAGAAGAAGACTGGGACTCATCAGATGCGGAGAGGAGGGG
GGGCTTGGAGCGGGGTGCGGTGGAGACGTTAGACCAGTTAGGAGAAGATG
AGGCAGAGAGACACCGCGGTGATGGTAGCACGCGAAGGTCTACCTTTACG
GAGGTGTGTACGTGA
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